Wall clock time and date at job start Tue Mar 31 2020 11:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99629 * 2 1 4 4 H 1.48504 * 109.46855 * 274.98692 * 3 2 1 5 5 H 1.48492 * 109.47460 * 34.98343 * 3 2 1 6 6 H 1.48501 * 109.47172 * 154.99023 * 3 2 1 7 7 C 1.39931 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00393 * 147.71028 * 7 2 1 9 9 C 1.41441 * 119.99936 * 327.71301 * 7 2 1 10 10 C 1.40787 * 120.17649 * 338.23939 * 9 7 2 11 11 C 1.37711 * 120.03601 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41673 * 359.74053 * 11 10 9 13 13 C 1.39887 * 120.35509 * 0.51026 * 12 11 10 14 14 C 1.47890 * 120.02128 * 179.76572 * 13 12 11 15 15 O 1.21546 * 119.99360 * 163.11277 * 14 13 12 16 16 N 1.34770 * 120.00299 * 343.11313 * 14 13 12 17 17 C 1.47538 * 125.66876 * 353.73653 * 16 14 13 18 18 C 1.55139 * 104.96848 * 203.93225 * 17 16 14 19 19 C 1.53937 * 101.45492 * 324.20720 * 18 17 16 20 20 C 1.53478 * 111.17156 * 154.50382 * 19 18 17 21 21 C 1.54866 * 101.64981 * 136.25930 * 20 19 18 22 22 O 1.45962 * 104.64130 * 334.16225 * 21 20 19 23 23 C 1.34482 * 109.93503 * 29.79067 * 22 21 20 24 24 O 1.20829 * 125.35729 * 159.59494 * 23 22 21 25 25 C 1.47325 * 125.67198 * 173.76508 * 16 14 13 26 26 C 1.39029 * 119.94594 * 359.49549 * 13 12 11 27 27 H 0.97001 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.97997 * 359.95057 * 10 9 7 29 29 H 1.08004 * 119.79026 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.82137 * 180.28447 * 12 11 10 31 31 H 1.09000 * 110.34421 * 322.80029 * 17 16 14 32 32 H 1.09001 * 110.34058 * 84.95189 * 17 16 14 33 33 H 1.09005 * 111.02573 * 206.16651 * 18 17 16 34 34 H 1.08990 * 111.02871 * 82.24818 * 18 17 16 35 35 H 1.09007 * 110.94252 * 18.20613 * 20 19 18 36 36 H 1.09000 * 111.08549 * 254.37634 * 20 19 18 37 37 H 1.09000 * 110.42036 * 215.34174 * 21 20 19 38 38 H 1.08994 * 110.41917 * 92.99271 * 21 20 19 39 39 H 1.09003 * 109.96578 * 58.71136 * 25 16 14 40 40 H 1.09003 * 109.99963 * 297.46852 * 25 16 14 41 41 H 1.08001 * 120.19693 * 180.23077 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3842 2.1073 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5885 1.4122 0.5919 7 6 2.0080 -1.2118 0.0005 8 1 2.9628 -1.2843 -0.4991 9 6 1.4649 -2.3417 0.6554 10 6 0.4986 -2.1775 1.6660 11 6 -0.0286 -3.2797 2.3013 12 6 0.3812 -4.5537 1.9496 13 6 1.3441 -4.7362 0.9514 14 6 1.7805 -6.1009 0.5850 15 8 2.3677 -6.2904 -0.4622 16 7 1.5270 -7.1343 1.4121 17 6 0.9441 -7.0317 2.7635 18 6 1.4148 -8.3127 3.5013 19 6 1.3862 -9.3488 2.3633 20 6 2.3656 -10.4987 2.6358 21 6 1.5152 -11.7328 2.2459 22 8 0.1331 -11.3031 2.4347 23 6 0.0314 -9.9792 2.2217 24 8 -0.9900 -9.3897 1.9585 25 6 1.7865 -8.5543 1.1173 26 6 1.8863 -3.6340 0.3003 27 1 -0.4851 0.8400 -0.0004 28 1 0.1710 -1.1865 1.9434 29 1 -0.7700 -3.1491 3.0757 30 1 -0.0420 -5.4116 2.4509 31 1 1.3187 -6.1429 3.2713 32 1 -0.1440 -7.0039 2.7057 33 1 0.7193 -8.5845 4.2954 34 1 2.4244 -8.1898 3.8930 35 1 2.6428 -10.5329 3.6895 36 1 3.2500 -10.4187 2.0037 37 1 1.7444 -12.5745 2.8995 38 1 1.6910 -12.0021 1.2045 39 1 2.8453 -8.7030 0.9053 40 1 1.1879 -8.8734 0.2641 41 1 2.6273 -3.7704 -0.4735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650251221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:46 Heat of formation + Delta-G solvation = -98.057567 kcal Electronic energy + Delta-G solvation = -25950.042633 eV Core-core repulsion = 22180.349202 eV Total energy + Delta-G solvation = -3769.693431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.70173 -40.98839 -38.99789 -38.64485 -38.25959 -35.71128 -34.29215 -31.97101 -31.61986 -31.22201 -29.54139 -27.29136 -26.55867 -24.59352 -23.67896 -23.20736 -22.53960 -21.02254 -20.94580 -19.34429 -18.18146 -17.98784 -17.73923 -17.20532 -17.00215 -16.79761 -16.47748 -16.39591 -15.43239 -15.14936 -15.08971 -14.87575 -14.78734 -14.31244 -14.18033 -14.03150 -13.73976 -13.66542 -13.49205 -13.12964 -12.93345 -12.86666 -12.82066 -12.55609 -12.33963 -12.29222 -11.97949 -11.83816 -11.45201 -11.31992 -11.05075 -10.96445 -10.88981 -9.87225 -9.55410 -9.44151 -8.83109 -6.37234 0.33773 0.84984 0.92078 1.36334 1.43544 1.54748 1.86129 1.98645 2.18654 2.22164 2.61959 2.77226 3.12468 3.13689 3.59211 3.62204 3.74771 3.82760 4.13001 4.19761 4.24177 4.37725 4.44739 4.51621 4.59370 4.64093 4.72619 4.74848 4.88071 4.90010 5.00457 5.01083 5.03366 5.08137 5.20322 5.29936 5.45410 5.68136 5.79336 5.91890 5.97519 6.16362 6.32170 6.37539 6.54433 6.81431 6.89286 7.08507 8.17950 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.002874 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.212346 B = 9741.826400 C =10060.688613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.051 3.949 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.176 4.176 11 C -0.102 4.102 12 C -0.220 4.220 13 C -0.115 4.115 14 C 0.576 3.424 15 O -0.587 6.587 16 N -0.612 5.612 17 C 0.085 3.915 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.129 4.129 21 C 0.045 3.955 22 O -0.361 6.361 23 C 0.496 3.504 24 O -0.488 6.488 25 C 0.128 3.872 26 C -0.194 4.194 27 H 0.295 0.705 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -19.346 11.727 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.168 4.168 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.538 4.538 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.195 4.195 11 C -0.120 4.120 12 C -0.239 4.239 13 C -0.117 4.117 14 C 0.369 3.631 15 O -0.470 6.470 16 N -0.345 5.345 17 C -0.037 4.037 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.166 4.166 21 C -0.028 4.028 22 O -0.278 6.278 23 C 0.337 3.663 24 O -0.373 6.373 25 C 0.006 3.994 26 C -0.215 4.215 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.353 -19.157 11.034 22.532 hybrid contribution -0.050 1.087 -0.830 1.369 sum 4.303 -18.070 10.205 21.194 Atomic orbital electron populations 1.69923 1.09486 1.31606 1.31535 1.26748 0.95071 1.04562 0.90414 0.85319 0.79685 0.75885 0.79627 1.18667 1.18243 1.18235 1.19728 1.05826 0.95276 1.32925 0.90854 1.17792 0.91283 0.91838 0.91324 1.21282 1.01907 0.97905 0.98435 1.20964 0.99140 0.92368 0.99518 1.21526 1.02404 0.98028 1.01923 1.19498 1.01136 0.90931 1.00179 1.18426 0.77563 0.84807 0.82325 1.90651 1.44067 1.85768 1.26467 1.48332 1.62723 1.05854 1.17604 1.23019 0.98297 1.00936 0.81412 1.22794 1.05727 0.89803 0.95158 1.22241 0.94499 0.98980 0.98070 1.23071 0.97441 0.89133 1.06974 1.24680 0.74112 0.98925 1.05093 1.87141 1.35215 1.24483 1.80969 1.22859 0.90230 0.82136 0.71120 1.90733 1.37186 1.66296 1.43092 1.21812 1.02342 0.79503 0.95732 1.21047 1.05759 0.92135 1.02521 0.89381 0.88238 0.85348 0.83596 0.88404 0.91210 0.87245 0.85795 0.85390 0.85973 0.83540 0.88449 0.88162 0.93259 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.67 11.76 21.82 0.26 -41.42 16 2 C 0.05 2.60 4.78 85.25 0.41 3.01 16 3 Si 0.98 37.85 29.66 68.60 2.03 39.89 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.51 -28.44 8.95 23.47 0.21 -28.23 16 8 H 0.07 4.05 8.02 -2.91 -0.02 4.03 16 9 C 0.08 4.48 5.57 -21.32 -0.12 4.36 16 10 C -0.18 -9.08 8.79 22.77 0.20 -8.88 16 11 C -0.10 -4.50 10.01 22.18 0.22 -4.28 16 12 C -0.22 -9.33 8.15 22.70 0.19 -9.15 16 13 C -0.11 -5.50 5.78 -20.13 -0.12 -5.62 16 14 C 0.58 25.50 7.72 86.80 0.67 26.17 16 15 O -0.59 -29.65 16.80 -3.86 -0.06 -29.71 16 16 N -0.61 -20.09 3.34 -816.01 -2.72 -22.82 16 17 C 0.08 2.16 4.71 86.91 0.41 2.57 16 18 C -0.10 -1.44 5.90 31.64 0.19 -1.25 16 19 C -0.14 -2.21 0.75 -52.61 -0.04 -2.25 16 20 C -0.13 -0.71 6.40 31.39 0.20 -0.51 16 21 C 0.04 0.28 7.92 72.62 0.58 0.86 16 22 O -0.36 -6.48 11.08 -54.24 -0.60 -7.08 16 23 C 0.50 11.37 7.07 71.05 0.50 11.87 16 24 O -0.49 -16.00 17.50 21.59 0.38 -15.63 16 25 C 0.13 3.17 6.13 86.26 0.53 3.70 16 26 C -0.19 -10.61 9.33 23.01 0.21 -10.40 16 27 H 0.30 13.58 8.30 -92.71 -0.77 12.82 16 28 H 0.10 5.22 6.50 -2.91 -0.02 5.20 16 29 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.15 5.14 3.88 -2.91 -0.01 5.13 16 31 H 0.10 2.51 6.49 -2.39 -0.02 2.50 16 32 H 0.07 1.96 6.64 -2.39 -0.02 1.94 16 33 H 0.11 1.27 8.00 -2.38 -0.02 1.25 16 34 H 0.12 1.19 8.05 -2.39 -0.02 1.17 16 35 H 0.13 0.07 7.85 -2.38 -0.02 0.05 16 36 H 0.12 0.34 7.37 -2.39 -0.02 0.33 16 37 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.10 2.13 7.39 -2.39 -0.02 2.11 16 40 H 0.05 1.41 7.84 -2.39 -0.02 1.39 16 41 H 0.08 4.80 7.73 -2.91 -0.02 4.78 16 Total: -1.00 -78.60 337.80 4.59 -74.02 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 1.07 Total: 20.79 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.24 Total: -18.04 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -2.47 Total: -64.24 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.29 Total: -52.42 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.89 kcal Total: -78.60 4.59 -74.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650251221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.041 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds