Wall clock time and date at job start Tue Mar 31 2020 10:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46729 * 224.32463 * 3 2 1 5 5 C 1.37092 * 119.99537 * 95.59450 * 4 3 2 6 6 H 1.08001 * 119.99887 * 218.35603 * 5 4 3 7 7 C 1.38950 * 120.00473 * 38.63243 * 5 4 3 8 8 N 1.31411 * 120.00157 * 19.73965 * 7 5 4 9 9 Si 1.86799 * 120.00278 * 199.74516 * 7 5 4 10 10 H 1.48508 * 109.46932 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47378 * 119.99404 * 9 7 5 12 12 H 1.48498 * 109.47096 * 239.99667 * 9 7 5 13 13 C 1.34773 * 120.00150 * 275.59215 * 4 3 2 14 14 O 1.21290 * 119.99897 * 354.45278 * 13 4 3 15 15 C 1.50701 * 120.00083 * 174.45775 * 13 4 3 16 16 H 1.09000 * 109.68617 * 323.61729 * 15 13 4 17 17 C 1.53399 * 109.69952 * 84.20772 * 15 13 4 18 18 O 1.42833 * 108.36027 * 184.44591 * 17 15 13 19 19 C 1.35854 * 117.85264 * 310.74727 * 18 17 15 20 20 C 1.39047 * 118.44094 * 197.02664 * 19 18 17 21 21 C 1.38461 * 120.17044 * 180.45496 * 20 19 18 22 22 O 1.35900 * 120.07935 * 179.97438 * 21 20 19 23 23 C 1.42900 * 117.00195 * 180.02562 * 22 21 20 24 24 C 1.38793 * 119.83957 * 359.97438 * 21 20 19 25 25 C 1.38001 * 119.92469 * 359.91445 * 24 21 20 26 26 C 1.38426 * 121.79853 * 17.31362 * 19 18 17 27 27 C 1.50789 * 121.38183 * 359.45796 * 26 19 18 28 28 H 4.40644 * 5.51478 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.46845 * 104.33310 * 3 2 1 30 30 H 1.08997 * 109.47129 * 344.32475 * 3 2 1 31 31 H 0.96995 * 120.00627 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.68835 * 304.15652 * 17 15 13 33 33 H 1.09004 * 109.68088 * 64.70825 * 17 15 13 34 34 H 1.07997 * 119.91610 * 0.43300 * 20 19 18 35 35 H 1.08993 * 109.47485 * 179.97438 * 23 22 21 36 36 H 1.08995 * 109.46977 * 300.00240 * 23 22 21 37 37 H 1.09000 * 109.46842 * 59.99999 * 23 22 21 38 38 H 1.07998 * 120.03609 * 179.89476 * 24 21 20 39 39 H 1.08002 * 119.80091 * 179.97438 * 25 24 21 40 40 H 1.09000 * 109.43548 * 257.75165 * 27 26 19 41 41 H 1.09001 * 109.43576 * 137.89159 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9891 0.9652 5 6 3.4716 0.5983 2.2351 6 1 3.2377 1.2343 3.0760 7 6 4.1201 -0.6135 2.4398 8 7 4.7505 -1.1976 1.4457 9 14 4.0955 -1.4124 4.1282 10 1 3.3244 -0.5596 5.0681 11 1 3.4560 -2.7495 4.0339 12 1 5.4868 -1.5630 4.6248 13 6 3.2507 2.2824 0.6046 14 8 3.0489 2.6121 -0.5451 15 6 3.6322 3.3190 1.6298 16 1 3.1749 3.0732 2.5882 17 6 5.1582 3.3609 1.7797 18 8 5.4824 4.2746 2.8286 19 6 4.9043 5.5037 2.8008 20 6 5.4598 6.5145 3.5775 21 6 4.8940 7.7782 3.5835 22 8 5.4381 8.7645 4.3437 23 6 4.8010 10.0429 4.3009 24 6 3.7698 8.0351 2.8112 25 6 3.2210 7.0316 2.0390 26 6 3.7849 5.7661 2.0299 27 6 3.1561 4.6990 1.1699 28 1 -1.0501 -0.0003 0.0000 29 1 3.0092 0.2552 -0.9956 30 1 3.0099 -0.9886 0.2776 31 1 5.2029 -2.0436 1.5885 32 1 5.5300 2.3674 2.0305 33 1 5.6097 3.6975 0.8464 34 1 6.3346 6.3132 4.1780 35 1 5.3339 10.7365 4.9512 36 1 4.8129 10.4207 3.2786 37 1 3.7697 9.9464 4.6405 38 1 3.3248 9.0192 2.8147 39 1 2.3459 7.2336 1.4391 40 1 3.4446 4.8543 0.1303 41 1 2.0710 4.7559 1.2567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369741312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:13 Heat of formation + Delta-G solvation = -24.784440 kcal Electronic energy + Delta-G solvation = -25978.928027 eV Core-core repulsion = 22212.411957 eV Total energy + Delta-G solvation = -3766.516070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71073 -39.43727 -38.45292 -36.33589 -35.27661 -33.55901 -32.50741 -31.41776 -30.36438 -29.92780 -27.51562 -26.64436 -25.20353 -24.94259 -23.17180 -22.51508 -20.29148 -19.08399 -18.43124 -17.90415 -17.16696 -16.50423 -16.23286 -15.89443 -15.81975 -15.23560 -15.03321 -14.66227 -14.52618 -14.17378 -13.98346 -13.57630 -13.36269 -13.06322 -12.79669 -12.68726 -12.41732 -12.26094 -12.13621 -11.85494 -11.62008 -11.28679 -11.16732 -11.01658 -10.93935 -10.49007 -10.40698 -10.29051 -10.13846 -9.81448 -9.50817 -9.10716 -8.61637 -8.34299 -7.81865 -7.77382 -6.55647 -4.26535 1.46399 1.52256 3.00345 3.04895 3.17348 3.21002 3.37394 3.63135 3.64039 3.76978 3.94227 4.04906 4.62411 4.77583 4.80454 4.96601 4.98924 5.03574 5.10605 5.20647 5.27673 5.31026 5.37144 5.43535 5.62062 5.74077 5.95572 6.01248 6.08788 6.16795 6.31090 6.36279 6.44560 6.54964 6.55561 6.63949 6.69793 6.71087 6.93535 7.31017 7.35670 7.70583 7.72228 8.17732 8.37421 8.90484 9.26546 9.70324 10.48478 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003766 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.404081 B = 7433.994027 C = 8492.105083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.155 4.155 3 C 0.210 3.790 4 N -0.432 5.432 5 C -0.347 4.347 6 H 0.093 0.907 7 C 0.049 3.951 8 N -0.858 5.858 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.486 3.514 14 O -0.593 6.593 15 C -0.124 4.124 16 H 0.102 0.898 17 C 0.081 3.919 18 O -0.308 6.308 19 C 0.175 3.825 20 C -0.187 4.187 21 C 0.150 3.850 22 O -0.318 6.318 23 C 0.030 3.970 24 C -0.242 4.242 25 C -0.047 4.047 26 C -0.184 4.184 27 C -0.060 4.060 28 H 0.208 0.792 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.273 0.727 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 13.493 3.795 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.156 4.156 3 C 0.088 3.912 4 N -0.150 5.150 5 C -0.475 4.475 6 H 0.111 0.889 7 C -0.158 4.158 8 N -0.494 5.494 9 Si 0.740 3.260 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.275 3.725 14 O -0.478 6.478 15 C -0.145 4.145 16 H 0.120 0.880 17 C 0.006 3.994 18 O -0.221 6.221 19 C 0.129 3.871 20 C -0.207 4.207 21 C 0.104 3.896 22 O -0.231 6.231 23 C -0.066 4.066 24 C -0.261 4.261 25 C -0.065 4.065 26 C -0.185 4.185 27 C -0.097 4.097 28 H 0.225 0.775 29 H 0.101 0.899 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.622 13.355 3.455 13.809 hybrid contribution -0.689 -0.430 0.657 1.044 sum -1.311 12.926 4.111 13.627 Atomic orbital electron populations 1.24613 0.95645 1.03622 1.03460 1.24374 0.95500 0.97926 0.97838 1.18462 0.81460 0.97277 0.94014 1.43322 1.54999 1.04725 1.11963 1.19486 1.38203 1.06422 0.83358 0.88905 1.25371 0.93623 0.97836 0.98988 1.69902 1.28974 1.17957 1.32577 0.86071 0.78370 0.79386 0.82184 1.18998 1.20386 1.20390 1.20022 0.80489 0.84131 0.87893 1.90545 1.55896 1.81275 1.20116 1.21638 0.97534 0.94390 1.00958 0.88039 1.22962 0.93907 0.93302 0.89192 1.86031 1.65904 1.21129 1.49022 1.18357 0.90347 0.84870 0.93534 1.19562 1.04414 0.89464 1.07219 1.18484 0.92079 0.87986 0.91003 1.86038 1.53972 1.19464 1.63646 1.23019 0.98424 0.82810 1.02313 1.21001 0.99857 1.00839 1.04434 1.20643 0.98299 0.91216 0.96317 1.19906 0.97929 0.96724 1.03927 1.20330 1.00061 0.90305 0.99046 0.77536 0.89935 0.85608 0.91672 0.85164 0.91770 0.84596 0.88457 0.92690 0.92689 0.85667 0.85607 0.89287 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.92 19.25 29.55 0.57 -4.35 16 2 C -0.16 -3.44 13.62 -37.12 -0.51 -3.95 16 3 C 0.21 4.95 5.41 -6.82 -0.04 4.91 16 4 N -0.43 -10.40 2.49 -117.93 -0.29 -10.69 16 5 C -0.35 -8.33 7.93 -14.94 -0.12 -8.45 16 6 H 0.09 2.17 6.51 -52.49 -0.34 1.83 16 7 C 0.05 1.16 4.93 -17.47 -0.09 1.07 16 8 N -0.86 -21.19 11.52 55.50 0.64 -20.55 16 9 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.49 11.26 6.72 -10.99 -0.07 11.19 16 14 O -0.59 -14.95 15.47 5.55 0.09 -14.86 16 15 C -0.12 -2.43 2.03 -91.54 -0.19 -2.62 16 16 H 0.10 2.03 6.61 -51.93 -0.34 1.69 16 17 C 0.08 1.52 6.24 37.36 0.23 1.76 16 18 O -0.31 -5.60 10.27 -19.28 -0.20 -5.79 16 19 C 0.18 2.97 6.47 -39.21 -0.25 2.71 16 20 C -0.19 -2.89 9.87 -39.20 -0.39 -3.28 16 21 C 0.15 2.08 6.68 -39.29 -0.26 1.82 16 22 O -0.32 -3.94 10.50 -19.43 -0.20 -4.15 16 23 C 0.03 0.23 9.81 101.05 0.99 1.22 16 24 C -0.24 -3.05 9.04 -39.46 -0.36 -3.41 16 25 C -0.05 -0.64 9.66 -39.55 -0.38 -1.02 16 26 C -0.18 -2.97 5.75 -104.39 -0.60 -3.57 16 27 C -0.06 -1.05 4.92 -27.81 -0.14 -1.19 16 28 H 0.21 3.03 7.80 -54.08 -0.42 2.61 16 29 H 0.08 1.96 7.52 -51.93 -0.39 1.57 16 30 H 0.13 3.06 5.62 -51.93 -0.29 2.77 16 31 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.13 2.59 7.46 -51.93 -0.39 2.20 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 38 H 0.13 1.22 6.31 -52.49 -0.33 0.89 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.09 1.63 7.43 -51.93 -0.39 1.25 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -28.52 348.94 -6.27 -34.80 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.94 Total: 9.36 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.59 Total: -7.15 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.35 Total: -31.24 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.32 Total: -24.80 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.52 -6.27 -34.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369741312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.011 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds