Wall clock time and date at job start Tue Mar 31 2020 12:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34516 * 125.79570 * 2 1 4 4 C 1.41380 * 106.84464 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.83963 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78963 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46852 * 89.99920 * 6 5 4 8 8 O 1.21273 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99327 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 O 1.34307 * 108.42433 * 0.26099 * 5 4 3 27 27 H 1.09002 * 109.46777 * 89.99803 * 1 2 3 28 28 H 1.08991 * 109.47234 * 210.00347 * 1 2 3 29 29 H 1.08996 * 109.46665 * 330.00416 * 1 2 3 30 30 H 1.08003 * 126.57213 * 0.05391 * 3 2 1 31 31 H 1.07996 * 126.58281 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.46713 * 329.99720 * 6 5 4 33 33 H 1.08997 * 109.46911 * 209.99638 * 6 5 4 34 34 H 0.96993 * 120.00552 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 36 36 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 38 38 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 40 40 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6381 -0.0019 7 6 5.1666 -1.9476 1.4189 8 8 4.5448 -1.4637 2.3409 9 7 6.2124 -2.7613 1.6648 10 6 6.5979 -3.0618 3.0460 11 6 7.7877 -3.9866 3.0456 12 6 7.5977 -5.3568 3.0443 13 6 8.6869 -6.2087 3.0435 14 6 9.9684 -5.6935 3.0373 15 6 10.1624 -4.3186 3.0443 16 8 11.4208 -3.8092 3.0444 17 6 12.4368 -4.6880 3.1594 18 1 12.2352 -5.7490 3.1642 19 6 13.7406 -4.2295 3.2715 20 7 13.9861 -2.9371 3.2661 21 14 15.1483 -5.4470 3.4315 22 1 15.1793 -6.3277 2.2364 23 1 16.4322 -4.7082 3.5360 24 1 14.9524 -6.2728 4.6501 25 6 9.0663 -3.4654 3.0460 26 8 2.2924 -1.0895 -0.0073 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.9666 2.1204 0.0008 31 1 4.5213 1.2431 -0.0004 32 1 5.6040 -1.1586 -0.5152 33 1 4.5106 -2.5632 -0.5163 34 1 6.7104 -3.1474 0.9274 35 1 5.7645 -3.5413 3.5595 36 1 6.8575 -2.1364 3.5602 37 1 6.5966 -5.7620 3.0440 38 1 8.5353 -7.2779 3.0429 39 1 10.8187 -6.3593 3.0314 40 1 14.8982 -2.6164 3.3449 41 1 9.2139 -2.3956 3.0474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771632637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:26 Heat of formation + Delta-G solvation = -51.998081 kcal Electronic energy + Delta-G solvation = -24162.634445 eV Core-core repulsion = 20394.938303 eV Total energy + Delta-G solvation = -3767.696142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.54273 -41.04399 -40.47769 -38.46964 -35.80185 -34.29236 -34.16653 -33.95791 -32.34684 -31.00492 -30.51926 -27.65571 -26.99607 -25.57247 -23.27141 -22.80844 -22.46091 -21.82046 -21.00751 -19.65240 -18.94383 -18.18217 -17.76497 -16.92948 -16.86620 -16.75501 -16.49507 -16.17207 -16.08036 -15.51652 -15.20282 -15.05625 -14.71055 -14.37527 -14.23639 -13.94477 -13.77084 -13.75443 -13.71391 -13.57794 -13.35375 -13.00982 -12.94464 -12.54634 -12.49805 -12.38694 -12.27448 -12.14498 -11.23853 -11.15609 -10.81317 -10.79155 -10.16653 -9.76894 -9.21133 -9.03283 -8.46715 -6.15286 0.36420 0.69388 0.72957 1.36026 1.46112 1.51956 1.56277 1.63179 1.93431 2.17709 2.36620 2.86298 3.15800 3.40141 3.56122 3.79086 3.93704 4.01395 4.09189 4.12803 4.26131 4.31110 4.40992 4.44774 4.52695 4.59741 4.67093 4.72045 4.73246 4.86643 4.92624 5.01336 5.07396 5.11725 5.25503 5.29056 5.33171 5.62117 5.64295 5.70419 5.71650 6.01570 6.16259 6.21269 6.49853 6.97986 7.17219 7.78053 8.75998 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.002072 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.753111 B =13507.805787 C =14137.563166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 C -0.228 4.228 4 C -0.210 4.210 5 C -0.016 4.016 6 C -0.054 4.054 7 C 0.513 3.487 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.174 3.826 11 C -0.058 4.058 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.112 3.888 16 O -0.231 6.231 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.181 4.181 26 O -0.191 6.191 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.416 0.584 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.272 0.728 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 -0.115 -8.845 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.247 4.247 4 C -0.229 4.229 5 C -0.066 4.066 6 C -0.093 4.093 7 C 0.301 3.699 8 O -0.461 6.461 9 N -0.362 5.362 10 C 0.050 3.950 11 C -0.058 4.058 12 C -0.187 4.187 13 C -0.087 4.087 14 C -0.253 4.253 15 C 0.061 3.939 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.201 4.201 26 O -0.089 6.089 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.253 0.747 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.434 0.303 -8.189 23.883 hybrid contribution 1.527 -0.060 0.053 1.529 sum -20.907 0.243 -8.136 22.435 Atomic orbital electron populations 1.20475 0.82518 1.05006 1.04773 1.23208 0.95608 0.83755 1.05000 1.21880 0.92522 1.00473 1.09798 1.21853 0.99217 0.94153 1.07670 1.21880 0.83009 0.94557 1.07162 1.20214 0.93792 1.01493 0.93797 1.20937 0.79445 0.77721 0.91846 1.90723 1.54519 1.53028 1.47812 1.45950 1.32198 1.49074 1.09015 1.20020 0.93980 0.97236 0.83720 1.19414 0.91765 0.94544 1.00117 1.20996 0.99510 0.91730 1.06512 1.21161 0.90738 1.00780 0.96040 1.21376 0.99211 0.94122 1.10638 1.19866 0.85970 0.93409 0.94618 1.83947 1.11553 1.36932 1.81389 1.21781 0.84704 0.89837 1.52586 0.87897 1.26579 1.00508 0.99070 0.95929 1.70175 1.21982 1.15067 1.48610 0.84660 0.75146 0.76619 0.79899 1.17984 1.19876 1.18264 1.20220 0.90742 0.98557 1.10539 1.83906 1.16792 1.36195 1.71966 0.88397 0.90375 0.87679 0.81672 0.82646 0.82849 0.84248 0.74666 0.89752 0.92007 0.83461 0.83356 0.86152 0.91887 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 71.24 0.74 -0.08 16 2 C -0.03 -0.54 7.32 24.83 0.18 -0.36 16 3 C -0.23 -4.79 10.81 22.19 0.24 -4.55 16 4 C -0.21 -4.83 10.81 22.19 0.24 -4.59 16 5 C -0.02 -0.38 5.81 24.83 0.14 -0.23 16 6 C -0.05 -0.92 6.23 29.11 0.18 -0.74 16 7 C 0.51 12.59 7.82 87.66 0.69 13.28 16 8 O -0.58 -19.90 16.03 -3.01 -0.05 -19.95 16 9 N -0.71 -15.85 5.55 -466.77 -2.59 -18.44 16 10 C 0.17 4.64 5.80 85.63 0.50 5.13 16 11 C -0.06 -1.77 5.25 -19.88 -0.10 -1.88 16 12 C -0.17 -4.64 9.70 22.30 0.22 -4.42 16 13 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 14 C -0.23 -9.44 9.17 22.39 0.21 -9.24 16 15 C 0.11 5.27 6.65 22.58 0.15 5.42 16 16 O -0.23 -13.51 9.76 -22.74 -0.22 -13.73 16 17 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 18 H 0.10 5.28 5.21 -2.91 -0.02 5.26 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 21 Si 1.02 41.86 29.55 68.60 2.03 43.88 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 C -0.18 -7.23 9.65 22.39 0.22 -7.02 16 26 O -0.19 -4.79 10.65 -2.61 -0.03 -4.82 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 7.42 8.46 -92.71 -0.78 6.64 16 35 H 0.08 2.12 8.09 -2.38 -0.02 2.11 16 36 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 41 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -79.14 361.77 4.64 -74.50 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.28 Total: 28.70 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.93 Total: -34.71 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.29 Total: -73.87 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.30 Total: -38.50 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -79.14 4.64 -74.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771632637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.498 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds