Wall clock time and date at job start Tue Mar 31 2020 10:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47164 * 166.17583 * 3 2 1 5 5 C 1.36753 * 120.00315 * 96.06620 * 4 3 2 6 6 H 1.08000 * 120.00298 * 162.09898 * 5 4 3 7 7 C 1.39095 * 119.99721 * 342.10764 * 5 4 3 8 8 N 1.31345 * 119.99783 * 338.88638 * 7 5 4 9 9 Si 1.86800 * 120.00201 * 158.88621 * 7 5 4 10 10 H 1.48505 * 109.46974 * 89.99844 * 9 7 5 11 11 H 1.48496 * 109.47325 * 209.99666 * 9 7 5 12 12 H 1.48497 * 109.46990 * 330.00028 * 9 7 5 13 13 C 1.34786 * 120.00337 * 276.07231 * 4 3 2 14 14 O 1.21774 * 120.00261 * 179.97438 * 13 4 3 15 15 C 1.41776 * 119.99494 * 359.97438 * 13 4 3 16 16 C 1.35163 * 120.00055 * 180.02562 * 15 13 4 17 17 C 1.46885 * 120.00203 * 180.02562 * 16 15 13 18 18 C 1.39949 * 120.19157 * 0.02562 * 17 16 15 19 19 C 1.38191 * 119.82695 * 180.02562 * 18 17 16 20 20 O 1.35975 * 119.90135 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00638 * 180.02562 * 20 19 18 22 22 C 1.39006 * 120.20464 * 359.97438 * 19 18 17 23 23 C 1.38114 * 120.39192 * 0.02562 * 22 19 18 24 24 C 1.38573 * 120.16949 * 359.72157 * 23 22 19 25 25 O 1.35764 * 120.10591 * 180.29982 * 24 23 22 26 26 C 1.42899 * 117.00489 * 0.23057 * 25 24 23 27 27 H 4.40640 * 5.51470 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46797 * 46.17940 * 3 2 1 29 29 H 1.09000 * 109.47294 * 286.17797 * 3 2 1 30 30 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.00382 * 0.02562 * 15 13 4 32 32 H 1.08002 * 119.99639 * 0.02562 * 16 15 13 33 33 H 1.08006 * 120.09074 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47350 * 180.02562 * 21 20 19 35 35 H 1.09004 * 109.46250 * 300.00162 * 21 20 19 36 36 H 1.08992 * 109.46873 * 59.99537 * 21 20 19 37 37 H 1.08000 * 119.80601 * 179.97438 * 22 19 18 38 38 H 1.08000 * 119.91651 * 180.02562 * 23 22 19 39 39 H 1.09004 * 109.46781 * 60.00305 * 26 25 24 40 40 H 1.08990 * 109.47611 * 180.02562 * 26 25 24 41 41 H 1.09000 * 109.47144 * 300.00523 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3421 -0.3300 5 6 3.4793 2.2091 0.6694 6 1 4.0976 3.0671 0.4503 7 6 3.0345 1.9860 1.9683 8 7 1.9834 1.2277 2.1814 9 14 3.9320 2.7647 3.4097 10 1 3.3403 4.0954 3.7007 11 1 3.8004 1.8926 4.6043 12 1 5.3686 2.9254 3.0698 13 6 3.2418 1.7218 -1.6188 14 8 3.6468 2.8370 -1.8931 15 6 2.8839 0.8227 -2.6550 16 6 2.9928 1.2032 -3.9474 17 6 2.6215 0.2720 -5.0209 18 6 2.1541 -1.0100 -4.7102 19 6 1.8074 -1.8802 -5.7262 20 8 1.3536 -3.1263 -5.4260 21 6 1.0135 -3.9751 -6.5242 22 6 1.9212 -1.4856 -7.0542 23 6 2.3815 -0.2225 -7.3708 24 6 2.7286 0.6648 -6.3645 25 8 3.1751 1.9082 -6.6771 26 6 3.2578 2.2380 -8.0650 27 1 -1.0502 -0.0003 0.0003 28 1 3.0095 -0.7107 -0.7415 29 1 3.0095 -0.2855 0.9870 30 1 1.6730 1.0723 3.0871 31 1 2.5244 -0.1662 -2.4117 32 1 3.3527 2.1920 -4.1906 33 1 2.0645 -1.3185 -3.6790 34 1 0.6663 -4.9367 -6.1463 35 1 0.2226 -3.5090 -7.1120 36 1 1.8916 -4.1265 -7.1518 37 1 1.6488 -2.1710 -7.8431 38 1 2.4664 0.0763 -8.4052 39 1 2.2688 2.1600 -8.5166 40 1 3.6283 3.2571 -8.1749 41 1 3.9398 1.5483 -8.5624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281597315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:30 Heat of formation + Delta-G solvation = -5.467208 kcal Electronic energy + Delta-G solvation = -25349.244182 eV Core-core repulsion = 21583.565770 eV Total energy + Delta-G solvation = -3765.678412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48878 -40.65910 -39.91332 -37.63728 -37.11723 -34.84900 -33.98783 -33.06408 -31.24916 -30.60896 -28.43347 -28.10056 -27.73230 -26.94974 -24.90463 -23.08739 -22.08873 -19.93733 -19.66972 -19.35182 -18.56310 -18.38809 -17.99148 -17.54540 -16.77502 -16.55481 -16.39416 -16.07217 -15.83297 -15.65284 -15.47933 -14.87305 -14.76450 -14.31966 -14.19296 -14.01194 -13.70363 -13.68154 -13.52347 -12.99927 -12.89195 -12.70967 -12.52575 -12.44820 -12.28315 -12.12813 -11.67003 -11.59895 -11.24588 -11.11797 -11.04476 -10.70653 -10.38958 -9.88304 -9.51105 -8.61888 -8.37969 -5.91883 -0.48705 0.41422 0.98670 1.41432 1.42830 1.55734 2.02551 2.29825 2.32267 2.37783 2.47227 2.47839 2.80645 3.14529 3.23533 3.69104 3.71738 3.86282 4.04666 4.12299 4.17233 4.28267 4.40588 4.44351 4.45289 4.48194 4.52145 4.70138 4.74261 4.75803 4.80953 4.90347 4.96704 5.11992 5.21933 5.38124 5.39067 5.41344 5.44594 5.66946 6.06298 6.36963 6.44271 6.54904 7.10760 7.12994 7.35820 7.98590 8.60102 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003485 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.127557 B = 8031.463007 C = 9457.617398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.352 4.352 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.863 5.863 9 Si 0.989 3.011 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.645 6.645 15 C -0.193 4.193 16 C -0.033 4.033 17 C -0.074 4.074 18 C -0.115 4.115 19 C 0.085 3.915 20 O -0.337 6.337 21 C 0.017 3.983 22 C -0.150 4.150 23 C -0.163 4.163 24 C 0.101 3.899 25 O -0.337 6.337 26 C 0.016 3.984 27 H 0.234 0.766 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.276 0.724 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -11.879 -20.329 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.158 4.158 3 C 0.109 3.891 4 N -0.151 5.151 5 C -0.480 4.480 6 H 0.095 0.905 7 C -0.201 4.201 8 N -0.499 5.499 9 Si 0.812 3.188 10 H -0.204 1.204 11 H -0.188 1.188 12 H -0.194 1.194 13 C 0.251 3.749 14 O -0.536 6.536 15 C -0.213 4.213 16 C -0.055 4.055 17 C -0.075 4.075 18 C -0.134 4.134 19 C 0.041 3.959 20 O -0.251 6.251 21 C -0.077 4.077 22 C -0.169 4.169 23 C -0.181 4.181 24 C 0.055 3.945 25 O -0.251 6.251 26 C -0.078 4.078 27 H 0.251 0.749 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.185 0.815 38 H 0.185 0.815 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.639 -11.381 -19.908 23.083 hybrid contribution 0.034 0.672 0.756 1.012 sum -2.604 -10.709 -19.152 22.097 Atomic orbital electron populations 1.25145 0.96340 1.00538 1.03907 1.23375 0.94913 0.99783 0.97702 1.18382 0.84850 0.83779 1.02080 1.43879 1.53924 1.12491 1.04811 1.19666 1.31052 1.09312 0.87943 0.90491 1.26106 0.95371 0.97912 1.00675 1.70149 1.19427 1.37324 1.22970 0.85019 0.78729 0.78038 0.77011 1.20407 1.18778 1.19401 1.17491 0.85340 0.88097 0.83927 1.90585 1.54749 1.24559 1.83692 1.22058 1.05524 1.00572 0.93168 1.21964 0.94248 0.97982 0.91308 1.18106 1.04868 0.93888 0.90660 1.20515 1.01703 0.91516 0.99690 1.18777 0.98248 0.85699 0.93222 1.86092 1.79987 1.22226 1.36842 1.23365 1.01064 0.94022 0.89267 1.21473 1.02662 0.97699 0.95063 1.21272 1.03533 0.93712 0.99630 1.19211 0.97054 0.85545 0.92670 1.86080 1.80685 1.28711 1.29654 1.23399 1.02910 1.03228 0.78231 0.74917 0.88691 0.88450 0.91350 0.84498 0.86784 0.84824 0.86709 0.91411 0.91281 0.81491 0.81457 0.91014 0.87121 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.10 19.25 74.32 1.43 -8.67 16 2 C -0.16 -7.27 11.17 31.13 0.35 -6.92 16 3 C 0.23 10.86 4.78 84.57 0.40 11.26 16 4 N -0.44 -24.08 2.59 -655.36 -1.70 -25.78 16 5 C -0.35 -20.80 9.31 84.13 0.78 -20.02 16 6 H 0.08 4.88 7.38 -2.91 -0.02 4.86 16 7 C 0.00 0.22 4.87 84.97 0.41 0.63 16 8 N -0.86 -45.78 9.47 21.69 0.21 -45.57 16 9 Si 0.99 42.69 29.60 68.60 2.03 44.72 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.46 25.26 7.34 85.11 0.62 25.89 16 14 O -0.64 -40.63 15.75 -4.59 -0.07 -40.70 16 15 C -0.19 -8.60 8.30 22.44 0.19 -8.42 16 16 C -0.03 -1.37 9.17 23.83 0.22 -1.15 16 17 C -0.07 -2.47 5.88 -20.08 -0.12 -2.59 16 18 C -0.12 -3.49 9.34 22.67 0.21 -3.27 16 19 C 0.09 2.09 6.67 22.44 0.15 2.24 16 20 O -0.34 -7.54 10.49 -93.27 -0.98 -8.52 16 21 C 0.02 0.20 9.81 113.37 1.11 1.31 16 22 C -0.15 -2.76 9.03 22.42 0.20 -2.56 16 23 C -0.16 -3.17 9.02 22.32 0.20 -2.97 16 24 C 0.10 2.81 6.70 22.87 0.15 2.96 16 25 O -0.34 -9.38 9.67 -90.91 -0.88 -10.26 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 H 0.23 7.62 7.80 -4.41 -0.03 7.59 16 28 H 0.10 3.75 6.44 -2.39 -0.02 3.73 16 29 H 0.10 4.73 6.44 -2.39 -0.02 4.72 16 30 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.14 5.39 4.09 -2.91 -0.01 5.37 16 32 H 0.11 5.19 7.02 -2.91 -0.02 5.17 16 33 H 0.13 4.13 6.17 -2.91 -0.02 4.11 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.59 7.65 -2.39 -0.02 0.57 16 36 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 37 H 0.17 1.75 6.27 -2.91 -0.02 1.73 16 38 H 0.17 1.97 6.29 -2.91 -0.02 1.95 16 39 H 0.07 0.84 7.67 -2.38 -0.02 0.82 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 Total: -1.00 -78.94 352.50 7.11 -71.83 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 1.07 Total: 25.19 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 7.44 Total: -10.91 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.49 Total: -71.35 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -1.93 Total: -59.48 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -78.94 7.11 -71.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281597315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.366 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds