Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47284 * 2 1 4 4 C 1.34895 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.21624 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.46474 * 119.99730 * 179.97438 * 4 3 2 7 7 C 1.36641 * 125.99226 * 180.02562 * 6 4 3 8 8 C 1.40312 * 106.69970 * 180.02562 * 7 6 4 9 9 C 1.35169 * 107.12737 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.60894 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.46865 * 90.00498 * 10 9 8 12 12 C 1.38857 * 120.00003 * 179.97438 * 11 10 9 13 13 C 1.39562 * 119.84458 * 179.97438 * 12 11 10 14 14 C 1.36338 * 120.16376 * 180.25516 * 13 12 11 15 15 C 1.40886 * 119.83460 * 359.49783 * 14 13 12 16 16 C 1.41137 * 120.15606 * 180.25190 * 15 14 13 17 17 H 1.07995 * 119.99843 * 24.88071 * 16 15 14 18 18 C 1.39868 * 119.99750 * 204.88107 * 16 15 14 19 19 N 1.30905 * 120.00320 * 17.97818 * 18 16 15 20 20 Si 1.86807 * 119.99880 * 197.97722 * 18 16 15 21 21 H 1.48501 * 109.46869 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46809 * 120.00160 * 20 18 16 23 23 H 1.48506 * 109.47039 * 240.00216 * 20 18 16 24 24 C 1.40884 * 119.68868 * 0.52410 * 15 14 13 25 25 C 1.36337 * 119.83583 * 359.72616 * 24 15 14 26 26 O 1.33906 * 108.78143 * 0.26940 * 9 8 7 27 27 H 1.09003 * 109.46704 * 60.00219 * 1 2 3 28 28 H 1.09005 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47139 * 300.00281 * 1 2 3 30 30 H 1.09004 * 109.47254 * 239.99168 * 2 1 3 31 31 H 1.09003 * 109.46704 * 119.99780 * 2 1 3 32 32 H 1.07995 * 126.65328 * 359.97438 * 7 6 4 33 33 H 1.08005 * 126.43862 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47001 * 330.00473 * 10 9 8 35 35 H 1.09006 * 109.47036 * 210.00296 * 10 9 8 36 36 H 0.97006 * 120.00694 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.92372 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.08583 * 179.74687 * 14 13 12 39 39 H 0.96992 * 120.00260 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.08483 * 179.70992 * 24 15 14 41 41 H 1.08005 * 119.92181 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5811 0.0005 6 6 3.9112 2.8991 0.0000 7 6 5.2398 3.2186 0.0000 8 6 5.3176 4.6196 0.0000 9 6 4.0499 5.0887 -0.0005 10 6 3.6521 6.5423 -0.0013 11 7 3.5235 7.0126 -1.3827 12 6 3.1627 8.3291 -1.6371 13 6 3.0417 8.7738 -2.9544 14 6 2.6929 10.0665 -3.2117 15 6 2.4441 10.9512 -2.1439 16 6 2.0775 12.2893 -2.4025 17 1 1.6029 12.5481 -3.3375 18 6 2.3287 13.2802 -1.4479 19 7 3.1954 13.0628 -0.4912 20 14 1.4273 14.9139 -1.5380 21 1 0.5085 14.9086 -2.7046 22 1 0.6452 15.1170 -0.2921 23 1 2.4122 16.0150 -1.6892 24 6 2.5688 10.4954 -0.8166 25 6 2.9233 9.2014 -0.5743 26 8 3.2056 4.0493 0.0051 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 6.0692 2.5270 0.0007 33 1 6.2207 5.2119 -0.0004 34 1 4.4146 7.1278 0.5124 35 1 2.6977 6.6580 0.5123 36 1 3.6903 6.4044 -2.1198 37 1 3.2291 8.0936 -3.7721 38 1 2.6035 10.4104 -4.2316 39 1 3.3699 13.7501 0.1705 40 1 2.3842 11.1694 0.0068 41 1 3.0197 8.8507 0.4427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184746188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -46.003085 kcal Electronic energy + Delta-G solvation = -24189.007382 eV Core-core repulsion = 20421.571202 eV Total energy + Delta-G solvation = -3767.436180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.99483 -40.51207 -38.04068 -37.02041 -35.38453 -33.49340 -33.08318 -32.18810 -30.85498 -29.51976 -28.68743 -26.61224 -24.39353 -23.75966 -22.60794 -21.96275 -21.15065 -20.61881 -20.01131 -18.73688 -17.34468 -17.25587 -17.18515 -16.60423 -16.21179 -15.32706 -15.01949 -14.63526 -14.32273 -14.22514 -13.89738 -13.69226 -13.52959 -13.24036 -13.09272 -12.78235 -12.70522 -12.35955 -12.31632 -12.01820 -11.88322 -11.74373 -11.28679 -11.18907 -11.07115 -10.93288 -10.86167 -10.51658 -10.32464 -9.74704 -9.37127 -9.30897 -8.92427 -8.63504 -7.55048 -6.69626 -6.48079 -4.08596 0.52674 1.93324 1.97176 2.59899 2.66943 2.86430 3.05388 3.13741 3.19092 3.30029 4.02787 4.17635 4.36371 4.54401 4.55858 4.59586 4.60274 4.72047 4.86581 5.20935 5.27002 5.34372 5.39966 5.44032 5.58231 5.65953 5.69937 5.78935 5.96206 6.06495 6.20795 6.25343 6.64371 6.80281 6.88244 7.14952 7.30861 7.32325 7.46291 7.63376 7.76802 8.10591 8.20318 8.40017 8.57387 8.73088 9.01768 9.09414 10.32877 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.002122 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.821336 B =13191.709473 C =13659.456295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.346 6.346 4 C 0.557 3.443 5 O -0.492 6.492 6 C -0.074 4.074 7 C -0.100 4.100 8 C -0.209 4.209 9 C 0.036 3.964 10 C 0.212 3.788 11 N -0.758 5.758 12 C 0.086 3.914 13 C -0.152 4.152 14 C -0.187 4.187 15 C 0.077 3.923 16 C -0.465 4.465 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.806 5.806 20 Si 0.903 3.097 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.277 1.277 24 C -0.126 4.126 25 C -0.162 4.162 26 O -0.143 6.143 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.388 0.612 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.276 0.724 40 H 0.120 0.880 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 -19.893 3.801 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.263 6.263 4 C 0.403 3.597 5 O -0.382 6.382 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.229 4.229 9 C -0.017 4.017 10 C 0.087 3.913 11 N -0.396 5.396 12 C -0.010 4.010 13 C -0.174 4.174 14 C -0.207 4.207 15 C 0.074 3.926 16 C -0.496 4.496 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.433 5.433 20 Si 0.728 3.272 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.146 4.146 25 C -0.184 4.184 26 O -0.038 6.038 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.221 0.779 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.070 -20.044 4.199 20.479 hybrid contribution 0.014 0.353 -0.218 0.415 sum -0.057 -19.690 3.981 20.089 Atomic orbital electron populations 1.21827 0.92191 1.03130 1.03969 1.23141 0.95740 0.79357 1.02874 1.86692 1.22880 1.32930 1.83765 1.19137 0.81089 0.86437 0.73085 1.90939 1.60680 1.39709 1.46852 1.20660 0.90418 0.83864 1.17542 1.22003 0.94937 0.96207 0.98803 1.21736 0.98116 0.93990 1.09059 1.23254 0.88381 0.89789 1.00326 1.19565 1.02119 0.81946 0.87681 1.43754 1.82228 1.10148 1.03481 1.17260 1.06765 0.83407 0.93541 1.19800 1.08156 0.96452 0.92986 1.20556 1.08722 0.93794 0.97675 1.17527 0.91202 0.92956 0.90947 1.19414 1.35676 0.92057 1.02459 0.90820 1.25813 0.93417 1.00401 0.94478 1.69854 1.25678 1.34889 1.12867 0.86357 0.80212 0.81443 0.79208 1.18599 1.19921 1.20261 1.20935 1.02596 0.93351 0.97672 1.20087 1.08243 0.94802 0.95259 1.84146 1.36726 1.13223 1.69655 0.91196 0.89957 0.91240 0.90848 0.90873 0.81747 0.81789 0.89419 0.91066 0.77896 0.89488 0.88915 0.91302 0.86268 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -4.05 10.23 -42.47 -0.43 -4.48 16 4 C 0.56 7.05 7.93 34.05 0.27 7.32 16 5 O -0.49 -6.72 16.66 -19.36 -0.32 -7.04 16 6 C -0.07 -0.95 7.18 -36.84 -0.26 -1.21 16 7 C -0.10 -1.10 10.62 -39.38 -0.42 -1.52 16 8 C -0.21 -2.31 10.77 -39.89 -0.43 -2.74 16 9 C 0.04 0.46 6.68 -35.40 -0.24 0.22 16 10 C 0.21 2.94 5.42 -5.20 -0.03 2.91 16 11 N -0.76 -12.60 5.69 -59.67 -0.34 -12.94 16 12 C 0.09 1.80 6.67 -83.69 -0.56 1.24 16 13 C -0.15 -3.32 9.82 -39.77 -0.39 -3.71 16 14 C -0.19 -4.54 9.74 -39.26 -0.38 -4.92 16 15 C 0.08 2.03 5.57 -106.79 -0.60 1.43 16 16 C -0.47 -12.41 9.03 -37.87 -0.34 -12.75 16 17 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 18 C 0.07 1.88 5.13 -17.34 -0.09 1.80 16 19 N -0.81 -20.94 10.96 55.54 0.61 -20.33 16 20 Si 0.90 18.91 29.60 -169.99 -5.03 13.88 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 24 C -0.13 -3.19 8.64 -39.27 -0.34 -3.53 16 25 C -0.16 -3.62 9.23 -39.77 -0.37 -3.99 16 26 O -0.14 -1.96 10.67 4.76 0.05 -1.91 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.09 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.07 1.01 7.93 -51.93 -0.41 0.59 16 36 H 0.39 5.97 8.46 -40.82 -0.35 5.62 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 41 H 0.09 1.75 6.68 -52.48 -0.35 1.40 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -29.32 360.35 -8.79 -38.11 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.20 Total: 8.55 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -3.56 Total: -19.26 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.27 Total: -33.27 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.71 Total: -13.44 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.32 -8.79 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184746188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.891 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds