Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 117.00177 * 2 1 4 4 C 1.38847 * 119.98400 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.24001 * 180.02562 * 4 3 2 6 6 C 1.38008 * 120.20443 * 359.95421 * 5 4 3 7 7 C 1.39559 * 119.96450 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.11621 * 180.27264 * 7 6 5 9 9 O 1.21548 * 120.00028 * 127.90670 * 8 7 6 10 10 N 1.34781 * 120.00177 * 307.90958 * 8 7 6 11 11 C 1.46498 * 119.99981 * 185.04626 * 10 8 7 12 12 C 1.50702 * 109.47215 * 90.00123 * 11 10 8 13 13 H 1.08001 * 119.99974 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99950 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99865 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47134 * 90.00114 * 16 14 12 18 18 H 1.48498 * 109.46988 * 210.00147 * 16 14 12 19 19 H 1.48497 * 109.47141 * 329.99884 * 16 14 12 20 20 C 1.46495 * 119.99714 * 5.04374 * 10 8 7 21 21 C 1.50701 * 109.47171 * 105.90279 * 20 10 8 22 22 C 1.34511 * 125.79463 * 84.16259 * 21 20 10 23 23 C 1.41377 * 106.84464 * 179.89441 * 22 21 20 24 24 C 1.34513 * 106.83936 * 0.37554 * 23 22 21 25 25 O 1.34298 * 108.42254 * 359.77061 * 24 23 22 26 26 C 1.38451 * 119.98055 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47364 * 300.00171 * 1 2 3 29 29 H 1.08997 * 109.47030 * 59.99724 * 1 2 3 30 30 H 1.08006 * 119.88213 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.89565 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.01339 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47314 * 209.99801 * 11 10 8 34 34 H 1.09004 * 109.47438 * 330.00096 * 11 10 8 35 35 H 0.96999 * 119.99916 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47285 * 225.89556 * 20 10 8 37 37 H 1.08998 * 109.47525 * 345.90135 * 20 10 8 38 38 H 1.08007 * 126.57636 * 0.03283 * 22 21 20 39 39 H 1.08004 * 126.58042 * 180.16715 * 23 22 21 40 40 H 1.08003 * 125.78857 * 179.75490 * 24 23 22 41 41 H 1.07993 * 120.11058 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9117 3.6098 0.0000 6 6 3.2893 3.6931 -0.0001 7 6 4.0580 2.5283 -0.0002 8 6 5.5341 2.6136 0.0057 9 8 6.1749 2.0008 0.8371 10 7 6.1691 3.3709 -0.9107 11 6 7.6326 3.3689 -0.9755 12 6 8.0922 2.2880 -1.9197 13 1 7.3667 1.6645 -2.4210 14 6 9.4390 2.0942 -2.1427 15 7 9.8400 1.1506 -2.9664 16 14 10.6939 3.1721 -1.2751 17 1 11.0718 2.5485 0.0186 18 1 11.9009 3.3116 -2.1287 19 1 10.1065 4.5129 -1.0254 20 6 5.3957 4.1959 -1.8420 21 6 5.5016 5.6437 -1.4375 22 6 6.4989 6.4827 -1.7704 23 6 6.1951 7.7330 -1.1846 24 6 5.0345 7.5812 -0.5217 25 8 4.6191 6.3137 -0.6784 26 6 3.4287 1.2830 0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2111 2.3163 0.0014 31 1 1.3178 4.5119 0.0000 32 1 3.7721 4.6591 -0.0001 33 1 7.9818 4.3372 -1.3342 34 1 8.0401 3.1810 0.0179 35 1 10.7875 1.0140 -3.1230 36 1 5.7890 4.0710 -2.8509 37 1 4.3505 3.8877 -1.8187 38 1 7.3644 6.2470 -2.3719 39 1 6.7838 8.6359 -1.2530 40 1 4.5236 8.3483 0.0412 41 1 4.0183 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -11.024336 kcal Electronic energy + Delta-G solvation = -26208.725652 eV Core-core repulsion = 22442.806265 eV Total energy + Delta-G solvation = -3765.919387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44406 -40.34546 -39.11915 -36.98487 -35.42170 -32.84144 -32.69856 -31.22299 -30.55010 -30.13925 -28.01052 -27.41656 -25.57837 -23.83102 -22.44243 -21.91338 -21.41370 -20.52273 -19.35257 -17.95187 -17.31174 -16.81383 -16.40464 -16.20300 -16.15067 -15.83545 -15.45459 -15.40989 -14.71333 -14.18370 -13.90296 -13.85372 -13.44902 -13.05720 -12.92567 -12.77093 -12.61649 -12.49273 -12.38677 -12.21731 -11.75875 -11.62695 -11.47871 -11.11817 -11.02238 -10.90153 -10.55042 -10.22178 -9.77227 -9.60134 -9.29884 -8.90772 -8.60297 -8.37460 -8.21759 -7.93012 -6.10445 -4.09977 1.06804 1.42242 1.82009 2.75465 2.96044 3.06391 3.28837 3.34922 3.35754 3.37772 3.69650 3.94389 4.38487 4.70449 4.73919 4.86560 4.95533 4.97035 5.02354 5.10913 5.18306 5.23059 5.28043 5.34814 5.42736 5.44376 5.55029 5.87870 5.94105 5.95943 6.12671 6.15606 6.24480 6.40183 6.49586 6.57427 6.65526 6.71947 6.91543 7.16181 7.29710 7.32722 7.56977 8.04677 8.42716 8.76773 8.93142 9.49198 11.02574 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.005027 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.334144 B = 5568.049525 C = 7593.976848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.121 3.879 4 C -0.197 4.197 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.078 4.078 8 C 0.556 3.444 9 O -0.523 6.523 10 N -0.580 5.580 11 C 0.214 3.786 12 C -0.532 4.532 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.180 3.820 21 C -0.026 4.026 22 C -0.190 4.190 23 C -0.212 4.212 24 C -0.049 4.049 25 O -0.177 6.177 26 C -0.101 4.101 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.199 0.801 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 9.619 3.423 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.076 3.924 4 C -0.216 4.216 5 C -0.103 4.103 6 C -0.153 4.153 7 C -0.081 4.081 8 C 0.343 3.657 9 O -0.399 6.399 10 N -0.310 5.310 11 C 0.094 3.906 12 C -0.570 4.570 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.533 5.533 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.189 1.189 20 C 0.056 3.944 21 C -0.077 4.077 22 C -0.210 4.210 23 C -0.232 4.232 24 C -0.116 4.116 25 O -0.074 6.074 26 C -0.121 4.121 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.215 0.785 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.524 8.859 3.901 20.901 hybrid contribution 0.737 0.909 0.293 1.206 sum -17.788 9.768 4.195 20.722 Atomic orbital electron populations 1.23042 0.78578 1.03880 1.01210 1.86109 1.21181 1.26731 1.88855 1.18817 0.91922 0.84286 0.97409 1.21317 0.99915 0.92356 1.07983 1.20820 0.94180 0.96956 0.98357 1.21578 0.93982 0.98310 1.01460 1.19911 0.94022 0.93417 1.00767 1.18181 0.86319 0.79663 0.81524 1.90778 1.67201 1.44624 1.37309 1.47861 1.08736 1.41978 1.32437 1.19765 0.74288 0.97925 0.98599 1.21301 0.93173 1.16854 1.25717 0.90474 1.24813 0.98136 0.95041 0.94711 1.69892 1.15763 1.31772 1.35853 0.86906 0.81429 0.81584 0.80192 1.19834 1.21000 1.18924 1.20124 0.98661 0.80977 0.94670 1.23110 0.91091 0.95787 0.97716 1.21759 1.00806 0.93024 1.05452 1.21838 0.98593 0.99438 1.03292 1.23963 0.98020 0.84970 1.04691 1.83932 1.45469 1.21727 1.56274 1.20412 0.91324 0.98005 1.02328 0.88295 0.92754 0.92665 0.85394 0.85380 0.84197 0.94644 0.94238 0.92493 0.86849 0.88279 0.83056 0.83698 0.78455 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.08 10.49 -19.48 -0.20 -4.29 16 3 C 0.12 1.69 6.68 -39.28 -0.26 1.42 16 4 C -0.20 -2.26 9.03 -39.35 -0.36 -2.61 16 5 C -0.09 -0.99 10.03 -39.66 -0.40 -1.39 16 6 C -0.13 -1.94 7.43 -39.17 -0.29 -2.24 16 7 C -0.08 -1.36 4.89 -104.99 -0.51 -1.87 16 8 C 0.56 12.06 7.20 -12.32 -0.09 11.97 16 9 O -0.52 -13.41 16.61 5.32 0.09 -13.32 16 10 N -0.58 -12.20 2.49 -177.55 -0.44 -12.64 16 11 C 0.21 5.23 4.20 -5.19 -0.02 5.20 16 12 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 13 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 16 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 20 C 0.18 2.99 5.49 -5.20 -0.03 2.96 16 21 C -0.03 -0.41 6.39 -35.63 -0.23 -0.63 16 22 C -0.19 -2.92 9.88 -39.71 -0.39 -3.31 16 23 C -0.21 -2.72 10.91 -39.70 -0.43 -3.15 16 24 C -0.05 -0.57 12.09 29.42 0.36 -0.21 16 25 O -0.18 -2.47 8.16 5.70 0.05 -2.42 16 26 C -0.10 -1.70 9.69 -39.02 -0.38 -2.07 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.13 1.07 6.28 -52.48 -0.33 0.74 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.14 2.01 4.13 -52.49 -0.22 1.80 16 33 H 0.04 0.82 5.75 -51.93 -0.30 0.52 16 34 H 0.04 1.04 6.78 -51.93 -0.35 0.69 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.10 1.47 4.88 -51.93 -0.25 1.21 16 38 H 0.15 2.35 7.76 -52.48 -0.41 1.94 16 39 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -34.87 344.84 -6.47 -41.34 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.78 Total: 3.89 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.48 Total: -8.01 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.33 Total: -39.15 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.07 Total: -20.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.87 -6.47 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds