Wall clock time and date at job start Tue Mar 31 2020 10:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47304 * 2 1 4 4 C 1.42900 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.93476 * 21.83438 * 4 3 2 6 6 C 1.53896 * 113.64236 * 250.49318 * 4 3 2 7 7 C 1.53894 * 87.18935 * 270.46113 * 6 4 3 8 8 H 1.08997 * 113.64643 * 220.53192 * 7 6 4 9 9 N 1.46505 * 113.64631 * 89.53313 * 7 6 4 10 10 C 1.34771 * 119.99892 * 104.50778 * 9 7 6 11 11 O 1.21279 * 120.00363 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99858 * 180.02562 * 10 9 7 13 13 S 1.81005 * 109.47293 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99897 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.38798 * 119.99515 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00300 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46888 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47154 * 120.00156 * 18 16 14 21 21 H 1.48501 * 109.46942 * 239.99876 * 18 16 14 22 22 C 1.53151 * 86.89849 * 335.03151 * 7 6 4 23 23 C 1.53517 * 114.91320 * 141.56170 * 22 7 6 24 24 C 1.54971 * 103.89112 * 131.95186 * 23 22 7 25 25 C 1.55037 * 102.12457 * 20.85544 * 24 23 22 26 26 O 1.43064 * 115.22664 * 268.19093 * 22 7 6 27 27 H 1.09002 * 109.47145 * 299.99845 * 1 2 3 28 28 H 1.08995 * 109.47441 * 60.00111 * 1 2 3 29 29 H 1.09004 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47154 * 239.99607 * 2 1 3 31 31 H 1.09003 * 109.47345 * 120.00244 * 2 1 3 32 32 H 1.09003 * 113.59533 * 25.03741 * 6 4 3 33 33 H 1.08993 * 113.59746 * 155.88391 * 6 4 3 34 34 H 0.97000 * 119.99731 * 284.50380 * 9 7 6 35 35 H 1.08998 * 109.47430 * 300.00279 * 12 10 9 36 36 H 1.09004 * 109.46920 * 59.99775 * 12 10 9 37 37 H 0.96998 * 120.00413 * 180.02562 * 17 16 14 38 38 H 1.09005 * 110.54341 * 250.55763 * 23 22 7 39 39 H 1.09007 * 110.54380 * 13.34955 * 23 22 7 40 40 H 1.09000 * 110.87052 * 139.01491 * 24 23 22 41 41 H 1.08997 * 110.87106 * 262.48256 * 24 23 22 42 42 H 1.08998 * 110.59459 * 81.88888 * 25 24 23 43 43 H 1.09000 * 110.59532 * 204.67542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9277 0.5647 -0.3743 6 6 4.0095 1.9779 1.3281 7 6 3.8550 3.3976 0.7547 8 1 4.6920 4.0563 0.9866 9 7 2.5533 4.0074 1.0379 10 6 2.4476 4.9613 1.9840 11 8 3.4299 5.3147 2.6013 12 6 1.1086 5.5881 2.2757 13 16 1.2931 6.8235 3.5856 14 6 -0.3736 7.3796 3.7187 15 1 -1.1372 6.9536 3.0850 16 6 -0.7049 8.3652 4.6381 17 7 0.2260 8.8848 5.4102 18 14 -2.4719 8.9543 4.7798 19 1 -3.3189 8.2169 3.8082 20 1 -2.9679 8.7051 6.1571 21 1 -2.5337 10.4089 4.4871 22 6 3.9441 2.7568 -0.6335 23 6 3.0156 3.3714 -1.6903 24 6 3.9406 3.5951 -2.9134 25 6 5.1062 2.6147 -2.6237 26 8 5.2608 2.6844 -1.1882 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3691 1.7828 2.1884 33 1 5.0459 1.6856 1.4961 34 1 1.7676 3.7245 0.5443 35 1 0.7279 6.0680 1.3741 36 1 0.4094 4.8172 2.5997 37 1 -0.0056 9.5734 6.0530 38 1 2.2107 2.6803 -1.9407 39 1 2.6107 4.3203 -1.3383 40 1 3.4308 3.3296 -3.8395 41 1 4.2950 4.6252 -2.9490 42 1 4.8420 1.6032 -2.9322 43 1 6.0164 2.9421 -3.1261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375211905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:33 Heat of formation + Delta-G solvation = -124.462206 kcal Electronic energy + Delta-G solvation = -24754.528622 eV Core-core repulsion = 21119.134151 eV Total energy + Delta-G solvation = -3635.394471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22587 -40.22699 -38.82743 -36.87984 -34.58546 -34.11826 -33.08303 -31.75905 -30.56756 -28.69509 -27.68465 -25.57948 -24.25515 -23.56578 -22.51630 -21.78596 -20.47951 -19.87911 -18.30238 -17.80219 -17.47108 -17.15574 -16.88188 -16.72466 -16.55429 -16.31116 -16.11763 -15.66292 -14.84699 -14.68887 -14.52840 -14.43173 -14.29833 -14.06271 -13.50371 -13.40233 -13.15896 -13.01236 -12.91061 -12.89575 -12.69780 -12.58693 -12.19890 -12.15126 -11.98125 -11.72250 -11.59964 -11.45646 -11.15504 -11.03568 -10.74460 -10.34673 -10.27791 -10.10199 -8.66975 -8.34352 -6.12734 1.23633 1.42032 1.44634 1.55073 1.57286 1.93049 2.27261 2.49746 2.91675 2.99844 3.30163 3.38578 3.46570 3.66633 3.71564 3.89056 3.98320 4.05546 4.13996 4.22666 4.28194 4.34199 4.41490 4.45561 4.48342 4.53736 4.70084 4.76074 4.80829 4.87574 4.92636 4.95255 5.00400 5.06430 5.08238 5.16807 5.32641 5.42433 5.43069 5.83691 6.20546 6.27452 6.48554 7.06862 7.20724 8.75208 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003172 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.891735 B = 8825.349625 C = 9506.338564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.072 3.928 5 H 0.098 0.902 6 C -0.167 4.167 7 C 0.125 3.875 8 H 0.078 0.922 9 N -0.684 5.684 10 C 0.537 3.463 11 O -0.564 6.564 12 C -0.126 4.126 13 S -0.148 6.148 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.089 3.911 23 C -0.141 4.141 24 C -0.152 4.152 25 C 0.040 3.960 26 O -0.363 6.363 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.417 0.583 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -21.106 -20.375 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.013 3.987 5 H 0.116 0.884 6 C -0.206 4.206 7 C 0.018 3.982 8 H 0.096 0.904 9 N -0.338 5.338 10 C 0.324 3.676 11 O -0.442 6.442 12 C -0.278 4.278 13 S 0.079 5.921 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.199 1.199 22 C 0.047 3.953 23 C -0.178 4.178 24 C -0.189 4.189 25 C -0.035 4.035 26 O -0.281 6.281 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.808 -20.266 -19.133 28.283 hybrid contribution -2.006 -0.016 -0.322 2.032 sum 2.802 -20.282 -19.455 28.244 Atomic orbital electron populations 1.21771 0.92997 1.03320 1.02751 1.22722 0.95998 0.82444 1.01035 1.87781 1.18647 1.28353 1.94400 1.23278 0.82322 0.98114 0.94984 0.88372 1.23952 1.02684 0.95397 0.98593 1.21756 0.86338 0.94769 0.95324 0.90411 1.45262 1.10851 1.38797 1.38877 1.20108 0.89755 0.78737 0.79042 1.90688 1.40025 1.62926 1.50515 1.23337 0.97653 1.02556 1.04217 1.85591 1.14990 1.45801 1.45728 1.23240 0.93969 1.26366 1.25796 0.89886 1.26140 1.03653 0.95344 0.94006 1.70191 1.35501 1.26972 1.22142 0.84887 0.76332 0.78082 0.78518 1.17984 1.19920 1.19883 1.22997 0.84599 0.94584 0.93119 1.22713 0.98887 1.01937 0.94297 1.23179 0.96362 1.00462 0.98935 1.23924 1.00195 0.99914 0.79501 1.88763 1.23802 1.94153 1.21397 0.92963 0.91660 0.89347 0.91560 0.93125 0.91172 0.87279 0.74498 0.87174 0.87299 0.91983 0.88109 0.91074 0.87783 0.91140 0.90130 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.69 6.51 71.98 0.47 1.16 16 3 O -0.37 -6.56 7.89 -148.98 -1.17 -7.74 16 4 C 0.07 1.30 4.07 30.95 0.13 1.43 16 5 H 0.10 1.42 7.90 -2.38 -0.02 1.40 16 6 C -0.17 -3.91 7.71 31.20 0.24 -3.67 16 7 C 0.12 3.46 4.01 45.34 0.18 3.64 16 8 H 0.08 2.65 7.54 -2.39 -0.02 2.63 16 9 N -0.68 -20.15 4.30 -440.87 -1.90 -22.05 16 10 C 0.54 21.37 7.85 87.66 0.69 22.06 16 11 O -0.56 -27.70 15.50 -3.03 -0.05 -27.75 16 12 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 13 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 14 C -0.55 -31.62 9.50 67.95 0.65 -30.97 16 15 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 18 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.09 1.83 1.30 -10.52 -0.01 1.82 16 23 C -0.14 -2.45 5.47 31.44 0.17 -2.28 16 24 C -0.15 -2.05 7.16 31.97 0.23 -1.82 16 25 C 0.04 0.54 7.73 72.68 0.56 1.10 16 26 O -0.36 -7.67 11.27 -148.98 -1.68 -9.35 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.42 10.22 6.80 -92.71 -0.63 9.59 16 35 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 36 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.10 1.50 7.14 -2.38 -0.02 1.49 16 39 H 0.07 1.46 6.98 -2.38 -0.02 1.44 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.98 365.20 1.67 -75.30 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.37 Total: 23.65 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.94 Total: -12.17 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.61 Total: -78.36 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -2.90 Total: -44.84 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -76.98 1.67 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375211905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.157 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds