Wall clock time and date at job start Tue Mar 31 2020 11:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99629 * 2 1 4 4 N 1.46501 * 109.46958 * 125.00226 * 3 2 1 5 5 C 1.46499 * 120.00114 * 270.00448 * 4 3 2 6 6 C 1.50703 * 109.46589 * 269.99737 * 5 4 3 7 7 H 1.07994 * 120.00227 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99387 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00389 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99553 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47097 * 59.99693 * 10 8 6 12 12 H 1.48499 * 109.47096 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47068 * 299.99727 * 10 8 6 14 14 C 1.34776 * 119.99943 * 89.99930 * 4 3 2 15 15 O 1.21284 * 120.00354 * 180.02562 * 14 4 3 16 16 C 1.50700 * 120.00107 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47365 * 175.58601 * 16 14 4 18 18 C 1.53001 * 115.55077 * 294.60846 * 17 16 14 19 19 S 1.81391 * 109.47269 * 268.98610 * 18 17 16 20 20 C 1.81396 * 101.92367 * 174.78674 * 19 18 17 21 21 O 1.42099 * 108.57982 * 289.27531 * 19 18 17 22 22 O 1.42106 * 108.58104 * 60.30230 * 19 18 17 23 23 C 1.52998 * 117.51850 * 80.31019 * 17 16 14 24 24 C 1.52995 * 60.00158 * 107.48257 * 23 17 16 25 25 H 1.08003 * 119.99758 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00321 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00321 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47103 * 5.00531 * 3 2 1 29 29 H 1.08998 * 109.47198 * 245.00044 * 3 2 1 30 30 H 1.08994 * 109.47197 * 29.99397 * 5 4 3 31 31 H 1.09004 * 109.46985 * 149.99664 * 5 4 3 32 32 H 0.97004 * 119.99764 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46992 * 55.58588 * 16 14 4 34 34 H 1.09002 * 109.47442 * 295.58769 * 16 14 4 35 35 H 1.08993 * 109.47329 * 148.98432 * 18 17 16 36 36 H 1.09009 * 109.46859 * 28.98361 * 18 17 16 37 37 H 1.08999 * 109.47507 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.47397 * 299.99790 * 20 19 18 39 39 H 1.08996 * 109.47353 * 60.00038 * 20 19 18 40 40 H 1.09002 * 117.50085 * 214.96836 * 23 17 16 41 41 H 1.08998 * 117.50273 * 359.97438 * 23 17 16 42 42 H 1.09001 * 117.50136 * 252.51434 * 24 23 17 43 43 H 1.08998 * 117.50270 * 107.48584 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8648 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3039 3.8369 1.6369 8 6 2.5193 4.0663 3.6088 9 7 1.9599 3.4654 4.6362 10 14 2.8736 5.8991 3.6780 11 1 2.1378 6.5871 2.5869 12 1 2.4327 6.4394 4.9891 13 1 4.3315 6.1280 3.5128 14 6 4.2497 0.8663 0.9823 15 8 5.0197 0.8880 1.9191 16 6 4.6972 0.3185 -0.3484 17 6 6.1836 -0.0376 -0.2795 18 6 7.1364 1.1428 -0.0803 19 16 7.6598 1.7769 -1.6971 20 6 8.6298 3.2372 -1.2309 21 8 8.5309 0.8271 -2.2956 22 8 6.5079 2.2072 -2.4093 23 6 6.5621 -1.3688 0.3727 24 6 6.6720 -1.2016 -1.1441 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 1.4888 1.6965 2.5460 31 1 3.0990 1.3601 3.2259 32 1 1.7317 3.9739 5.4301 33 1 4.5391 1.0697 -1.1222 34 1 4.1202 -0.5751 -0.5862 35 1 8.0107 0.8133 0.4811 36 1 6.6264 1.9323 0.4718 37 1 9.0115 3.7220 -2.1294 38 1 7.9961 3.9345 -0.6828 39 1 9.4649 2.9325 -0.6003 40 1 7.4899 -1.4038 0.9437 41 1 5.7522 -1.9911 0.7533 42 1 5.9343 -1.7138 -1.7617 43 1 7.6721 -1.1263 -1.5710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292458325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:41 Heat of formation + Delta-G solvation = -80.968536 kcal Electronic energy + Delta-G solvation = -25299.986861 eV Core-core repulsion = 21666.478417 eV Total energy + Delta-G solvation = -3633.508444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01247 -38.84005 -37.94387 -37.07870 -36.94149 -35.11115 -33.63550 -31.26436 -30.73055 -29.70706 -28.71000 -26.83693 -24.78566 -23.40032 -21.43048 -20.75232 -19.91505 -19.50184 -18.61120 -17.83197 -17.47136 -17.35139 -17.06402 -16.86210 -16.32645 -16.24828 -15.86384 -15.42561 -15.12025 -14.40033 -14.34295 -14.13240 -14.00737 -13.98019 -13.62106 -13.42103 -13.30227 -13.00719 -12.97326 -12.95665 -12.86604 -12.65668 -12.52864 -12.33044 -12.21280 -12.19101 -12.15251 -11.79621 -11.67047 -11.36334 -10.71176 -10.63301 -10.31879 -10.26468 -9.41495 -8.20844 -6.35704 -0.91390 1.33749 1.37343 1.40134 1.47973 1.85268 1.88835 2.32476 2.43745 2.68184 2.86794 3.08627 3.10689 3.50427 3.59462 3.75303 3.81226 4.03710 4.06774 4.11692 4.18487 4.27572 4.40992 4.43745 4.56484 4.67716 4.79290 4.80902 4.89672 4.92330 5.03984 5.05313 5.09407 5.12499 5.24154 5.25756 5.54506 5.71153 5.78020 5.97649 6.08595 6.71783 6.82262 7.30090 7.52658 8.85900 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.004859 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.501117 B = 5760.746190 C = 7110.431559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.183 4.183 3 C 0.129 3.871 4 N -0.602 5.602 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.500 3.500 15 O -0.576 6.576 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.567 4.567 19 S 2.426 3.574 20 C -0.651 4.651 21 O -0.965 6.965 22 O -0.974 6.974 23 C -0.147 4.147 24 C -0.177 4.177 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.016 0.984 31 H -0.001 1.001 32 H 0.266 0.734 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -5.936 -14.269 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.202 4.202 3 C 0.007 3.993 4 N -0.332 5.332 5 C 0.144 3.856 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.198 1.198 14 C 0.289 3.711 15 O -0.456 6.456 16 C -0.146 4.146 17 C -0.124 4.124 18 C -0.695 4.695 19 S 2.613 3.387 20 C -0.803 4.803 21 O -0.962 6.962 22 O -0.972 6.972 23 C -0.185 4.185 24 C -0.214 4.214 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.034 0.966 31 H 0.017 0.983 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.172 0.828 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.922 -6.201 -14.459 18.086 hybrid contribution -0.062 1.320 1.581 2.061 sum 8.860 -4.881 -12.878 16.376 Atomic orbital electron populations 1.24042 0.95572 1.02820 0.98485 1.23339 0.96795 0.98298 1.01740 1.20840 0.92856 0.96365 0.89282 1.48232 1.11944 1.60146 1.12894 1.18659 0.93648 0.92720 0.80525 1.21694 1.40590 0.94451 1.01315 0.92671 1.25837 0.94691 1.03592 0.94883 1.70052 1.42849 1.38156 1.05768 0.85526 0.78734 0.79173 0.77764 1.18710 1.20524 1.19837 1.21100 0.81382 0.77701 0.90908 1.90618 1.53485 1.57804 1.43705 1.21444 0.94574 1.04032 0.94551 1.20514 0.92969 0.89479 1.09448 1.29892 1.09376 1.07883 1.22379 1.07539 0.75768 0.77796 0.77621 1.30198 1.16235 1.19561 1.14273 1.93518 1.67118 1.60907 1.74634 1.93528 1.50511 1.82747 1.70388 1.23035 1.03502 0.96716 0.95252 1.23715 1.04669 0.98736 0.94236 0.86477 0.88483 0.86555 0.90647 0.87878 0.96587 0.98309 0.92489 0.87111 0.86118 0.82813 0.85571 0.83709 0.84355 0.82840 0.87762 0.88628 0.86029 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 14.32 67.78 0.97 -3.23 16 2 C -0.18 -4.99 9.85 25.64 0.25 -4.73 16 3 C 0.13 4.18 5.67 85.63 0.49 4.67 16 4 N -0.60 -25.46 2.44 -830.51 -2.03 -27.48 16 5 C 0.27 14.30 5.16 85.63 0.44 14.74 16 6 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 7 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.51 5.46 84.66 0.46 0.97 16 9 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 10 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 14 C 0.50 20.12 7.25 87.66 0.64 20.76 16 15 O -0.58 -27.67 14.47 -3.04 -0.04 -27.72 16 16 C -0.11 -3.07 4.25 29.85 0.13 -2.95 16 17 C -0.12 -3.21 1.09 -52.18 -0.06 -3.27 16 18 C -0.57 -13.49 5.46 71.98 0.39 -13.09 16 19 S 2.43 50.87 5.06 -56.49 -0.29 50.59 16 20 C -0.65 -8.72 10.62 113.37 1.20 -7.51 16 21 O -0.96 -23.58 16.15 -127.37 -2.06 -25.64 16 22 O -0.97 -27.58 17.63 -127.37 -2.25 -29.83 16 23 C -0.15 -3.51 9.81 30.59 0.30 -3.21 16 24 C -0.18 -3.71 9.32 30.59 0.29 -3.42 16 25 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 26 H 0.10 2.41 7.84 -2.91 -0.02 2.38 16 27 H 0.12 2.86 7.95 -2.91 -0.02 2.84 16 28 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 29 H 0.10 2.78 6.32 -2.39 -0.02 2.76 16 30 H 0.02 0.89 8.07 -2.39 -0.02 0.88 16 31 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.11 3.05 6.71 -2.39 -0.02 3.03 16 34 H 0.12 2.80 7.98 -2.39 -0.02 2.78 16 35 H 0.15 2.84 7.87 -2.39 -0.02 2.82 16 36 H 0.13 3.53 6.84 -2.39 -0.02 3.52 16 37 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 2.30 8.03 -2.39 -0.02 2.28 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.12 2.49 6.36 -2.39 -0.02 2.48 16 Total: -1.00 -79.96 371.57 2.38 -77.58 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.99 Total: 22.85 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.74 Total: -30.90 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.74 Total: -83.09 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -4.35 Total: -83.19 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.29 Total: 50.59 kcal Total: -79.96 2.38 -77.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292458325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.390 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds