Wall clock time and date at job start Tue Mar 31 2020 10:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47284 * 2 1 4 4 C 1.34895 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.21624 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.46474 * 119.99730 * 179.97438 * 4 3 2 7 7 C 1.36641 * 125.99226 * 180.02562 * 6 4 3 8 8 C 1.40312 * 106.69970 * 180.02562 * 7 6 4 9 9 C 1.35169 * 107.12737 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.60894 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.46865 * 90.00498 * 10 9 8 12 12 C 1.38857 * 120.00003 * 179.97438 * 11 10 9 13 13 C 1.39562 * 119.84458 * 179.97438 * 12 11 10 14 14 C 1.36338 * 120.16376 * 180.25516 * 13 12 11 15 15 C 1.40886 * 119.83460 * 359.49783 * 14 13 12 16 16 C 1.41137 * 120.15606 * 180.25190 * 15 14 13 17 17 H 1.07995 * 119.99843 * 24.88071 * 16 15 14 18 18 C 1.39868 * 119.99750 * 204.88107 * 16 15 14 19 19 N 1.30905 * 120.00320 * 17.97818 * 18 16 15 20 20 Si 1.86807 * 119.99880 * 197.97722 * 18 16 15 21 21 H 1.48501 * 109.46869 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46809 * 120.00160 * 20 18 16 23 23 H 1.48506 * 109.47039 * 240.00216 * 20 18 16 24 24 C 1.40884 * 119.68868 * 0.52410 * 15 14 13 25 25 C 1.36337 * 119.83583 * 359.72616 * 24 15 14 26 26 O 1.33906 * 108.78143 * 0.26940 * 9 8 7 27 27 H 1.09003 * 109.46704 * 60.00219 * 1 2 3 28 28 H 1.09005 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47139 * 300.00281 * 1 2 3 30 30 H 1.09004 * 109.47254 * 239.99168 * 2 1 3 31 31 H 1.09003 * 109.46704 * 119.99780 * 2 1 3 32 32 H 1.07995 * 126.65328 * 359.97438 * 7 6 4 33 33 H 1.08005 * 126.43862 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47001 * 330.00473 * 10 9 8 35 35 H 1.09006 * 109.47036 * 210.00296 * 10 9 8 36 36 H 0.97006 * 120.00694 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.92372 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.08583 * 179.74687 * 14 13 12 39 39 H 0.96992 * 120.00260 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.08483 * 179.70992 * 24 15 14 41 41 H 1.08005 * 119.92181 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5811 0.0005 6 6 3.9112 2.8991 0.0000 7 6 5.2398 3.2186 0.0000 8 6 5.3176 4.6196 0.0000 9 6 4.0499 5.0887 -0.0005 10 6 3.6521 6.5423 -0.0013 11 7 3.5235 7.0126 -1.3827 12 6 3.1627 8.3291 -1.6371 13 6 3.0417 8.7738 -2.9544 14 6 2.6929 10.0665 -3.2117 15 6 2.4441 10.9512 -2.1439 16 6 2.0775 12.2893 -2.4025 17 1 1.6029 12.5481 -3.3375 18 6 2.3287 13.2802 -1.4479 19 7 3.1954 13.0628 -0.4912 20 14 1.4273 14.9139 -1.5380 21 1 0.5085 14.9086 -2.7046 22 1 0.6452 15.1170 -0.2921 23 1 2.4122 16.0150 -1.6892 24 6 2.5688 10.4954 -0.8166 25 6 2.9233 9.2014 -0.5743 26 8 3.2056 4.0493 0.0051 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 6.0692 2.5270 0.0007 33 1 6.2207 5.2119 -0.0004 34 1 4.4146 7.1278 0.5124 35 1 2.6977 6.6580 0.5123 36 1 3.6903 6.4044 -2.1198 37 1 3.2291 8.0936 -3.7721 38 1 2.6035 10.4104 -4.2316 39 1 3.3699 13.7501 0.1705 40 1 2.3842 11.1694 0.0068 41 1 3.0197 8.8507 0.4427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184746188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:56 Heat of formation + Delta-G solvation = -60.976022 kcal Electronic energy + Delta-G solvation = -24189.656657 eV Core-core repulsion = 20421.571202 eV Total energy + Delta-G solvation = -3768.085455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.94061 -41.41879 -39.76101 -37.91459 -36.93112 -34.99571 -34.24973 -32.89069 -32.07152 -31.33550 -30.22078 -27.92044 -25.88358 -24.82250 -23.45059 -23.09368 -22.64603 -21.88532 -21.44598 -19.65266 -19.14105 -18.36971 -18.11728 -17.89184 -17.22019 -16.81891 -16.57121 -15.92661 -15.54986 -15.19551 -15.09663 -14.84935 -14.46726 -14.40525 -14.33043 -14.10016 -13.88466 -13.66024 -13.52639 -13.37025 -13.06886 -12.88902 -12.73720 -12.61060 -12.58734 -12.26438 -12.12566 -11.64411 -11.56705 -11.23182 -11.16962 -11.08104 -10.35116 -9.89851 -9.38807 -8.54648 -8.20314 -6.00535 -0.42631 1.01037 1.09967 1.11074 1.20243 1.42146 1.55722 1.58795 1.67926 1.78055 2.28806 2.85136 2.93083 3.33205 3.69527 3.74774 3.86708 3.96103 3.98942 4.26963 4.30003 4.35831 4.44162 4.49242 4.52384 4.67529 4.68881 4.83463 4.87368 5.00384 5.05307 5.12348 5.21107 5.27607 5.28428 5.46600 5.67334 5.70892 5.79822 5.96156 6.20479 6.38888 6.41539 6.63985 6.84522 7.06981 7.10103 7.25689 8.49019 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.002122 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.821336 B =13191.709473 C =13659.456295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.558 3.442 5 O -0.508 6.508 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.194 4.194 9 C 0.023 3.977 10 C 0.211 3.789 11 N -0.749 5.749 12 C 0.111 3.889 13 C -0.161 4.161 14 C -0.197 4.197 15 C 0.036 3.964 16 C -0.504 4.504 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.838 5.838 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.269 1.269 24 C -0.144 4.144 25 C -0.170 4.170 26 O -0.160 6.160 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.283 0.717 40 H 0.101 0.899 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -21.400 4.083 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.404 3.596 5 O -0.399 6.399 6 C -0.141 4.141 7 C -0.110 4.110 8 C -0.213 4.213 9 C -0.030 4.030 10 C 0.087 3.913 11 N -0.386 5.386 12 C 0.013 3.987 13 C -0.183 4.183 14 C -0.217 4.217 15 C 0.034 3.966 16 C -0.535 4.535 17 H 0.085 0.915 18 C -0.180 4.180 19 N -0.466 5.466 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.194 1.194 24 C -0.164 4.164 25 C -0.192 4.192 26 O -0.056 6.056 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.203 0.797 33 H 0.205 0.795 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.433 -21.599 4.482 22.064 hybrid contribution -0.100 0.549 -0.301 0.634 sum 0.333 -21.051 4.182 21.465 Atomic orbital electron populations 1.21864 0.90543 1.04689 1.03563 1.23471 0.97049 0.77971 1.03485 1.86692 1.22408 1.34995 1.83412 1.19189 0.81341 0.86374 0.72710 1.90921 1.61022 1.40118 1.47828 1.20908 0.91143 0.83695 1.18371 1.22324 0.94829 0.96628 0.97263 1.22020 0.98170 0.94066 1.07038 1.23055 0.88884 0.89069 1.01996 1.19626 1.02632 0.83102 0.85921 1.43778 1.80924 1.08552 1.05367 1.17319 1.03753 0.84835 0.92840 1.20086 1.07678 0.96069 0.94450 1.20747 1.08742 0.94772 0.97470 1.17854 0.93059 0.93691 0.92043 1.19609 1.37581 0.93149 1.03187 0.91542 1.26586 0.93749 1.03744 0.93899 1.69905 1.26723 1.36338 1.13680 0.85276 0.78889 0.76954 0.79229 1.18587 1.19111 1.19424 1.20882 1.04143 0.94532 0.96890 1.20286 1.07903 0.93950 0.97046 1.84112 1.37482 1.13702 1.70302 0.91677 0.87399 0.91514 0.90342 0.90194 0.79682 0.79521 0.87989 0.91196 0.76831 0.86595 0.88604 0.90702 0.88113 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.81 6.20 71.98 0.45 1.26 16 3 O -0.36 -8.13 10.23 -56.71 -0.58 -8.71 16 4 C 0.56 13.55 7.93 69.97 0.55 14.11 16 5 O -0.51 -13.30 16.66 19.43 0.32 -12.98 16 6 C -0.09 -2.17 7.18 24.04 0.17 -2.00 16 7 C -0.09 -1.76 10.62 22.40 0.24 -1.53 16 8 C -0.19 -3.64 10.77 22.07 0.24 -3.40 16 9 C 0.02 0.52 6.68 24.98 0.17 0.69 16 10 C 0.21 5.32 5.42 85.64 0.46 5.79 16 11 N -0.75 -22.92 5.69 -342.71 -1.95 -24.87 16 12 C 0.11 4.44 6.67 38.67 0.26 4.69 16 13 C -0.16 -6.82 9.82 22.15 0.22 -6.60 16 14 C -0.20 -9.66 9.74 22.47 0.22 -9.44 16 15 C 0.04 1.98 5.57 -21.27 -0.12 1.87 16 16 C -0.50 -27.94 9.03 23.38 0.21 -27.73 16 17 H 0.07 3.60 7.91 -2.91 -0.02 3.58 16 18 C 0.03 1.68 5.13 85.23 0.44 2.12 16 19 N -0.84 -44.78 10.96 21.82 0.24 -44.54 16 20 Si 0.97 39.58 29.60 68.60 2.03 41.61 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 C -0.14 -7.52 8.64 22.47 0.19 -7.32 16 25 C -0.17 -7.47 9.23 22.15 0.20 -7.27 16 26 O -0.16 -4.16 10.67 -4.83 -0.05 -4.21 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.10 2.35 7.93 -2.39 -0.02 2.34 16 35 H 0.07 1.83 7.93 -2.38 -0.02 1.81 16 36 H 0.40 11.01 8.46 -92.70 -0.78 10.22 16 37 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 40 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 41 H 0.11 4.32 6.68 -2.91 -0.02 4.30 16 Total: -1.00 -64.64 360.35 4.93 -59.71 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.28 Total: 29.61 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.64 Total: -35.63 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.71 Total: -69.40 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.31 Total: -25.90 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -64.64 4.93 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184746188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.266 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds