Wall clock time and date at job start Tue Mar 31 2020 11:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99629 * 2 1 4 4 H 1.48504 * 109.46855 * 274.98692 * 3 2 1 5 5 H 1.48492 * 109.47460 * 34.98343 * 3 2 1 6 6 H 1.48501 * 109.47172 * 154.99023 * 3 2 1 7 7 C 1.39931 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00393 * 147.71028 * 7 2 1 9 9 C 1.41441 * 119.99936 * 327.71301 * 7 2 1 10 10 C 1.40787 * 120.17649 * 338.23939 * 9 7 2 11 11 C 1.37711 * 120.03601 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41673 * 359.74053 * 11 10 9 13 13 C 1.39887 * 120.35509 * 0.51026 * 12 11 10 14 14 C 1.47890 * 120.02128 * 179.76572 * 13 12 11 15 15 O 1.21546 * 119.99360 * 163.11277 * 14 13 12 16 16 N 1.34770 * 120.00299 * 343.11313 * 14 13 12 17 17 C 1.47538 * 125.66876 * 353.73653 * 16 14 13 18 18 C 1.55139 * 104.96848 * 203.93225 * 17 16 14 19 19 C 1.53937 * 101.45492 * 324.20720 * 18 17 16 20 20 C 1.53478 * 111.17156 * 154.50382 * 19 18 17 21 21 C 1.54866 * 101.64981 * 136.25930 * 20 19 18 22 22 O 1.45962 * 104.64130 * 334.16225 * 21 20 19 23 23 C 1.34482 * 109.93503 * 29.79067 * 22 21 20 24 24 O 1.20829 * 125.35729 * 159.59494 * 23 22 21 25 25 C 1.47325 * 125.67198 * 173.76508 * 16 14 13 26 26 C 1.39029 * 119.94594 * 359.49549 * 13 12 11 27 27 H 0.97001 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.97997 * 359.95057 * 10 9 7 29 29 H 1.08004 * 119.79026 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.82137 * 180.28447 * 12 11 10 31 31 H 1.09000 * 110.34421 * 322.80029 * 17 16 14 32 32 H 1.09001 * 110.34058 * 84.95189 * 17 16 14 33 33 H 1.09005 * 111.02573 * 206.16651 * 18 17 16 34 34 H 1.08990 * 111.02871 * 82.24818 * 18 17 16 35 35 H 1.09007 * 110.94252 * 18.20613 * 20 19 18 36 36 H 1.09000 * 111.08549 * 254.37634 * 20 19 18 37 37 H 1.09000 * 110.42036 * 215.34174 * 21 20 19 38 38 H 1.08994 * 110.41917 * 92.99271 * 21 20 19 39 39 H 1.09003 * 109.96578 * 58.71136 * 25 16 14 40 40 H 1.09003 * 109.99963 * 297.46852 * 25 16 14 41 41 H 1.08001 * 120.19693 * 180.23077 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3842 2.1073 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5885 1.4122 0.5919 7 6 2.0080 -1.2118 0.0005 8 1 2.9628 -1.2843 -0.4991 9 6 1.4649 -2.3417 0.6554 10 6 0.4986 -2.1775 1.6660 11 6 -0.0286 -3.2797 2.3013 12 6 0.3812 -4.5537 1.9496 13 6 1.3441 -4.7362 0.9514 14 6 1.7805 -6.1009 0.5850 15 8 2.3677 -6.2904 -0.4622 16 7 1.5270 -7.1343 1.4121 17 6 0.9441 -7.0317 2.7635 18 6 1.4148 -8.3127 3.5013 19 6 1.3862 -9.3488 2.3633 20 6 2.3656 -10.4987 2.6358 21 6 1.5152 -11.7328 2.2459 22 8 0.1331 -11.3031 2.4347 23 6 0.0314 -9.9792 2.2217 24 8 -0.9900 -9.3897 1.9585 25 6 1.7865 -8.5543 1.1173 26 6 1.8863 -3.6340 0.3003 27 1 -0.4851 0.8400 -0.0004 28 1 0.1710 -1.1865 1.9434 29 1 -0.7700 -3.1491 3.0757 30 1 -0.0420 -5.4116 2.4509 31 1 1.3187 -6.1429 3.2713 32 1 -0.1440 -7.0039 2.7057 33 1 0.7193 -8.5845 4.2954 34 1 2.4244 -8.1898 3.8930 35 1 2.6428 -10.5329 3.6895 36 1 3.2500 -10.4187 2.0037 37 1 1.7444 -12.5745 2.8995 38 1 1.6910 -12.0021 1.2045 39 1 2.8453 -8.7030 0.9053 40 1 1.1879 -8.8734 0.2641 41 1 2.6273 -3.7704 -0.4735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650251221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:48 Heat of formation + Delta-G solvation = -77.680656 kcal Electronic energy + Delta-G solvation = -25949.159024 eV Core-core repulsion = 22180.349202 eV Total energy + Delta-G solvation = -3768.809822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.83241 -39.52153 -37.71343 -37.40761 -36.73920 -33.90317 -33.17396 -30.39495 -30.20310 -29.74666 -28.53886 -25.66813 -25.16115 -23.44818 -22.96398 -21.72928 -20.74347 -20.12293 -19.35596 -17.73367 -17.36137 -16.97404 -16.32440 -15.93595 -15.59418 -15.42138 -14.94448 -14.80287 -14.43471 -14.16750 -13.73152 -13.48100 -13.24957 -13.14517 -12.88252 -12.74287 -12.61837 -12.37734 -12.20386 -11.96296 -11.73832 -11.47871 -11.34104 -11.22088 -10.99491 -10.88387 -10.72806 -10.41430 -10.19208 -10.09399 -9.55316 -9.17850 -9.07284 -8.44082 -7.63814 -7.58795 -6.96916 -4.38553 1.75723 2.18248 2.74556 2.89385 3.03816 3.05586 3.16399 3.22625 3.50717 3.73058 3.82371 3.87935 3.95422 4.28835 4.40663 4.48779 4.60777 4.94920 5.01701 5.09258 5.23930 5.26492 5.37438 5.44866 5.51719 5.56848 5.64898 5.77500 5.93320 6.14867 6.31384 6.38857 6.48742 6.85985 6.91403 7.01250 7.10868 7.21877 7.35280 7.64126 7.81295 7.83946 7.92545 8.14788 8.49137 8.71769 8.77162 8.84346 10.00554 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.002874 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.212346 B = 9741.826400 C =10060.688613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.898 3.102 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.468 4.468 8 H 0.083 0.917 9 C 0.104 3.896 10 C -0.159 4.159 11 C -0.104 4.104 12 C -0.236 4.236 13 C -0.108 4.108 14 C 0.583 3.417 15 O -0.549 6.549 16 N -0.619 5.619 17 C 0.099 3.901 18 C -0.112 4.112 19 C -0.145 4.145 20 C -0.142 4.142 21 C 0.052 3.948 22 O -0.348 6.348 23 C 0.496 3.504 24 O -0.433 6.433 25 C 0.136 3.864 26 C -0.161 4.161 27 H 0.284 0.716 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -17.556 9.129 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.178 4.178 11 C -0.122 4.122 12 C -0.255 4.255 13 C -0.111 4.111 14 C 0.377 3.623 15 O -0.427 6.427 16 N -0.354 5.354 17 C -0.023 4.023 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.179 4.179 21 C -0.022 4.022 22 O -0.265 6.265 23 C 0.335 3.665 24 O -0.314 6.314 25 C 0.013 3.987 26 C -0.182 4.182 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.547 -17.297 8.391 19.549 hybrid contribution 0.263 0.756 -0.053 0.802 sum 3.810 -16.541 8.338 18.911 Atomic orbital electron populations 1.69922 1.08105 1.29976 1.31280 1.25921 0.94355 1.01546 0.91571 0.86477 0.81432 0.80725 0.79268 1.19420 1.19880 1.18077 1.19522 1.05482 0.93581 1.31000 0.89858 1.17492 0.90417 0.91422 0.90487 1.21240 1.01389 0.97265 0.97924 1.20576 0.99253 0.92966 0.99453 1.21093 1.04082 0.97020 1.03301 1.19197 1.01297 0.90235 1.00384 1.18686 0.77279 0.84264 0.82102 1.90687 1.42161 1.85146 1.24742 1.48354 1.64610 1.05199 1.17269 1.22824 0.98915 0.98032 0.82550 1.22747 1.03658 0.93052 0.95502 1.22271 0.94677 0.97908 0.99903 1.22961 0.98296 0.92009 1.04652 1.24222 0.76702 0.97962 1.03328 1.87159 1.31955 1.25619 1.81767 1.22432 0.90097 0.81411 0.72596 1.90767 1.35125 1.64933 1.40534 1.21531 1.01471 0.81427 0.94286 1.21087 1.04547 0.91105 1.01438 0.90505 0.87428 0.88886 0.87071 0.88340 0.90159 0.89319 0.88775 0.88370 0.87784 0.86976 0.89400 0.90016 0.91429 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.55 11.76 55.55 0.65 -18.90 16 2 C 0.09 2.17 4.78 -17.35 -0.08 2.08 16 3 Si 0.90 18.16 29.66 -169.99 -5.04 13.11 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.47 -12.36 8.95 -37.73 -0.34 -12.70 16 8 H 0.08 2.14 8.02 -52.48 -0.42 1.72 16 9 C 0.10 2.77 5.57 -106.87 -0.60 2.18 16 10 C -0.16 -3.99 8.79 -38.81 -0.34 -4.33 16 11 C -0.10 -2.33 10.01 -39.73 -0.40 -2.73 16 12 C -0.24 -5.05 8.15 -38.92 -0.32 -5.37 16 13 C -0.11 -2.52 5.78 -105.04 -0.61 -3.13 16 14 C 0.58 12.58 7.72 -12.31 -0.10 12.49 16 15 O -0.55 -13.28 16.80 5.33 0.09 -13.19 16 16 N -0.62 -10.36 3.34 -171.89 -0.57 -10.94 16 17 C 0.10 1.36 4.71 -2.34 -0.01 1.35 16 18 C -0.11 -1.05 5.90 -25.11 -0.15 -1.19 16 19 C -0.15 -1.41 0.75 -155.17 -0.12 -1.53 16 20 C -0.14 -0.75 6.40 -25.50 -0.16 -0.91 16 21 C 0.05 0.28 7.92 38.14 0.30 0.58 16 22 O -0.35 -3.57 11.08 -39.56 -0.44 -4.01 16 23 C 0.50 6.10 7.07 35.71 0.25 6.36 16 24 O -0.43 -7.10 17.50 -18.37 -0.32 -7.42 16 25 C 0.14 1.78 6.13 -3.54 -0.02 1.76 16 26 C -0.16 -4.15 9.33 -38.44 -0.36 -4.50 16 27 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 28 H 0.11 2.74 6.50 -52.49 -0.34 2.40 16 29 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 30 H 0.11 2.05 3.88 -52.49 -0.20 1.84 16 31 H 0.10 1.37 6.49 -51.93 -0.34 1.04 16 32 H 0.08 1.19 6.64 -51.93 -0.35 0.84 16 33 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 34 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.10 0.36 7.85 -51.92 -0.41 -0.05 16 36 H 0.10 0.43 7.37 -51.93 -0.38 0.05 16 37 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.96 7.39 -51.93 -0.38 0.58 16 40 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 41 H 0.10 2.73 7.73 -52.49 -0.41 2.32 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -32.89 337.80 -8.45 -41.34 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.87 Total: 4.50 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.04 Total: -9.60 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.08 Total: -29.83 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.67 Total: -24.62 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.04 Total: 13.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.89 -8.45 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650251221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.337 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds