Wall clock time and date at job start Tue Mar 31 2020 10:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40364 * 126.64308 * 2 1 4 4 C 1.35135 * 107.11565 * 179.97438 * 3 2 1 5 5 O 1.33941 * 108.77187 * 359.73417 * 4 3 2 6 6 C 1.34920 * 109.38215 * 0.44001 * 5 4 3 7 7 C 1.46612 * 125.98855 * 179.82604 * 6 5 4 8 8 O 1.21709 * 119.99747 * 179.68880 * 7 6 5 9 9 N 1.34772 * 120.00243 * 359.69183 * 7 6 5 10 10 C 1.39831 * 120.00128 * 184.61431 * 9 7 6 11 11 C 1.38956 * 120.04494 * 144.91499 * 10 9 7 12 12 C 1.38117 * 120.03220 * 179.97438 * 11 10 9 13 13 C 1.38214 * 120.13207 * 359.78968 * 12 11 10 14 14 C 1.38766 * 120.08810 * 0.46584 * 13 12 11 15 15 O 1.35899 * 120.02337 * 179.78752 * 14 13 12 16 16 C 1.42900 * 116.99716 * 359.72593 * 15 14 13 17 17 C 1.52995 * 109.47308 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47204 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99954 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00217 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99640 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00282 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 60.00368 * 22 20 18 24 24 H 1.48499 * 109.47309 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46961 * 300.00361 * 22 20 18 26 26 C 1.38628 * 119.96349 * 359.51112 * 14 13 12 27 27 H 1.09001 * 109.47044 * 270.01899 * 1 2 3 28 28 H 1.08994 * 109.47261 * 30.02861 * 1 2 3 29 29 H 1.09000 * 109.47097 * 150.02777 * 1 2 3 30 30 H 1.07994 * 126.44423 * 0.02562 * 3 2 1 31 31 H 1.07996 * 125.61524 * 180.02562 * 4 3 2 32 32 H 0.96997 * 119.99920 * 4.60668 * 9 7 6 33 33 H 1.07998 * 119.97730 * 359.97438 * 11 10 9 34 34 H 1.08005 * 119.93153 * 180.02562 * 12 11 10 35 35 H 1.07994 * 119.95586 * 180.25070 * 13 12 11 36 36 H 1.09008 * 109.46683 * 299.99738 * 16 15 14 37 37 H 1.09001 * 109.47559 * 59.99348 * 16 15 14 38 38 H 1.08998 * 109.47229 * 299.99647 * 17 16 15 39 39 H 1.09005 * 109.46902 * 59.99787 * 17 16 15 40 40 H 0.97000 * 119.99942 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.06360 * 180.23603 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6007 -0.6647 0.0068 6 6 2.3222 -1.0957 0.0006 7 6 1.8847 -2.4950 0.0008 8 8 0.6971 -2.7613 0.0004 9 7 2.7976 -3.4865 0.0014 10 6 2.3832 -4.8185 -0.0959 11 6 3.1565 -5.7385 -0.7934 12 6 2.7473 -7.0542 -0.8888 13 6 1.5708 -7.4602 -0.2877 14 6 0.7918 -6.5447 0.4056 15 8 -0.3670 -6.9444 0.9924 16 6 -0.7250 -8.3205 0.8504 17 6 -2.0487 -8.5803 1.5723 18 6 -2.4265 -10.0313 1.4220 19 1 -1.7868 -10.7012 0.8666 20 6 -3.5890 -10.5038 1.9934 21 7 -4.3683 -9.6880 2.6692 22 14 -4.0578 -12.3024 1.8064 23 1 -2.9952 -13.1548 2.3977 24 1 -5.3425 -12.5545 2.5072 25 1 -4.2085 -12.6274 0.3652 26 6 1.1992 -5.2233 0.5042 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 2.0305 2.1595 0.0004 31 1 4.5045 1.2918 0.0011 32 1 3.7420 -3.2761 0.0691 33 1 4.0780 -5.4245 -1.2610 34 1 3.3498 -7.7680 -1.4310 35 1 1.2555 -8.4905 -0.3607 36 1 -0.8345 -8.5601 -0.2074 37 1 0.0547 -8.9457 1.2856 38 1 -1.9388 -8.3408 2.6300 39 1 -2.8285 -7.9551 1.1373 40 1 -5.1859 -10.0204 3.0715 41 1 0.5961 -4.5103 1.0467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055569607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:54 Heat of formation + Delta-G solvation = -37.361163 kcal Electronic energy + Delta-G solvation = -24566.705181 eV Core-core repulsion = 20799.643744 eV Total energy + Delta-G solvation = -3767.061438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.09185 -40.55748 -39.19421 -37.20384 -34.97319 -34.17951 -33.32618 -31.15643 -30.78077 -29.59985 -29.06411 -27.70798 -25.06409 -23.96816 -22.68263 -22.12483 -21.54576 -20.47849 -20.11404 -18.67526 -18.04796 -16.79578 -16.47432 -16.39894 -16.03525 -15.53023 -15.43366 -15.25620 -14.93152 -14.58501 -14.24683 -13.91954 -13.45788 -13.35872 -13.31032 -13.00431 -12.85324 -12.71503 -12.29683 -12.10564 -11.79727 -11.67239 -11.43168 -10.89919 -10.86959 -10.57536 -10.39994 -10.10177 -10.01941 -9.80534 -9.62553 -9.28032 -9.03312 -8.42495 -8.27657 -7.82158 -6.07100 -4.11872 0.62031 1.43150 1.63980 1.97780 2.29502 2.82182 2.87238 3.30755 3.34993 3.36809 3.84711 3.96917 4.28252 4.40297 4.43558 4.56639 4.99936 5.11250 5.16301 5.19292 5.28992 5.36184 5.38091 5.44360 5.50531 5.66899 5.69948 5.78535 5.88098 6.04793 6.07137 6.09641 6.25001 6.34603 6.48543 6.54503 6.61152 6.76218 6.95468 7.16107 7.54188 7.68267 7.77959 7.84099 8.09783 8.26990 8.93544 9.52079 11.04446 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002334 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.245102 B =11993.822612 C =13112.795577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.078 4.078 3 C -0.225 4.225 4 C -0.002 4.002 5 O -0.165 6.165 6 C -0.089 4.089 7 C 0.601 3.399 8 O -0.487 6.487 9 N -0.662 5.662 10 C 0.173 3.827 11 C -0.192 4.192 12 C -0.062 4.062 13 C -0.223 4.223 14 C 0.164 3.836 15 O -0.312 6.312 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.162 4.162 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.211 0.789 32 H 0.414 0.586 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.732 20.516 -7.048 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 C -0.244 4.244 4 C -0.071 4.071 5 O -0.061 6.061 6 C -0.141 4.141 7 C 0.389 3.611 8 O -0.362 6.362 9 N -0.306 5.306 10 C 0.079 3.921 11 C -0.213 4.213 12 C -0.080 4.080 13 C -0.242 4.242 14 C 0.116 3.884 15 O -0.224 6.224 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.183 4.183 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.175 0.825 31 H 0.228 0.772 32 H 0.251 0.749 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.780 20.269 -6.831 28.463 hybrid contribution 0.337 -0.739 -0.148 0.826 sum 19.116 19.530 -6.979 28.206 Atomic orbital electron populations 1.20496 0.87887 1.03933 1.03325 1.20721 0.97887 0.90873 0.98594 1.21786 0.92409 1.00276 1.09936 1.24384 1.00031 0.80496 1.02220 1.84047 1.28243 1.22822 1.71010 1.21685 0.81650 0.94348 1.16409 1.16581 0.85770 0.81826 0.76928 1.90938 1.15468 1.81717 1.48097 1.43233 1.10616 1.04240 1.72537 1.17256 0.95255 0.82488 0.97063 1.20634 1.02274 0.93785 1.04561 1.20662 0.95265 0.94919 0.97198 1.21413 0.97690 1.00554 1.04578 1.18965 0.86183 0.92516 0.90785 1.86197 1.35142 1.31198 1.69886 1.23358 1.00148 0.76775 1.00649 1.19125 0.88882 0.96995 0.96223 1.20931 1.07097 0.93770 1.34683 0.92405 1.24997 0.96181 0.98084 0.94965 1.69971 1.13289 1.35109 1.34357 0.86543 0.77791 0.84639 0.78358 1.20107 1.21137 1.20099 1.20423 0.98421 0.94542 1.04882 0.90376 0.91277 0.89197 0.82502 0.77211 0.74943 0.86009 0.85590 0.84962 0.93022 0.93036 0.95373 0.95333 0.92656 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.82 36.00 0.35 -0.63 16 2 C -0.08 -0.79 6.20 -104.43 -0.65 -1.44 16 3 C -0.22 -1.63 10.83 -39.89 -0.43 -2.07 16 4 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 5 O -0.17 -1.44 10.41 4.95 0.05 -1.39 16 6 C -0.09 -0.98 7.13 -36.81 -0.26 -1.25 16 7 C 0.60 7.90 7.63 -12.88 -0.10 7.80 16 8 O -0.49 -7.97 12.16 5.18 0.06 -7.91 16 9 N -0.66 -7.62 5.33 -11.08 -0.06 -7.68 16 10 C 0.17 2.42 6.30 -83.74 -0.53 1.89 16 11 C -0.19 -2.33 9.96 -39.36 -0.39 -2.72 16 12 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 13 C -0.22 -3.53 9.04 -39.40 -0.36 -3.89 16 14 C 0.16 3.03 6.68 -39.24 -0.26 2.77 16 15 O -0.31 -6.77 10.13 -19.42 -0.20 -6.97 16 16 C 0.06 1.42 4.68 37.16 0.17 1.60 16 17 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 18 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C -0.16 -2.80 8.63 -39.24 -0.34 -3.13 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.07 6.44 -51.93 -0.33 0.74 16 30 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.21 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.41 3.42 8.58 -40.82 -0.35 3.07 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16 36 H 0.05 1.08 7.67 -51.92 -0.40 0.68 16 37 H 0.05 1.06 7.65 -51.93 -0.40 0.67 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.15 2.70 6.22 -52.49 -0.33 2.37 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -33.66 354.78 -7.53 -41.19 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.06 Total: 2.01 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.39 Total: -14.96 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.68 Total: -33.79 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.08 Total: -16.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.66 -7.53 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.828 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds