Wall clock time and date at job start Tue Mar 31 2020 11:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00396 * 2 1 4 4 C 1.53006 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47113 * 65.00207 * 4 3 2 6 6 C 1.36911 * 120.00004 * 270.00106 * 5 4 3 7 7 H 1.07997 * 120.00227 * 141.27146 * 6 5 4 8 8 C 1.39012 * 119.99652 * 321.26581 * 6 5 4 9 9 N 1.31396 * 119.99592 * 158.92497 * 8 6 5 10 10 Si 1.86797 * 120.00319 * 338.92714 * 8 6 5 11 11 H 1.48504 * 109.47271 * 95.30900 * 10 8 6 12 12 H 1.48503 * 109.47177 * 215.31030 * 10 8 6 13 13 H 1.48502 * 109.47136 * 335.31085 * 10 8 6 14 14 C 1.34776 * 120.00049 * 90.00038 * 5 4 3 15 15 O 1.21653 * 120.00317 * 3.79825 * 14 5 4 16 16 C 1.47217 * 119.99843 * 183.80611 * 14 5 4 17 17 C 1.40799 * 119.82003 * 321.82542 * 16 14 5 18 18 C 1.35561 * 120.91935 * 180.26594 * 17 16 14 19 19 C 1.40894 * 120.23001 * 359.45422 * 18 17 16 20 20 C 1.40423 * 120.99006 * 180.25523 * 19 18 17 21 21 C 1.36203 * 119.72981 * 179.97438 * 20 19 18 22 22 C 1.39280 * 120.97790 * 0.04295 * 21 20 19 23 23 C 1.36203 * 120.90284 * 359.95783 * 22 21 20 24 24 C 1.40431 * 119.67566 * 0.02562 * 23 22 21 25 25 C 1.39369 * 119.82344 * 141.54605 * 16 14 5 26 26 O 1.35451 * 120.36195 * 0.03671 * 25 16 14 27 27 H 1.09002 * 109.47152 * 59.99598 * 1 2 3 28 28 H 1.08997 * 109.47776 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46907 * 299.99971 * 1 2 3 30 30 H 1.09002 * 109.46611 * 60.00528 * 3 2 1 31 31 H 1.08993 * 109.46965 * 300.00200 * 3 2 1 32 32 H 1.08997 * 109.47248 * 304.99928 * 4 3 2 33 33 H 1.09000 * 109.47018 * 185.00232 * 4 3 2 34 34 H 0.97002 * 119.99640 * 185.01388 * 9 8 6 35 35 H 1.07998 * 119.53902 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.88636 * 179.73148 * 18 17 16 37 37 H 1.07999 * 120.13164 * 0.04458 * 20 19 18 38 38 H 1.08000 * 119.51402 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.54907 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.16108 * 180.02562 * 23 22 21 41 41 H 0.96701 * 114.00419 * 269.98272 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0966 -0.7969 -1.3369 7 1 3.8037 -1.3102 -2.2408 8 6 4.5965 -1.5182 -0.2589 9 7 4.3413 -2.8028 -0.1529 10 14 5.6311 -0.6614 1.0391 11 1 4.7646 -0.2570 2.1754 12 1 6.6837 -1.5893 1.5251 13 1 6.2675 0.5436 0.4488 14 6 4.2615 1.3336 -2.3218 15 8 4.2210 2.5458 -2.2272 16 6 4.6227 0.7070 -3.6040 17 6 5.4231 -0.4513 -3.6164 18 6 5.7734 -1.0434 -4.7845 19 6 5.3291 -0.5110 -6.0109 20 6 5.6780 -1.1144 -7.2299 21 6 5.2337 -0.5783 -8.4006 22 6 4.4366 0.5637 -8.4091 23 6 4.0785 1.1756 -7.2461 24 6 4.5181 0.6503 -6.0202 25 6 4.1658 1.2602 -4.7988 26 8 3.3917 2.3717 -4.7868 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8462 0.8901 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5680 0.8409 33 1 3.9786 2.1763 0.0890 34 1 4.6277 -3.2907 0.6350 35 1 5.7665 -0.8712 -2.6826 36 1 6.3916 -1.9290 -4.7747 37 1 6.2951 -2.0007 -7.2391 38 1 5.5038 -1.0456 -9.3361 39 1 4.0975 0.9696 -9.3508 40 1 3.4596 2.0605 -7.2667 41 1 2.4431 2.1900 -4.7404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316973854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:15 Heat of formation + Delta-G solvation = -52.190329 kcal Electronic energy + Delta-G solvation = -26732.685547 eV Core-core repulsion = 22964.981068 eV Total energy + Delta-G solvation = -3767.704479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34848 -38.87991 -37.37291 -36.84784 -35.41973 -34.77299 -32.03790 -31.53699 -30.60633 -29.04584 -28.31118 -25.90230 -25.01269 -23.77690 -22.76746 -22.19290 -21.41011 -19.42359 -18.08337 -17.82421 -17.04581 -16.37058 -16.03772 -15.74189 -15.40345 -15.15646 -14.69008 -14.51639 -14.41519 -14.08301 -13.73821 -13.54077 -13.44811 -13.02007 -12.89014 -12.52148 -12.36320 -12.00592 -11.80547 -11.68944 -11.40276 -11.33743 -10.95082 -10.86960 -10.77994 -10.69606 -10.17957 -10.01454 -9.96101 -9.46259 -9.22229 -9.10500 -8.62305 -8.19602 -7.84946 -7.37693 -6.44917 -4.02087 0.75925 1.28112 2.24469 3.02306 3.13054 3.21845 3.26410 3.86382 4.08997 4.19843 4.34524 4.42908 4.61978 4.92481 5.01359 5.05571 5.20848 5.42855 5.53693 5.58330 5.61626 5.66048 5.71184 5.76618 5.81952 5.90804 5.95908 6.00951 6.03426 6.20032 6.22962 6.36441 6.42662 6.48314 6.60918 6.69302 6.92556 7.03940 7.09072 7.27130 7.33902 7.76960 8.04022 8.05896 8.23670 8.92004 9.29853 9.61545 10.61983 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004948 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.815925 B = 5657.866096 C = 6421.258642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.100 3.900 5 N -0.447 5.447 6 C -0.333 4.333 7 H 0.107 0.893 8 C 0.074 3.926 9 N -0.850 5.850 10 Si 0.869 3.131 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.513 3.487 15 O -0.581 6.581 16 C -0.110 4.110 17 C -0.041 4.041 18 C -0.145 4.145 19 C -0.027 4.027 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.136 4.136 23 C -0.090 4.090 24 C -0.085 4.085 25 C 0.145 3.855 26 O -0.475 6.475 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.275 0.725 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 2.558 -8.221 8.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.166 5.166 6 C -0.460 4.460 7 H 0.125 0.875 8 C -0.134 4.134 9 N -0.484 5.484 10 Si 0.697 3.303 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.303 3.697 15 O -0.466 6.466 16 C -0.113 4.113 17 C -0.060 4.060 18 C -0.163 4.163 19 C -0.027 4.027 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.085 4.085 25 C 0.098 3.902 26 O -0.284 6.284 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.668 3.072 -8.079 8.803 hybrid contribution -0.371 0.122 0.890 0.971 sum -2.039 3.194 -7.190 8.127 Atomic orbital electron populations 1.22654 0.83051 1.02105 0.98681 1.88234 1.17637 1.26474 1.94992 1.22852 0.94824 0.85287 0.99247 1.21745 0.92317 0.99163 0.89057 1.43535 1.56941 1.07065 1.09082 1.18983 1.42930 0.79207 1.04848 0.87539 1.25250 0.95927 0.94961 0.97310 1.69688 1.41906 1.08353 1.28445 0.87047 0.80868 0.80360 0.82059 1.19970 1.21311 1.18432 1.18018 0.80800 0.86146 0.84725 1.90686 1.57195 1.13664 1.85043 1.20329 1.01545 0.96238 0.93202 1.21567 0.92929 0.91589 0.99868 1.20917 1.02742 1.01514 0.91108 1.18075 0.96495 0.93965 0.94159 1.20996 1.00490 0.99880 0.91612 1.20786 0.98415 0.96533 0.97918 1.20724 1.00008 0.96795 0.97864 1.20917 0.99194 0.99253 0.91419 1.18234 1.01043 0.96103 0.93165 1.18440 0.95070 0.86503 0.90175 1.84729 1.20396 1.27419 1.95826 0.94980 0.90071 0.95198 0.93836 0.93461 0.90677 0.89528 0.91415 0.82255 0.85477 0.85686 0.86452 0.86449 0.85613 0.76139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.44 10.18 -35.23 -0.36 -7.80 16 3 C 0.06 1.08 6.28 37.16 0.23 1.32 16 4 C 0.10 2.19 4.66 -4.04 -0.02 2.17 16 5 N -0.45 -10.58 2.13 -116.11 -0.25 -10.83 16 6 C -0.33 -8.30 6.25 -15.00 -0.09 -8.39 16 7 H 0.11 2.83 6.51 -52.49 -0.34 2.49 16 8 C 0.07 1.88 5.32 -17.45 -0.09 1.79 16 9 N -0.85 -22.58 13.95 55.50 0.77 -21.81 16 10 Si 0.87 19.85 25.02 -169.99 -4.25 15.59 16 11 H -0.27 -6.07 6.69 56.52 0.38 -5.69 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.51 12.17 7.14 -12.61 -0.09 12.08 16 15 O -0.58 -14.79 15.59 -11.96 -0.19 -14.98 16 16 C -0.11 -2.36 5.37 -104.86 -0.56 -2.92 16 17 C -0.04 -0.84 7.61 -39.57 -0.30 -1.14 16 18 C -0.14 -2.51 9.72 -39.53 -0.38 -2.89 16 19 C -0.03 -0.44 5.75 -106.77 -0.61 -1.06 16 20 C -0.11 -1.53 9.75 -39.49 -0.39 -1.91 16 21 C -0.12 -1.45 9.95 -39.93 -0.40 -1.84 16 22 C -0.14 -1.70 9.95 -39.93 -0.40 -2.10 16 23 C -0.09 -1.31 9.56 -39.49 -0.38 -1.69 16 24 C -0.08 -1.47 5.75 -106.73 -0.61 -2.09 16 25 C 0.15 2.81 6.69 -38.12 -0.26 2.56 16 26 O -0.47 -8.64 11.39 -35.23 -0.40 -9.04 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.69 3.33 -51.93 -0.17 1.52 16 33 H 0.09 1.82 7.37 -51.93 -0.38 1.43 16 34 H 0.28 6.89 8.32 -40.82 -0.34 6.56 16 35 H 0.16 3.43 5.94 -52.49 -0.31 3.12 16 36 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.13 1.64 7.61 -52.48 -0.40 1.25 16 41 H 0.38 5.33 9.06 45.56 0.41 5.75 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -31.19 341.00 -6.93 -38.12 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.16 Total: 10.11 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.24 Total: -4.50 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.53 Total: -32.63 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.95 Total: -31.82 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.25 Total: 15.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.19 -6.93 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316973854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.072 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds