Wall clock time and date at job start Tue Mar 31 2020 10:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47304 * 2 1 4 4 C 1.42900 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.93476 * 21.83438 * 4 3 2 6 6 C 1.53896 * 113.64236 * 250.49318 * 4 3 2 7 7 C 1.53894 * 87.18935 * 270.46113 * 6 4 3 8 8 H 1.08997 * 113.64643 * 220.53192 * 7 6 4 9 9 N 1.46505 * 113.64631 * 89.53313 * 7 6 4 10 10 C 1.34771 * 119.99892 * 104.50778 * 9 7 6 11 11 O 1.21279 * 120.00363 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99858 * 180.02562 * 10 9 7 13 13 S 1.81005 * 109.47293 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99897 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.38798 * 119.99515 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00300 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46888 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47154 * 120.00156 * 18 16 14 21 21 H 1.48501 * 109.46942 * 239.99876 * 18 16 14 22 22 C 1.53151 * 86.89849 * 335.03151 * 7 6 4 23 23 C 1.53517 * 114.91320 * 141.56170 * 22 7 6 24 24 C 1.54971 * 103.89112 * 131.95186 * 23 22 7 25 25 C 1.55037 * 102.12457 * 20.85544 * 24 23 22 26 26 O 1.43064 * 115.22664 * 268.19093 * 22 7 6 27 27 H 1.09002 * 109.47145 * 299.99845 * 1 2 3 28 28 H 1.08995 * 109.47441 * 60.00111 * 1 2 3 29 29 H 1.09004 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47154 * 239.99607 * 2 1 3 31 31 H 1.09003 * 109.47345 * 120.00244 * 2 1 3 32 32 H 1.09003 * 113.59533 * 25.03741 * 6 4 3 33 33 H 1.08993 * 113.59746 * 155.88391 * 6 4 3 34 34 H 0.97000 * 119.99731 * 284.50380 * 9 7 6 35 35 H 1.08998 * 109.47430 * 300.00279 * 12 10 9 36 36 H 1.09004 * 109.46920 * 59.99775 * 12 10 9 37 37 H 0.96998 * 120.00413 * 180.02562 * 17 16 14 38 38 H 1.09005 * 110.54341 * 250.55763 * 23 22 7 39 39 H 1.09007 * 110.54380 * 13.34955 * 23 22 7 40 40 H 1.09000 * 110.87052 * 139.01491 * 24 23 22 41 41 H 1.08997 * 110.87106 * 262.48256 * 24 23 22 42 42 H 1.08998 * 110.59459 * 81.88888 * 25 24 23 43 43 H 1.09000 * 110.59532 * 204.67542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9277 0.5647 -0.3743 6 6 4.0095 1.9779 1.3281 7 6 3.8550 3.3976 0.7547 8 1 4.6920 4.0563 0.9866 9 7 2.5533 4.0074 1.0379 10 6 2.4476 4.9613 1.9840 11 8 3.4299 5.3147 2.6013 12 6 1.1086 5.5881 2.2757 13 16 1.2931 6.8235 3.5856 14 6 -0.3736 7.3796 3.7187 15 1 -1.1372 6.9536 3.0850 16 6 -0.7049 8.3652 4.6381 17 7 0.2260 8.8848 5.4102 18 14 -2.4719 8.9543 4.7798 19 1 -3.3189 8.2169 3.8082 20 1 -2.9679 8.7051 6.1571 21 1 -2.5337 10.4089 4.4871 22 6 3.9441 2.7568 -0.6335 23 6 3.0156 3.3714 -1.6903 24 6 3.9406 3.5951 -2.9134 25 6 5.1062 2.6147 -2.6237 26 8 5.2608 2.6844 -1.1882 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3691 1.7828 2.1884 33 1 5.0459 1.6856 1.4961 34 1 1.7676 3.7245 0.5443 35 1 0.7279 6.0680 1.3741 36 1 0.4094 4.8172 2.5997 37 1 -0.0056 9.5734 6.0530 38 1 2.2107 2.6803 -1.9407 39 1 2.6107 4.3203 -1.3383 40 1 3.4308 3.3296 -3.8395 41 1 4.2950 4.6252 -2.9490 42 1 4.8420 1.6032 -2.9322 43 1 6.0164 2.9421 -3.1261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375211905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:34 Heat of formation + Delta-G solvation = -100.722199 kcal Electronic energy + Delta-G solvation = -24753.499178 eV Core-core repulsion = 21119.134151 eV Total energy + Delta-G solvation = -3634.365027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28666 -38.78395 -38.05741 -35.87657 -32.88057 -32.40083 -32.28245 -31.05052 -28.99435 -27.94056 -25.49504 -24.55163 -23.45511 -22.92487 -21.71090 -20.47814 -19.41466 -17.97206 -17.07596 -16.91528 -16.36803 -16.17632 -15.87479 -15.70762 -14.95598 -14.77993 -14.76826 -14.09061 -13.84705 -13.77079 -13.59866 -13.15755 -13.00971 -12.79754 -12.57184 -12.31513 -12.09784 -12.01655 -11.86934 -11.52969 -11.39672 -11.19930 -11.04966 -10.98769 -10.80192 -10.74725 -10.71824 -9.95644 -9.75828 -9.58014 -9.34240 -9.04890 -8.78937 -8.19058 -6.46167 -6.18887 -3.88894 2.72031 3.12184 3.17991 3.23479 3.31092 3.36715 3.59148 3.95217 4.19007 4.23156 4.29008 4.46101 4.56267 4.70385 4.76561 4.79516 4.82366 4.96754 5.05546 5.07787 5.16308 5.20854 5.27001 5.36527 5.39265 5.56495 5.58000 5.62463 5.65978 5.76995 5.82649 5.86179 5.86619 5.91807 5.94247 6.01491 6.19496 6.49390 6.76731 7.02575 7.62869 7.83129 8.38461 8.69003 9.26539 10.88588 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003172 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.891735 B = 8825.349625 C = 9506.338564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.056 3.944 5 H 0.077 0.923 6 C -0.168 4.168 7 C 0.145 3.855 8 H 0.109 0.891 9 N -0.710 5.710 10 C 0.535 3.465 11 O -0.516 6.516 12 C -0.151 4.151 13 S -0.060 6.060 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.079 3.921 23 C -0.140 4.140 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.341 6.341 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.404 0.596 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -19.181 -17.941 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.279 6.279 4 C -0.003 4.003 5 H 0.095 0.905 6 C -0.207 4.207 7 C 0.038 3.962 8 H 0.127 0.873 9 N -0.365 5.365 10 C 0.321 3.679 11 O -0.390 6.390 12 C -0.302 4.302 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.038 3.962 23 C -0.177 4.177 24 C -0.193 4.193 25 C -0.031 4.031 26 O -0.259 6.259 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.240 0.760 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.512 -18.293 -16.649 25.577 hybrid contribution -2.616 -0.525 -1.000 2.849 sum 3.897 -18.818 -17.648 26.091 Atomic orbital electron populations 1.21758 0.93431 1.02341 1.03475 1.22530 0.95648 0.83429 1.00048 1.87798 1.18972 1.26699 1.94473 1.23477 0.81970 0.97873 0.97014 0.90480 1.23941 1.02110 0.96781 0.97857 1.21553 0.88242 0.94486 0.91932 0.87344 1.45592 1.09628 1.40599 1.40698 1.20320 0.90906 0.78113 0.78524 1.90701 1.38854 1.61063 1.48390 1.23516 0.96339 1.04124 1.06205 1.85403 1.13555 1.42521 1.41821 1.22916 0.94059 1.25952 1.25330 0.90882 1.24990 0.98447 0.95438 0.94726 1.70029 1.32750 1.26235 1.21288 0.86121 0.82769 0.78531 0.78098 1.19620 1.20598 1.20585 1.23175 0.84010 0.94656 0.94407 1.22700 0.98525 1.02562 0.93953 1.23170 0.96608 1.00802 0.98728 1.23667 0.99426 0.98720 0.81310 1.88782 1.23725 1.94043 1.19334 0.91432 0.91805 0.91112 0.93507 0.93190 0.89860 0.88097 0.76025 0.89247 0.89165 0.92269 0.89420 0.89531 0.90184 0.90240 0.92146 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.15 0.38 -0.70 16 2 C 0.06 0.47 6.51 37.15 0.24 0.71 16 3 O -0.36 -3.60 7.89 -35.23 -0.28 -3.88 16 4 C 0.06 0.56 4.07 -26.19 -0.11 0.46 16 5 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 6 C -0.17 -2.00 7.71 -25.80 -0.20 -2.20 16 7 C 0.15 1.99 4.01 -67.38 -0.27 1.72 16 8 H 0.11 1.74 7.54 -51.93 -0.39 1.35 16 9 N -0.71 -10.50 4.30 -53.28 -0.23 -10.72 16 10 C 0.53 10.42 7.85 -10.99 -0.09 10.34 16 11 O -0.52 -12.10 15.50 5.56 0.09 -12.02 16 12 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 15 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 18 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.08 0.87 1.30 -90.20 -0.12 0.76 16 23 C -0.14 -1.35 5.47 -25.42 -0.14 -1.49 16 24 C -0.16 -1.24 7.16 -24.61 -0.18 -1.41 16 25 C 0.05 0.36 7.73 38.23 0.30 0.66 16 26 O -0.34 -3.86 11.27 -35.23 -0.40 -4.26 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.40 5.18 6.80 -40.82 -0.28 4.91 16 35 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 0.79 7.14 -51.93 -0.37 0.42 16 39 H 0.09 0.94 6.98 -51.92 -0.36 0.57 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -34.26 365.20 -8.42 -42.69 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.85 Total: 2.81 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.24 Total: -7.16 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.50 Total: -36.36 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.59 Total: -20.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.26 -8.42 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375211905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.037 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds