Wall clock time and date at job start Tue Mar 31 2020 10:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47164 * 166.17583 * 3 2 1 5 5 C 1.36753 * 120.00315 * 96.06620 * 4 3 2 6 6 H 1.08000 * 120.00298 * 162.09898 * 5 4 3 7 7 C 1.39095 * 119.99721 * 342.10764 * 5 4 3 8 8 N 1.31345 * 119.99783 * 338.88638 * 7 5 4 9 9 Si 1.86800 * 120.00201 * 158.88621 * 7 5 4 10 10 H 1.48505 * 109.46974 * 89.99844 * 9 7 5 11 11 H 1.48496 * 109.47325 * 209.99666 * 9 7 5 12 12 H 1.48497 * 109.46990 * 330.00028 * 9 7 5 13 13 C 1.34786 * 120.00337 * 276.07231 * 4 3 2 14 14 O 1.21774 * 120.00261 * 179.97438 * 13 4 3 15 15 C 1.41776 * 119.99494 * 359.97438 * 13 4 3 16 16 C 1.35163 * 120.00055 * 180.02562 * 15 13 4 17 17 C 1.46885 * 120.00203 * 180.02562 * 16 15 13 18 18 C 1.39949 * 120.19157 * 0.02562 * 17 16 15 19 19 C 1.38191 * 119.82695 * 180.02562 * 18 17 16 20 20 O 1.35975 * 119.90135 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00638 * 180.02562 * 20 19 18 22 22 C 1.39006 * 120.20464 * 359.97438 * 19 18 17 23 23 C 1.38114 * 120.39192 * 0.02562 * 22 19 18 24 24 C 1.38573 * 120.16949 * 359.72157 * 23 22 19 25 25 O 1.35764 * 120.10591 * 180.29982 * 24 23 22 26 26 C 1.42899 * 117.00489 * 0.23057 * 25 24 23 27 27 H 4.40640 * 5.51470 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46797 * 46.17940 * 3 2 1 29 29 H 1.09000 * 109.47294 * 286.17797 * 3 2 1 30 30 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.00382 * 0.02562 * 15 13 4 32 32 H 1.08002 * 119.99639 * 0.02562 * 16 15 13 33 33 H 1.08006 * 120.09074 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47350 * 180.02562 * 21 20 19 35 35 H 1.09004 * 109.46250 * 300.00162 * 21 20 19 36 36 H 1.08992 * 109.46873 * 59.99537 * 21 20 19 37 37 H 1.08000 * 119.80601 * 179.97438 * 22 19 18 38 38 H 1.08000 * 119.91651 * 180.02562 * 23 22 19 39 39 H 1.09004 * 109.46781 * 60.00305 * 26 25 24 40 40 H 1.08990 * 109.47611 * 180.02562 * 26 25 24 41 41 H 1.09000 * 109.47144 * 300.00523 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3421 -0.3300 5 6 3.4793 2.2091 0.6694 6 1 4.0976 3.0671 0.4503 7 6 3.0345 1.9860 1.9683 8 7 1.9834 1.2277 2.1814 9 14 3.9320 2.7647 3.4097 10 1 3.3403 4.0954 3.7007 11 1 3.8004 1.8926 4.6043 12 1 5.3686 2.9254 3.0698 13 6 3.2418 1.7218 -1.6188 14 8 3.6468 2.8370 -1.8931 15 6 2.8839 0.8227 -2.6550 16 6 2.9928 1.2032 -3.9474 17 6 2.6215 0.2720 -5.0209 18 6 2.1541 -1.0100 -4.7102 19 6 1.8074 -1.8802 -5.7262 20 8 1.3536 -3.1263 -5.4260 21 6 1.0135 -3.9751 -6.5242 22 6 1.9212 -1.4856 -7.0542 23 6 2.3815 -0.2225 -7.3708 24 6 2.7286 0.6648 -6.3645 25 8 3.1751 1.9082 -6.6771 26 6 3.2578 2.2380 -8.0650 27 1 -1.0502 -0.0003 0.0003 28 1 3.0095 -0.7107 -0.7415 29 1 3.0095 -0.2855 0.9870 30 1 1.6730 1.0723 3.0871 31 1 2.5244 -0.1662 -2.4117 32 1 3.3527 2.1920 -4.1906 33 1 2.0645 -1.3185 -3.6790 34 1 0.6663 -4.9367 -6.1463 35 1 0.2226 -3.5090 -7.1120 36 1 1.8916 -4.1265 -7.1518 37 1 1.6488 -2.1710 -7.8431 38 1 2.4664 0.0763 -8.4052 39 1 2.2688 2.1600 -8.5166 40 1 3.6283 3.2571 -8.1749 41 1 3.9398 1.5483 -8.5624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281597315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:31 Heat of formation + Delta-G solvation = 15.750147 kcal Electronic energy + Delta-G solvation = -25348.324129 eV Core-core repulsion = 21583.565770 eV Total energy + Delta-G solvation = -3764.758358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44831 -38.99563 -38.75443 -36.51907 -35.23430 -33.40935 -32.13604 -31.21240 -30.14750 -29.43950 -27.40968 -26.95293 -26.48847 -25.19232 -23.45600 -21.97784 -20.73873 -18.38388 -18.15562 -17.83830 -17.48634 -16.84405 -16.45148 -16.09679 -15.90490 -15.58233 -14.82607 -14.70192 -14.49552 -14.23209 -13.99633 -13.48407 -13.37111 -12.88204 -12.87253 -12.65536 -12.39666 -12.29065 -12.12000 -11.77346 -11.70876 -11.61155 -11.04688 -10.87862 -10.74075 -10.59511 -10.55421 -10.35099 -9.89083 -9.34057 -9.30120 -8.89311 -8.37666 -8.25888 -7.88577 -7.48437 -6.41688 -3.82723 0.78818 1.45538 2.41379 3.16811 3.18561 3.23338 3.29855 3.34810 3.76651 3.84848 4.06081 4.16797 4.48615 4.62451 4.65472 4.89473 4.98513 4.98879 5.02536 5.06160 5.10164 5.20598 5.28876 5.38208 5.41407 5.44038 5.55306 5.70866 5.77641 5.96850 6.13779 6.26985 6.29745 6.40855 6.54449 6.73484 6.96532 7.04579 7.12734 7.27289 7.48642 7.48686 8.07053 8.42018 8.83868 9.12921 9.31947 9.96738 10.57758 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003485 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.127557 B = 8031.463007 C = 9457.617398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.116 4.116 3 C 0.228 3.772 4 N -0.424 5.424 5 C -0.303 4.303 6 H 0.108 0.892 7 C 0.029 3.971 8 N -0.850 5.850 9 Si 0.924 3.076 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.463 3.537 14 O -0.594 6.594 15 C -0.160 4.160 16 C -0.073 4.073 17 C -0.033 4.033 18 C -0.109 4.109 19 C 0.094 3.906 20 O -0.316 6.316 21 C 0.029 3.971 22 C -0.175 4.175 23 C -0.171 4.171 24 C 0.102 3.898 25 O -0.306 6.306 26 C 0.028 3.972 27 H 0.199 0.801 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.271 0.729 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -9.667 -17.571 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.118 4.118 3 C 0.105 3.895 4 N -0.140 5.140 5 C -0.431 4.431 6 H 0.126 0.874 7 C -0.176 4.176 8 N -0.487 5.487 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.257 3.743 14 O -0.481 6.481 15 C -0.181 4.181 16 C -0.094 4.094 17 C -0.034 4.034 18 C -0.128 4.128 19 C 0.049 3.951 20 O -0.230 6.230 21 C -0.066 4.066 22 C -0.194 4.194 23 C -0.190 4.190 24 C 0.057 3.943 25 O -0.219 6.219 26 C -0.067 4.067 27 H 0.217 0.783 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.403 -9.121 -17.136 19.463 hybrid contribution -0.254 0.081 0.285 0.391 sum -1.657 -9.039 -16.851 19.194 Atomic orbital electron populations 1.24270 0.95366 1.02281 1.05496 1.23106 0.94288 0.98202 0.96196 1.18344 0.84429 0.84848 1.01899 1.43769 1.53624 1.11507 1.05091 1.19783 1.28809 1.08350 0.86167 0.87410 1.25408 0.95209 0.97700 0.99311 1.70071 1.19235 1.37121 1.22271 0.85969 0.80255 0.78887 0.79916 1.20245 1.20700 1.19175 1.16775 0.86504 0.88055 0.82950 1.90652 1.52453 1.22250 1.82766 1.22350 1.01622 1.00043 0.94055 1.21909 0.98172 0.98706 0.90639 1.18238 1.01098 0.93490 0.90534 1.20534 1.01585 0.91480 0.99208 1.18718 0.98226 0.85287 0.92871 1.86105 1.80121 1.22465 1.34356 1.22997 0.99822 0.93979 0.89809 1.20980 1.05895 0.97544 0.95030 1.20868 1.05175 0.94388 0.98565 1.19023 0.97631 0.84827 0.92828 1.86109 1.80805 1.28667 1.26323 1.23038 1.01151 1.01960 0.80588 0.78348 0.91607 0.87205 0.91822 0.86611 0.84414 0.83953 0.88421 0.92930 0.92929 0.85492 0.85271 0.92914 0.88237 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.42 19.25 29.55 0.57 -4.85 16 2 C -0.12 -2.66 11.17 -37.12 -0.41 -3.08 16 3 C 0.23 5.14 4.78 -6.83 -0.03 5.11 16 4 N -0.42 -11.03 2.59 -121.14 -0.31 -11.34 16 5 C -0.30 -8.42 9.31 -15.04 -0.14 -8.56 16 6 H 0.11 3.14 7.38 -52.49 -0.39 2.75 16 7 C 0.03 0.76 4.87 -17.44 -0.08 0.68 16 8 N -0.85 -22.15 9.47 55.50 0.53 -21.62 16 9 Si 0.92 20.25 29.60 -169.99 -5.03 15.21 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 11.97 7.34 -14.90 -0.11 11.86 16 14 O -0.59 -17.31 15.75 5.12 0.08 -17.23 16 15 C -0.16 -3.37 8.30 -39.33 -0.33 -3.69 16 16 C -0.07 -1.42 9.17 -37.18 -0.34 -1.76 16 17 C -0.03 -0.54 5.88 -104.95 -0.62 -1.16 16 18 C -0.11 -1.68 9.34 -38.96 -0.36 -2.05 16 19 C 0.09 1.27 6.67 -39.31 -0.26 1.00 16 20 O -0.32 -3.98 10.49 -19.66 -0.21 -4.18 16 21 C 0.03 0.23 9.81 101.05 0.99 1.22 16 22 C -0.18 -2.02 9.03 -39.34 -0.36 -2.37 16 23 C -0.17 -2.02 9.02 -39.50 -0.36 -2.38 16 24 C 0.10 1.51 6.70 -38.65 -0.26 1.25 16 25 O -0.31 -4.40 9.67 -19.00 -0.18 -4.59 16 26 C 0.03 0.25 9.81 101.05 0.99 1.25 16 27 H 0.20 3.45 7.80 -54.08 -0.42 3.03 16 28 H 0.07 1.25 6.44 -51.93 -0.33 0.91 16 29 H 0.11 2.56 6.44 -51.93 -0.33 2.22 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.12 2.17 4.09 -52.49 -0.21 1.96 16 32 H 0.14 2.91 7.02 -52.49 -0.37 2.54 16 33 H 0.14 2.16 6.17 -52.48 -0.32 1.84 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 36 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 37 H 0.13 1.08 6.27 -52.49 -0.33 0.75 16 38 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 39 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -33.60 352.50 -5.54 -39.15 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.61 Total: 6.82 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.11 Total: -7.53 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.21 Total: -32.96 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.31 Total: -26.00 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.60 -5.54 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281597315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.895 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds