Wall clock time and date at job start Tue Mar 31 2020 12:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34516 * 125.79570 * 2 1 4 4 C 1.41380 * 106.84464 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.83963 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78963 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46852 * 89.99920 * 6 5 4 8 8 O 1.21273 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99327 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 O 1.34307 * 108.42433 * 0.26099 * 5 4 3 27 27 H 1.09002 * 109.46777 * 89.99803 * 1 2 3 28 28 H 1.08991 * 109.47234 * 210.00347 * 1 2 3 29 29 H 1.08996 * 109.46665 * 330.00416 * 1 2 3 30 30 H 1.08003 * 126.57213 * 0.05391 * 3 2 1 31 31 H 1.07996 * 126.58281 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.46713 * 329.99720 * 6 5 4 33 33 H 1.08997 * 109.46911 * 209.99638 * 6 5 4 34 34 H 0.96993 * 120.00552 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 36 36 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 38 38 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 40 40 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6381 -0.0019 7 6 5.1666 -1.9476 1.4189 8 8 4.5448 -1.4637 2.3409 9 7 6.2124 -2.7613 1.6648 10 6 6.5979 -3.0618 3.0460 11 6 7.7877 -3.9866 3.0456 12 6 7.5977 -5.3568 3.0443 13 6 8.6869 -6.2087 3.0435 14 6 9.9684 -5.6935 3.0373 15 6 10.1624 -4.3186 3.0443 16 8 11.4208 -3.8092 3.0444 17 6 12.4368 -4.6880 3.1594 18 1 12.2352 -5.7490 3.1642 19 6 13.7406 -4.2295 3.2715 20 7 13.9861 -2.9371 3.2661 21 14 15.1483 -5.4470 3.4315 22 1 15.1793 -6.3277 2.2364 23 1 16.4322 -4.7082 3.5360 24 1 14.9524 -6.2728 4.6501 25 6 9.0663 -3.4654 3.0460 26 8 2.2924 -1.0895 -0.0073 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.9666 2.1204 0.0008 31 1 4.5213 1.2431 -0.0004 32 1 5.6040 -1.1586 -0.5152 33 1 4.5106 -2.5632 -0.5163 34 1 6.7104 -3.1474 0.9274 35 1 5.7645 -3.5413 3.5595 36 1 6.8575 -2.1364 3.5602 37 1 6.5966 -5.7620 3.0440 38 1 8.5353 -7.2779 3.0429 39 1 10.8187 -6.3593 3.0314 40 1 14.8982 -2.6164 3.3449 41 1 9.2139 -2.3956 3.0474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771632637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:27 Heat of formation + Delta-G solvation = -30.146922 kcal Electronic energy + Delta-G solvation = -24161.686908 eV Core-core repulsion = 20394.938303 eV Total energy + Delta-G solvation = -3766.748605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.70861 -39.75228 -39.01279 -36.84803 -34.55022 -33.31175 -33.18548 -32.36415 -31.09879 -29.96492 -29.10913 -26.28349 -25.36737 -24.57369 -21.94112 -21.75293 -20.96050 -20.77362 -20.11433 -18.04168 -17.36334 -17.00272 -16.74910 -16.00710 -15.65216 -15.57698 -15.13326 -14.67469 -14.44631 -14.35697 -13.81408 -13.71285 -13.58358 -13.43590 -13.16264 -12.96584 -12.92506 -12.72227 -12.43676 -12.40179 -12.08864 -11.77873 -11.68221 -11.40665 -10.95713 -10.86104 -10.74201 -10.51820 -10.05243 -9.93219 -9.44607 -9.04457 -8.91403 -8.42185 -8.26041 -7.36345 -6.51577 -4.11289 1.52843 1.87740 2.23367 2.48189 2.57166 2.71839 3.08509 3.09815 3.12918 3.42217 3.90408 4.33600 4.46304 4.67980 4.79098 4.88185 4.91057 4.93925 5.04300 5.08803 5.16337 5.22804 5.24815 5.42726 5.50861 5.69465 5.70963 5.81274 5.84523 5.88662 6.01756 6.04532 6.21809 6.41373 6.42216 6.52083 6.78191 6.96101 7.04548 7.15007 7.23843 7.32295 7.49397 7.67921 7.92267 8.18130 8.93575 9.61736 10.65990 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.002072 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.753111 B =13507.805787 C =14137.563166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 C -0.211 4.211 4 C -0.193 4.193 5 C 0.006 3.994 6 C -0.062 4.062 7 C 0.511 3.489 8 O -0.534 6.534 9 N -0.719 5.719 10 C 0.168 3.832 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.175 6.175 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.171 4.171 26 O -0.171 6.171 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.809 1.992 -8.015 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.230 4.230 4 C -0.212 4.212 5 C -0.044 4.044 6 C -0.101 4.101 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.371 5.371 10 C 0.046 3.954 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.191 4.191 26 O -0.068 6.068 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.050 2.446 -7.329 21.487 hybrid contribution 1.204 -0.702 -0.198 1.407 sum -18.847 1.744 -7.527 20.369 Atomic orbital electron populations 1.20282 0.85227 1.04054 1.03287 1.22388 0.93916 0.84168 1.06083 1.21523 0.92682 0.99300 1.09480 1.21511 0.98299 0.93704 1.07690 1.21419 0.82562 0.93852 1.06584 1.20108 0.93739 1.00232 0.96053 1.20366 0.80294 0.78844 0.90833 1.90739 1.52954 1.51297 1.46055 1.46090 1.32274 1.49218 1.09531 1.20163 0.94750 0.98125 0.82400 1.19253 0.92635 0.93561 1.01939 1.20483 0.97886 0.92458 1.10668 1.20748 0.92277 0.98515 0.97869 1.21242 0.97544 0.95294 1.10419 1.19326 0.86591 0.91605 0.92873 1.83981 1.09958 1.35699 1.78238 1.21276 0.84068 0.89111 1.52573 0.89075 1.25298 0.97749 0.97000 0.96405 1.70021 1.21416 1.12626 1.45435 0.85776 0.79234 0.79179 0.79223 1.19475 1.20230 1.19465 1.20086 0.89940 0.99054 1.10001 1.83915 1.16224 1.35128 1.71559 0.90249 0.90596 0.89409 0.83588 0.83515 0.85679 0.87026 0.76081 0.90921 0.90788 0.87503 0.87267 0.85456 0.91868 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.11 16 2 C -0.02 -0.17 7.32 -35.62 -0.26 -0.43 16 3 C -0.21 -2.31 10.81 -39.70 -0.43 -2.74 16 4 C -0.19 -2.28 10.81 -39.70 -0.43 -2.71 16 5 C 0.01 0.08 5.81 -35.62 -0.21 -0.13 16 6 C -0.06 -0.59 6.23 -29.03 -0.18 -0.77 16 7 C 0.51 6.72 7.82 -10.98 -0.09 6.63 16 8 O -0.53 -9.33 16.03 5.56 0.09 -9.25 16 9 N -0.72 -8.86 5.55 -61.47 -0.34 -9.21 16 10 C 0.17 2.42 5.80 -5.19 -0.03 2.39 16 11 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 12 C -0.20 -3.12 9.70 -39.53 -0.38 -3.50 16 13 C -0.08 -1.30 10.04 -39.61 -0.40 -1.69 16 14 C -0.23 -4.62 9.17 -39.40 -0.36 -4.98 16 15 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 16 O -0.18 -4.83 9.76 0.05 0.00 -4.83 16 17 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 18 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 21 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 26 O -0.17 -2.23 10.65 5.67 0.06 -2.17 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.19 8.46 -40.82 -0.35 3.85 16 35 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -33.75 361.77 -7.50 -41.25 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.12 Total: 7.50 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -3.38 Total: -19.78 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.42 Total: -33.13 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.15 Total: -16.25 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.75 -7.50 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771632637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.103 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds