Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42102 * 108.57843 * 2 1 4 4 O 1.42104 * 108.57869 * 228.97511 * 2 1 3 5 5 C 1.81401 * 101.91967 * 114.48620 * 2 1 3 6 6 C 1.53002 * 109.46711 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.46863 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47325 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47329 * 179.28556 * 8 7 6 10 10 C 1.46891 * 111.00435 * 287.85551 * 9 8 7 11 11 C 1.50701 * 109.47193 * 298.97794 * 10 9 8 12 12 H 1.07997 * 120.00166 * 4.75077 * 11 10 9 13 13 C 1.37884 * 119.99921 * 184.74795 * 11 10 9 14 14 N 1.31510 * 119.99756 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99895 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47111 * 90.00177 * 15 13 11 17 17 H 1.48500 * 109.46853 * 209.99885 * 15 13 11 18 18 H 1.48505 * 109.47178 * 329.99714 * 15 13 11 19 19 C 1.46907 * 111.00043 * 163.89981 * 9 8 7 20 20 C 1.50694 * 109.47227 * 190.00148 * 19 9 8 21 21 C 1.34514 * 125.78793 * 90.00216 * 20 19 9 22 22 C 1.41382 * 106.84331 * 180.02562 * 21 20 19 23 23 C 1.34524 * 106.83955 * 359.97438 * 22 21 20 24 24 O 1.34301 * 125.79321 * 269.69683 * 20 19 9 25 25 H 1.08996 * 109.47617 * 305.51386 * 1 2 3 26 26 H 1.09000 * 109.47214 * 65.51740 * 1 2 3 27 27 H 1.09006 * 109.47070 * 185.51388 * 1 2 3 28 28 H 1.09001 * 109.47490 * 60.00155 * 5 2 1 29 29 H 1.08999 * 109.47088 * 300.00142 * 5 2 1 30 30 H 1.08993 * 109.47564 * 60.00151 * 6 5 2 31 31 H 1.09002 * 109.47232 * 299.99399 * 6 5 2 32 32 H 1.09001 * 109.47455 * 60.00038 * 7 6 5 33 33 H 1.08999 * 109.46971 * 300.00118 * 7 6 5 34 34 H 1.09008 * 109.47310 * 59.28813 * 8 7 6 35 35 H 1.09003 * 109.47427 * 299.29120 * 8 7 6 36 36 H 1.09006 * 109.47049 * 58.97646 * 10 9 8 37 37 H 1.09001 * 109.47586 * 178.97720 * 10 9 8 38 38 H 0.97001 * 120.00060 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46708 * 70.00262 * 19 9 8 40 40 H 1.08999 * 109.47260 * 310.00505 * 19 9 8 41 41 H 1.08005 * 126.58053 * 0.03741 * 21 20 19 42 42 H 1.07998 * 126.58801 * 179.97438 * 22 21 20 43 43 H 1.07996 * 125.78629 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8184 1.7984 7 6 4.0215 -1.4394 3.1605 8 6 5.5381 -1.5228 3.3435 9 7 5.8416 -2.1033 4.6584 10 6 5.5410 -1.1516 5.7362 11 6 6.3900 0.0821 5.5682 12 1 7.0269 0.1856 4.7021 13 6 6.3536 1.0789 6.5202 14 7 7.0941 2.1557 6.3733 15 14 5.2526 0.8996 8.0185 16 1 6.0053 0.2285 9.1085 17 1 4.8143 2.2433 8.4742 18 1 4.0628 0.0848 7.6638 19 6 7.2390 -2.5513 4.7262 20 6 7.4482 -3.3555 5.9834 21 6 7.2916 -4.6863 6.1011 22 6 7.5885 -5.0166 7.4433 23 6 7.9094 -3.8679 8.0655 24 8 7.8283 -2.8660 7.1748 25 1 -0.3634 0.5969 0.8364 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0230 0.0988 28 1 1.7610 -1.7370 1.6666 29 1 1.7609 -0.1171 2.4042 30 1 4.1328 0.1830 1.7474 31 1 4.1335 -1.4368 1.0095 32 1 3.5942 -2.4409 3.2112 33 1 3.5933 -0.8214 3.9497 34 1 5.9673 -0.5227 3.2801 35 1 5.9645 -2.1513 2.5616 36 1 4.4872 -0.8760 5.6941 37 1 5.7577 -1.6133 6.6995 38 1 7.0688 2.8568 7.0432 39 1 7.8987 -1.6836 4.7360 40 1 7.4649 -3.1697 3.8575 41 1 6.9959 -5.3712 5.3200 42 1 7.5626 -6.0020 7.8846 43 1 8.1894 -3.7690 9.1038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164098903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = -82.677498 kcal Electronic energy + Delta-G solvation = -24309.979848 eV Core-core repulsion = 20676.397297 eV Total energy + Delta-G solvation = -3633.582550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.35000 -39.02935 -37.92039 -36.98249 -35.88167 -34.56434 -33.76886 -31.80326 -30.60152 -30.15681 -28.75672 -26.07772 -24.96726 -22.79207 -22.47406 -21.48017 -20.97197 -19.69882 -19.11809 -18.00680 -17.42323 -17.29840 -17.15272 -16.87655 -16.56255 -16.28015 -16.00322 -15.58887 -15.44714 -14.52295 -14.25836 -14.08258 -13.88133 -13.83960 -13.57690 -13.52933 -13.44229 -13.31496 -13.05010 -13.04913 -12.96121 -12.84964 -12.59707 -12.43091 -12.19602 -12.04011 -11.89789 -11.84875 -11.67765 -11.34833 -11.12951 -10.78997 -10.68718 -9.36040 -8.99813 -8.31333 -6.34087 -0.83999 0.92606 1.30619 1.31743 1.42294 1.83149 1.97756 2.31123 2.31818 2.80510 3.05040 3.20579 3.34829 3.75686 3.91499 3.93229 4.15484 4.19063 4.25695 4.29241 4.32309 4.38990 4.52022 4.56190 4.69016 4.73528 4.84223 4.92484 4.98935 5.01768 5.02984 5.10230 5.11172 5.17634 5.30876 5.34233 5.45308 5.53410 5.78537 6.03978 6.27980 6.34326 6.44932 6.70603 7.31654 8.84947 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.003449 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.532526 B = 8115.907528 C = 9493.793126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.420 3.580 3 O -0.997 6.997 4 O -0.986 6.986 5 C -0.597 4.597 6 C -0.118 4.118 7 C -0.094 4.094 8 C 0.049 3.951 9 N -0.521 5.521 10 C 0.165 3.835 11 C -0.539 4.539 12 H 0.039 0.961 13 C 0.016 3.984 14 N -0.946 5.946 15 Si 0.937 3.063 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.246 1.246 19 C 0.132 3.868 20 C -0.012 4.012 21 C -0.203 4.203 22 C -0.216 4.216 23 C -0.066 4.066 24 O -0.203 6.203 25 H 0.150 0.850 26 H 0.136 0.864 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.018 0.982 38 H 0.264 0.736 39 H 0.027 0.973 40 H 0.120 0.880 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 -13.288 -6.071 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.608 3.392 3 O -0.994 6.994 4 O -0.983 6.983 5 C -0.727 4.727 6 C -0.157 4.157 7 C -0.133 4.133 8 C -0.079 4.079 9 N -0.243 5.243 10 C 0.037 3.963 11 C -0.578 4.578 12 H 0.057 0.943 13 C -0.182 4.182 14 N -0.586 5.586 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.170 1.170 19 C 0.004 3.996 20 C -0.062 4.062 21 C -0.223 4.223 22 C -0.235 4.235 23 C -0.133 4.133 24 O -0.099 6.099 25 H 0.168 0.832 26 H 0.154 0.846 27 H 0.175 0.825 28 H 0.185 0.815 29 H 0.167 0.833 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.137 0.863 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.699 -12.923 -6.580 19.276 hybrid contribution 0.209 1.099 1.368 1.767 sum -12.490 -11.824 -5.213 17.972 Atomic orbital electron populations 1.30054 1.21359 1.14039 1.13190 1.07477 0.80129 0.74066 0.77484 1.93547 1.81294 1.37249 1.87319 1.93529 1.81179 1.67470 1.56159 1.30222 1.04323 1.16138 1.22034 1.21297 0.92789 1.02148 0.99489 1.21373 0.94513 1.01836 0.95557 1.22155 0.97486 0.98036 0.90200 1.62550 1.19260 1.38596 1.03932 1.19977 0.95902 0.89115 0.91269 1.21806 1.25285 1.03400 1.07312 0.94331 1.25771 0.96654 0.94657 1.01093 1.70066 1.42169 1.09443 1.36965 0.85858 0.80426 0.77724 0.79874 1.19849 1.20829 1.16952 1.20485 0.90735 0.96846 0.91498 1.22526 1.03611 0.93935 0.86174 1.21795 1.07543 0.94114 0.98842 1.22132 1.06948 1.00159 0.94246 1.24739 1.06467 0.85729 0.96369 1.84157 1.67477 1.38759 1.19518 0.83201 0.84582 0.82451 0.81496 0.83288 0.92368 0.89565 0.89366 0.92906 0.96099 0.89738 0.94869 0.96437 0.92687 0.95426 0.86253 0.81605 0.80670 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.08 10.62 113.37 1.20 -2.88 16 2 S 2.42 41.67 5.36 -56.49 -0.30 41.37 16 3 O -1.00 -28.15 18.10 -127.37 -2.31 -30.45 16 4 O -0.99 -24.43 18.10 -127.37 -2.31 -26.74 16 5 C -0.60 -9.01 5.81 71.98 0.42 -8.60 16 6 C -0.12 -2.91 5.22 30.60 0.16 -2.75 16 7 C -0.09 -2.71 5.28 30.59 0.16 -2.54 16 8 C 0.05 1.73 4.80 86.30 0.41 2.15 16 9 N -0.52 -20.50 4.66 -905.36 -4.22 -24.72 16 10 C 0.16 7.81 3.86 85.56 0.33 8.14 16 11 C -0.54 -30.48 7.89 25.60 0.20 -30.28 16 12 H 0.04 2.42 6.20 -2.91 -0.02 2.40 16 13 C 0.02 0.95 5.47 84.66 0.46 1.42 16 14 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 15 Si 0.94 44.85 27.38 68.60 1.88 46.73 16 16 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.25 -10.87 6.68 99.48 0.66 -10.21 16 19 C 0.13 5.04 5.31 85.55 0.45 5.49 16 20 C -0.01 -0.46 5.88 24.83 0.15 -0.31 16 21 C -0.20 -6.16 10.81 22.19 0.24 -5.92 16 22 C -0.22 -5.85 10.91 22.19 0.24 -5.61 16 23 C -0.07 -2.02 12.09 66.97 0.81 -1.21 16 24 O -0.20 -8.32 9.98 -2.46 -0.02 -8.34 16 25 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.16 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.71 6.73 -2.39 -0.02 1.70 16 34 H 0.02 0.90 6.15 -2.38 -0.01 0.89 16 35 H 0.08 2.49 7.81 -2.39 -0.02 2.47 16 36 H 0.03 1.55 6.05 -2.38 -0.01 1.54 16 37 H 0.02 0.87 5.83 -2.39 -0.01 0.86 16 38 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.03 1.26 6.59 -2.39 -0.02 1.25 16 40 H 0.12 3.62 7.86 -2.39 -0.02 3.60 16 41 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.22 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -86.41 363.19 -0.78 -87.19 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.95 Total: 17.19 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 5.25 Total: -42.90 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -3.92 Total: -84.03 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -4.63 Total: -65.53 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Atomic # 16 Polarization: 41.67 SS G_CDS: -0.30 Total: 41.37 kcal Total: -86.41 -0.78 -87.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164098903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -86.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds