Wall clock time and date at job start Tue Mar 31 2020 11:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00396 * 2 1 4 4 C 1.53006 * 109.47090 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47113 * 65.00207 * 4 3 2 6 6 C 1.36911 * 120.00004 * 270.00106 * 5 4 3 7 7 H 1.07997 * 120.00227 * 141.27146 * 6 5 4 8 8 C 1.39012 * 119.99652 * 321.26581 * 6 5 4 9 9 N 1.31396 * 119.99592 * 158.92497 * 8 6 5 10 10 Si 1.86797 * 120.00319 * 338.92714 * 8 6 5 11 11 H 1.48504 * 109.47271 * 95.30900 * 10 8 6 12 12 H 1.48503 * 109.47177 * 215.31030 * 10 8 6 13 13 H 1.48502 * 109.47136 * 335.31085 * 10 8 6 14 14 C 1.34776 * 120.00049 * 90.00038 * 5 4 3 15 15 O 1.21653 * 120.00317 * 3.79825 * 14 5 4 16 16 C 1.47217 * 119.99843 * 183.80611 * 14 5 4 17 17 C 1.40799 * 119.82003 * 321.82542 * 16 14 5 18 18 C 1.35561 * 120.91935 * 180.26594 * 17 16 14 19 19 C 1.40894 * 120.23001 * 359.45422 * 18 17 16 20 20 C 1.40423 * 120.99006 * 180.25523 * 19 18 17 21 21 C 1.36203 * 119.72981 * 179.97438 * 20 19 18 22 22 C 1.39280 * 120.97790 * 0.04295 * 21 20 19 23 23 C 1.36203 * 120.90284 * 359.95783 * 22 21 20 24 24 C 1.40431 * 119.67566 * 0.02562 * 23 22 21 25 25 C 1.39369 * 119.82344 * 141.54605 * 16 14 5 26 26 O 1.35451 * 120.36195 * 0.03671 * 25 16 14 27 27 H 1.09002 * 109.47152 * 59.99598 * 1 2 3 28 28 H 1.08997 * 109.47776 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46907 * 299.99971 * 1 2 3 30 30 H 1.09002 * 109.46611 * 60.00528 * 3 2 1 31 31 H 1.08993 * 109.46965 * 300.00200 * 3 2 1 32 32 H 1.08997 * 109.47248 * 304.99928 * 4 3 2 33 33 H 1.09000 * 109.47018 * 185.00232 * 4 3 2 34 34 H 0.97002 * 119.99640 * 185.01388 * 9 8 6 35 35 H 1.07998 * 119.53902 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.88636 * 179.73148 * 18 17 16 37 37 H 1.07999 * 120.13164 * 0.04458 * 20 19 18 38 38 H 1.08000 * 119.51402 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.54907 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.16108 * 180.02562 * 23 22 21 41 41 H 0.96701 * 114.00419 * 269.98272 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0966 -0.7969 -1.3369 7 1 3.8037 -1.3102 -2.2408 8 6 4.5965 -1.5182 -0.2589 9 7 4.3413 -2.8028 -0.1529 10 14 5.6311 -0.6614 1.0391 11 1 4.7646 -0.2570 2.1754 12 1 6.6837 -1.5893 1.5251 13 1 6.2675 0.5436 0.4488 14 6 4.2615 1.3336 -2.3218 15 8 4.2210 2.5458 -2.2272 16 6 4.6227 0.7070 -3.6040 17 6 5.4231 -0.4513 -3.6164 18 6 5.7734 -1.0434 -4.7845 19 6 5.3291 -0.5110 -6.0109 20 6 5.6780 -1.1144 -7.2299 21 6 5.2337 -0.5783 -8.4006 22 6 4.4366 0.5637 -8.4091 23 6 4.0785 1.1756 -7.2461 24 6 4.5181 0.6503 -6.0202 25 6 4.1658 1.2602 -4.7988 26 8 3.3917 2.3717 -4.7868 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8462 0.8901 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5680 0.8409 33 1 3.9786 2.1763 0.0890 34 1 4.6277 -3.2907 0.6350 35 1 5.7665 -0.8712 -2.6826 36 1 6.3916 -1.9290 -4.7747 37 1 6.2951 -2.0007 -7.2391 38 1 5.5038 -1.0456 -9.3361 39 1 4.0975 0.9696 -9.3508 40 1 3.4596 2.0605 -7.2667 41 1 2.4431 2.1900 -4.7404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316973854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:14 Heat of formation + Delta-G solvation = -72.498386 kcal Electronic energy + Delta-G solvation = -26733.566170 eV Core-core repulsion = 22964.981068 eV Total energy + Delta-G solvation = -3768.585102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76583 -40.48666 -38.79781 -38.33310 -36.88191 -36.50472 -33.95171 -32.75412 -32.02692 -30.50785 -29.65988 -27.28930 -26.84779 -25.22798 -24.05285 -23.67726 -22.70386 -21.15538 -19.52457 -19.43488 -18.55992 -17.93373 -17.41490 -17.28207 -16.88142 -16.70495 -16.27575 -16.03121 -15.80990 -15.47325 -15.31136 -15.08488 -14.68485 -14.52457 -14.37738 -14.10338 -13.80382 -13.62757 -13.29290 -13.14002 -13.01926 -12.66363 -12.59068 -12.42911 -12.10166 -11.93857 -11.81202 -11.70714 -11.51662 -11.08904 -10.68500 -10.60559 -10.41317 -9.73583 -9.51530 -8.67073 -8.39791 -5.98736 -0.52536 0.00425 0.98569 1.19445 1.31574 1.40853 1.72293 2.19451 2.28236 2.51575 2.89458 3.03808 3.14299 3.28027 3.79698 3.96108 3.99960 4.08346 4.12119 4.17721 4.30066 4.35997 4.44486 4.46885 4.51002 4.53560 4.56886 4.68550 4.74110 4.78490 4.83546 4.99890 5.15397 5.25962 5.36658 5.43980 5.50763 5.62154 5.70273 5.84849 6.08424 6.11215 6.27301 6.38253 6.74028 6.99746 7.40156 7.74332 8.70527 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.004948 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.815925 B = 5657.866096 C = 6421.258642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.062 3.938 4 C 0.091 3.909 5 N -0.455 5.455 6 C -0.316 4.316 7 H 0.082 0.918 8 C 0.042 3.958 9 N -0.888 5.888 10 Si 0.914 3.086 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.512 3.488 15 O -0.606 6.606 16 C -0.153 4.153 17 C -0.066 4.066 18 C -0.135 4.135 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.105 4.105 24 C -0.102 4.102 25 C 0.149 3.851 26 O -0.485 6.485 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.278 0.722 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 2.737 -10.874 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.032 4.032 5 N -0.174 5.174 6 C -0.444 4.444 7 H 0.099 0.901 8 C -0.163 4.163 9 N -0.524 5.524 10 Si 0.741 3.259 11 H -0.187 1.187 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.303 3.697 15 O -0.493 6.493 16 C -0.156 4.156 17 C -0.084 4.084 18 C -0.153 4.153 19 C -0.040 4.040 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.123 4.123 24 C -0.103 4.103 25 C 0.102 3.898 26 O -0.296 6.296 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.154 0.846 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.900 3.252 -10.725 11.367 hybrid contribution -0.352 0.111 1.380 1.428 sum -2.252 3.363 -9.346 10.184 Atomic orbital electron populations 1.22854 0.80531 1.03089 1.00410 1.88165 1.20549 1.27366 1.95330 1.22774 0.92963 0.85183 1.00610 1.21889 0.94476 0.98866 0.87944 1.43604 1.57355 1.06597 1.09852 1.18671 1.42162 0.79650 1.03914 0.90088 1.25636 0.96563 0.95300 0.98842 1.69744 1.43851 1.09402 1.29451 0.86326 0.79821 0.79080 0.80673 1.18659 1.20892 1.19542 1.18434 0.79780 0.85915 0.85536 1.90634 1.58351 1.14581 1.85686 1.20310 1.04391 0.98024 0.92895 1.21283 0.94827 0.92330 1.00009 1.21156 1.01973 1.01480 0.90687 1.18358 0.96459 0.94134 0.95069 1.21327 1.00841 1.00728 0.90744 1.21320 0.96279 0.95631 0.98979 1.21230 0.98111 0.96006 0.98482 1.21119 0.99974 1.00155 0.91063 1.18451 1.01803 0.96674 0.93373 1.18625 0.94605 0.86106 0.90448 1.84653 1.21677 1.27457 1.95844 0.94004 0.89565 0.92580 0.90371 0.93948 0.91407 0.89196 0.91207 0.84810 0.83233 0.83062 0.82370 0.82747 0.84561 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.62 10.18 -148.98 -1.52 -18.13 16 3 C 0.06 2.40 6.28 71.98 0.45 2.86 16 4 C 0.09 4.04 4.66 86.38 0.40 4.45 16 5 N -0.45 -22.44 2.13 -639.48 -1.36 -23.81 16 6 C -0.32 -16.58 6.25 84.09 0.53 -16.05 16 7 H 0.08 4.62 6.51 -2.91 -0.02 4.60 16 8 C 0.04 2.19 5.32 84.94 0.45 2.64 16 9 N -0.89 -48.87 13.95 21.68 0.30 -48.57 16 10 Si 0.91 42.03 25.02 68.60 1.72 43.75 16 11 H -0.26 -11.35 6.69 99.48 0.67 -10.69 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.51 25.45 7.14 86.60 0.62 26.07 16 15 O -0.61 -31.97 15.59 12.24 0.19 -31.78 16 16 C -0.15 -6.91 5.37 -20.02 -0.11 -7.01 16 17 C -0.07 -2.82 7.61 22.28 0.17 -2.65 16 18 C -0.14 -4.73 9.72 22.30 0.22 -4.51 16 19 C -0.04 -1.28 5.75 -21.26 -0.12 -1.40 16 20 C -0.12 -2.81 9.75 22.33 0.22 -2.59 16 21 C -0.10 -2.00 9.95 22.05 0.22 -1.78 16 22 C -0.12 -2.44 9.95 22.05 0.22 -2.22 16 23 C -0.11 -2.79 9.56 22.33 0.21 -2.58 16 24 C -0.10 -3.47 5.75 -21.23 -0.12 -3.59 16 25 C 0.15 5.90 6.69 23.22 0.16 6.06 16 26 O -0.48 -17.92 11.39 -71.05 -0.81 -18.73 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 3.09 3.33 -2.39 -0.01 3.08 16 33 H 0.09 3.86 7.37 -2.39 -0.02 3.84 16 34 H 0.28 14.34 8.32 -92.71 -0.77 13.57 16 35 H 0.13 6.25 5.94 -2.91 -0.02 6.23 16 36 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.14 3.25 7.61 -2.91 -0.02 3.23 16 41 H 0.40 11.33 9.06 -74.06 -0.67 10.66 16 Total: -1.00 -70.67 341.00 3.64 -67.03 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.36 Total: 30.47 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.76 Total: -0.23 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.06 Total: -72.38 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -2.13 Total: -68.64 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.72 Total: 43.75 kcal Total: -70.67 3.64 -67.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316973854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.470 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds