Wall clock time and date at job start Tue Mar 31 2020 10:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 117.00177 * 2 1 4 4 C 1.38847 * 119.98400 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.24001 * 180.02562 * 4 3 2 6 6 C 1.38008 * 120.20443 * 359.95421 * 5 4 3 7 7 C 1.39559 * 119.96450 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.11621 * 180.27264 * 7 6 5 9 9 O 1.21548 * 120.00028 * 127.90670 * 8 7 6 10 10 N 1.34781 * 120.00177 * 307.90958 * 8 7 6 11 11 C 1.46498 * 119.99981 * 185.04626 * 10 8 7 12 12 C 1.50702 * 109.47215 * 90.00123 * 11 10 8 13 13 H 1.08001 * 119.99974 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99950 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99865 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47134 * 90.00114 * 16 14 12 18 18 H 1.48498 * 109.46988 * 210.00147 * 16 14 12 19 19 H 1.48497 * 109.47141 * 329.99884 * 16 14 12 20 20 C 1.46495 * 119.99714 * 5.04374 * 10 8 7 21 21 C 1.50701 * 109.47171 * 105.90279 * 20 10 8 22 22 C 1.34511 * 125.79463 * 84.16259 * 21 20 10 23 23 C 1.41377 * 106.84464 * 179.89441 * 22 21 20 24 24 C 1.34513 * 106.83936 * 0.37554 * 23 22 21 25 25 O 1.34298 * 108.42254 * 359.77061 * 24 23 22 26 26 C 1.38451 * 119.98055 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47364 * 300.00171 * 1 2 3 29 29 H 1.08997 * 109.47030 * 59.99724 * 1 2 3 30 30 H 1.08006 * 119.88213 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.89565 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.01339 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47314 * 209.99801 * 11 10 8 34 34 H 1.09004 * 109.47438 * 330.00096 * 11 10 8 35 35 H 0.96999 * 119.99916 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47285 * 225.89556 * 20 10 8 37 37 H 1.08998 * 109.47525 * 345.90135 * 20 10 8 38 38 H 1.08007 * 126.57636 * 0.03283 * 22 21 20 39 39 H 1.08004 * 126.58042 * 180.16715 * 23 22 21 40 40 H 1.08003 * 125.78857 * 179.75490 * 24 23 22 41 41 H 1.07993 * 120.11058 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9117 3.6098 0.0000 6 6 3.2893 3.6931 -0.0001 7 6 4.0580 2.5283 -0.0002 8 6 5.5341 2.6136 0.0057 9 8 6.1749 2.0008 0.8371 10 7 6.1691 3.3709 -0.9107 11 6 7.6326 3.3689 -0.9755 12 6 8.0922 2.2880 -1.9197 13 1 7.3667 1.6645 -2.4210 14 6 9.4390 2.0942 -2.1427 15 7 9.8400 1.1506 -2.9664 16 14 10.6939 3.1721 -1.2751 17 1 11.0718 2.5485 0.0186 18 1 11.9009 3.3116 -2.1287 19 1 10.1065 4.5129 -1.0254 20 6 5.3957 4.1959 -1.8420 21 6 5.5016 5.6437 -1.4375 22 6 6.4989 6.4827 -1.7704 23 6 6.1951 7.7330 -1.1846 24 6 5.0345 7.5812 -0.5217 25 8 4.6191 6.3137 -0.6784 26 6 3.4287 1.2830 0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2111 2.3163 0.0014 31 1 1.3178 4.5119 0.0000 32 1 3.7721 4.6591 -0.0001 33 1 7.9818 4.3372 -1.3342 34 1 8.0401 3.1810 0.0179 35 1 10.7875 1.0140 -3.1230 36 1 5.7890 4.0710 -2.8509 37 1 4.3505 3.8877 -1.8187 38 1 7.3644 6.2470 -2.3719 39 1 6.7838 8.6359 -1.2530 40 1 4.5236 8.3483 0.0412 41 1 4.0183 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:08 Heat of formation + Delta-G solvation = -34.363609 kcal Electronic energy + Delta-G solvation = -26209.737719 eV Core-core repulsion = 22442.806265 eV Total energy + Delta-G solvation = -3766.931454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.50204 -41.57131 -40.47487 -38.12626 -37.12415 -34.85127 -33.88710 -32.43795 -31.94428 -31.25567 -29.78379 -28.15723 -26.88872 -25.48753 -23.54330 -23.38402 -22.57246 -21.64516 -20.69977 -19.24958 -19.16213 -18.21821 -17.75883 -17.46138 -17.25605 -16.89556 -16.64988 -16.55897 -16.25853 -15.90005 -15.22200 -15.08126 -14.66760 -14.54841 -14.34287 -14.18868 -13.84042 -13.67491 -13.59494 -13.41934 -13.21319 -13.09846 -12.81741 -12.53499 -12.50416 -12.17610 -11.99491 -11.91710 -11.78434 -10.98636 -10.86551 -10.79844 -10.09119 -9.74956 -9.41948 -9.26573 -8.36573 -6.42345 -0.09526 0.34765 0.73281 1.30034 1.34237 1.42496 1.53155 1.68930 1.99207 2.21298 2.28260 2.43883 2.69105 2.97167 3.45018 3.76663 3.78086 3.99036 4.05405 4.12032 4.19569 4.27174 4.37261 4.45111 4.45923 4.48013 4.54756 4.70712 4.75499 4.81483 4.86881 4.95092 5.06233 5.14003 5.21241 5.34374 5.36482 5.37257 5.43514 5.63323 5.64838 6.18025 6.21095 6.38709 6.42057 6.58818 7.05236 7.23334 8.80090 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.005027 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.334144 B = 5568.049525 C = 7593.976848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.340 6.340 3 C 0.122 3.878 4 C -0.177 4.177 5 C -0.067 4.067 6 C -0.135 4.135 7 C -0.098 4.098 8 C 0.548 3.452 9 O -0.581 6.581 10 N -0.584 5.584 11 C 0.227 3.773 12 C -0.539 4.539 13 H 0.033 0.967 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.941 3.059 17 H -0.277 1.277 18 H -0.270 1.270 19 H -0.239 1.239 20 C 0.180 3.820 21 C -0.046 4.046 22 C -0.204 4.204 23 C -0.229 4.229 24 C -0.027 4.027 25 O -0.179 6.179 26 C -0.133 4.133 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.270 0.730 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.169 0.831 40 H 0.247 0.753 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.042 13.259 4.284 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.254 6.254 3 C 0.076 3.924 4 C -0.195 4.195 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.102 4.102 8 C 0.337 3.663 9 O -0.462 6.462 10 N -0.313 5.313 11 C 0.105 3.895 12 C -0.577 4.577 13 H 0.051 0.949 14 C -0.180 4.180 15 N -0.580 5.580 16 Si 0.763 3.237 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.163 1.163 20 C 0.058 3.942 21 C -0.097 4.097 22 C -0.224 4.224 23 C -0.247 4.247 24 C -0.094 4.094 25 O -0.075 6.075 26 C -0.153 4.153 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.189 0.811 31 H 0.191 0.809 32 H 0.161 0.839 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.186 0.814 40 H 0.263 0.737 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.718 12.527 4.726 25.513 hybrid contribution 1.520 -0.272 -0.006 1.544 sum -20.198 12.255 4.720 24.092 Atomic orbital electron populations 1.23442 0.75701 1.05788 1.02909 1.86091 1.24162 1.26549 1.88621 1.18818 0.90874 0.85869 0.96811 1.21780 1.01842 0.90944 1.04965 1.21296 0.92891 0.98755 0.95525 1.21641 0.95279 0.96866 1.01573 1.19561 0.91269 0.95113 1.04212 1.18982 0.88391 0.78355 0.80554 1.90714 1.68968 1.46823 1.39663 1.47895 1.07751 1.42631 1.33009 1.19384 0.76832 0.97122 0.96141 1.21478 0.92802 1.17400 1.26064 0.94856 1.25747 1.00392 0.96530 0.95348 1.70034 1.16572 1.33785 1.37587 0.85815 0.78732 0.80570 0.78533 1.20259 1.19523 1.16260 1.20180 0.98945 0.81724 0.93341 1.22612 0.92292 0.95103 0.99704 1.21936 1.00382 0.94609 1.05470 1.22135 0.99698 0.99235 1.03680 1.24916 0.97307 0.84394 1.02802 1.83916 1.45070 1.22734 1.55830 1.20274 0.93105 0.96735 1.05196 0.86633 0.90894 0.90852 0.81053 0.80853 0.83949 0.92753 0.96383 0.92110 0.87448 0.86430 0.84102 0.81392 0.73717 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -8.48 10.49 -92.61 -0.97 -9.45 16 3 C 0.12 3.29 6.68 22.47 0.15 3.44 16 4 C -0.18 -3.33 9.03 22.42 0.20 -3.13 16 5 C -0.07 -1.27 10.03 22.22 0.22 -1.04 16 6 C -0.14 -3.68 7.43 22.53 0.17 -3.51 16 7 C -0.10 -3.58 4.89 -20.10 -0.10 -3.68 16 8 C 0.55 25.44 7.20 86.79 0.62 26.07 16 9 O -0.58 -32.36 16.61 -3.87 -0.06 -32.42 16 10 N -0.58 -25.92 2.49 -833.91 -2.07 -27.99 16 11 C 0.23 11.58 4.20 85.63 0.36 11.94 16 12 C -0.54 -32.39 9.94 25.60 0.25 -32.13 16 13 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 14 C 0.02 1.11 5.47 84.65 0.46 1.58 16 15 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 16 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.24 -10.43 6.54 99.48 0.65 -9.77 16 20 C 0.18 6.17 5.49 85.63 0.47 6.64 16 21 C -0.05 -1.40 6.39 24.83 0.16 -1.24 16 22 C -0.20 -6.02 9.88 22.19 0.22 -5.80 16 23 C -0.23 -5.16 10.91 22.19 0.24 -4.91 16 24 C -0.03 -0.52 12.09 66.97 0.81 0.29 16 25 O -0.18 -4.47 8.16 -2.51 -0.02 -4.49 16 26 C -0.13 -4.75 9.69 22.63 0.22 -4.53 16 27 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 29 H 0.07 0.67 7.66 -2.39 -0.02 0.66 16 30 H 0.17 1.77 6.28 -2.91 -0.02 1.75 16 31 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.14 3.81 4.13 -2.91 -0.01 3.79 16 33 H 0.05 2.55 5.75 -2.39 -0.01 2.54 16 34 H 0.02 1.00 6.78 -2.39 -0.02 0.98 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.12 3.51 4.88 -2.39 -0.01 3.50 16 38 H 0.14 4.36 7.76 -2.91 -0.02 4.33 16 39 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.25 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -84.01 344.84 5.64 -78.37 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.01 Total: 17.24 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.58 Total: -8.73 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -1.77 Total: -87.59 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -1.06 Total: -46.36 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -84.01 5.64 -78.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.004 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds