Wall clock time and date at job start Tue Mar 31 2020 11:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34763 * 116.99905 * 2 1 4 4 O 1.21515 * 119.99872 * 0.02562 * 3 2 1 5 5 C 1.47438 * 120.00097 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.00633 * 180.02562 * 5 3 2 7 7 C 1.36550 * 119.99888 * 180.02562 * 6 5 3 8 8 C 1.39846 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.47524 * 119.99337 * 180.02562 * 8 7 6 10 10 C 1.36137 * 125.94521 * 179.97438 * 9 8 7 11 11 C 1.40782 * 106.73333 * 180.02562 * 10 9 8 12 12 C 1.34854 * 107.04970 * 0.02562 * 11 10 9 13 13 C 1.50704 * 125.64798 * 179.97438 * 12 11 10 14 14 N 1.46895 * 109.47030 * 89.99645 * 13 12 11 15 15 C 1.46906 * 110.99789 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47109 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16 23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16 24 24 O 1.34226 * 108.69803 * 0.23537 * 12 11 10 25 25 C 1.39845 * 120.00776 * 0.27332 * 8 7 6 26 26 C 1.36545 * 120.00646 * 359.44746 * 25 8 7 27 27 H 1.09010 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47228 * 299.99018 * 1 2 3 29 29 H 1.08991 * 109.47715 * 59.99920 * 1 2 3 30 30 H 1.08001 * 120.00319 * 0.02562 * 6 5 3 31 31 H 1.07999 * 119.99571 * 180.02562 * 7 6 5 32 32 H 1.08002 * 126.63184 * 0.02562 * 10 9 8 33 33 H 1.07991 * 126.47636 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.46908 * 329.99463 * 13 12 11 35 35 H 1.09002 * 109.46622 * 209.99637 * 13 12 11 36 36 H 1.00899 * 111.00672 * 56.04735 * 14 13 12 37 37 H 1.08992 * 109.47459 * 299.99826 * 15 14 13 38 38 H 1.09004 * 109.47040 * 59.99976 * 15 14 13 39 39 H 0.97007 * 120.00076 * 179.97438 * 19 18 16 40 40 H 1.08000 * 119.99505 * 179.72802 * 25 8 7 41 41 H 1.07993 * 120.00611 * 180.27332 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5361 1.2780 -0.0006 6 6 4.1713 2.5243 0.0000 7 6 5.5349 2.5956 -0.0011 8 6 6.2965 1.4227 -0.0033 9 6 7.7697 1.5000 -0.0038 10 6 8.6255 0.4412 -0.0054 11 6 9.9288 0.9735 -0.0048 12 6 9.8074 2.3166 -0.0023 13 6 10.9480 3.3015 -0.0003 14 7 11.3189 3.6240 -1.3846 15 6 12.4299 4.5844 -1.4218 16 6 12.7821 4.8899 -2.8549 17 1 12.2349 4.4182 -3.6578 18 6 13.8027 5.7716 -3.1411 19 7 14.1096 6.0386 -4.3917 20 14 14.7485 6.5880 -1.7525 21 1 15.9143 5.7449 -1.3849 22 1 15.2234 7.9236 -2.1953 23 1 13.8596 6.7448 -0.5732 24 8 8.5024 2.6306 0.0038 25 6 5.6617 0.1766 -0.0101 26 6 4.2982 0.1049 -0.0033 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.5832 3.4301 0.0012 31 1 6.0252 3.5579 -0.0003 32 1 8.3565 -0.6048 -0.0068 33 1 10.8514 0.4123 -0.0052 34 1 11.8045 2.8645 0.5129 35 1 10.6411 4.2117 0.5151 36 1 10.5242 3.9709 -1.9005 37 1 12.1330 5.5033 -0.9165 38 1 13.2969 4.1567 -0.9183 39 1 14.8275 6.6592 -4.5930 40 1 6.2501 -0.7290 -0.0162 41 1 3.8080 -0.8574 -0.0041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425982927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:20 Heat of formation + Delta-G solvation = -61.304574 kcal Electronic energy + Delta-G solvation = -23895.018722 eV Core-core repulsion = 20126.919020 eV Total energy + Delta-G solvation = -3768.099702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.59591 -41.66092 -39.90679 -37.55535 -37.35399 -34.71492 -34.30947 -33.44322 -32.31464 -31.17578 -29.23691 -28.28307 -26.26135 -24.49674 -23.94438 -23.12018 -22.48905 -21.98392 -21.19014 -19.30130 -19.06629 -18.53629 -17.95860 -17.43482 -17.24150 -16.95303 -16.32122 -16.01169 -15.90528 -15.62529 -15.40328 -14.86569 -14.65432 -14.58214 -14.49368 -14.14482 -13.97291 -13.81046 -13.75812 -13.40018 -13.16444 -13.03189 -12.94153 -12.52380 -12.45528 -12.12462 -11.86152 -11.84927 -11.73799 -11.53865 -11.09452 -10.81544 -10.58666 -10.22704 -9.31309 -8.90308 -8.30552 -6.36391 -0.83465 0.30347 0.67380 1.36035 1.37055 1.38953 1.49385 1.62389 1.75377 1.78586 2.34284 2.73064 3.03539 3.34098 3.55027 3.65627 3.72883 3.82129 3.88686 4.06418 4.17221 4.26062 4.30083 4.33474 4.41612 4.51725 4.57593 4.69982 4.74705 4.76080 4.88643 4.94828 4.97228 5.03330 5.14213 5.15583 5.29412 5.31962 5.47953 5.56121 5.65562 5.85438 6.13006 6.42117 6.53545 6.58752 6.71487 7.28253 8.86170 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.001989 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.099857 B =14072.883972 C =14611.225879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.538 6.538 5 C -0.145 4.145 6 C -0.052 4.052 7 C -0.130 4.130 8 C 0.023 3.977 9 C -0.013 4.013 10 C -0.165 4.165 11 C -0.196 4.196 12 C -0.004 4.004 13 C 0.134 3.866 14 N -0.684 5.684 15 C 0.174 3.826 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.955 3.045 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.247 1.247 24 O -0.187 6.187 25 C -0.108 4.108 26 C -0.042 4.042 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.336 0.664 37 H -0.007 1.007 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.168 0.832 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.610 -16.759 15.033 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.430 6.430 5 C -0.146 4.146 6 C -0.071 4.071 7 C -0.148 4.148 8 C 0.022 3.978 9 C -0.063 4.063 10 C -0.183 4.183 11 C -0.215 4.215 12 C -0.055 4.055 13 C 0.006 3.994 14 N -0.315 5.315 15 C 0.046 3.954 16 C -0.571 4.571 17 H 0.053 0.947 18 C -0.191 4.191 19 N -0.588 5.588 20 Si 0.777 3.223 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.171 1.171 24 O -0.084 6.084 25 C -0.126 4.126 26 C -0.060 4.060 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.204 0.796 33 H 0.185 0.815 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.152 0.848 37 H 0.011 0.989 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.186 0.814 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -23.441 -16.639 14.867 32.363 hybrid contribution 0.006 1.712 0.080 1.714 sum -23.435 -14.926 14.946 31.550 Atomic orbital electron populations 1.23613 0.74163 1.06066 1.02607 1.86534 1.25290 1.31314 1.83754 1.21298 0.89357 0.81600 0.71868 1.90840 1.67516 1.37128 1.47519 1.19305 0.88987 0.95615 1.10708 1.20954 0.94139 0.97392 0.94567 1.21031 0.93529 0.98721 1.01488 1.18282 0.86665 0.95151 0.97672 1.20710 0.91524 0.83890 1.10147 1.22216 0.91165 1.00655 1.04295 1.21833 0.99819 0.92919 1.06953 1.22675 0.81507 0.96250 1.05045 1.20494 0.92297 0.95294 0.91322 1.60502 1.11157 1.48274 1.11568 1.19814 0.90781 0.89454 0.95358 1.21314 1.17890 1.25512 0.92392 0.94746 1.25925 0.97894 0.96829 0.98431 1.70059 1.31554 1.36754 1.20409 0.85609 0.79327 0.77875 0.79463 1.18710 1.20873 1.17053 1.83966 1.17746 1.34812 1.71884 1.21111 0.94665 0.96670 1.00140 1.21363 0.93078 0.98541 0.92974 0.84487 0.91859 0.91998 0.84276 0.84921 0.79575 0.81522 0.86557 0.93611 0.84755 0.98922 0.94528 0.92299 0.81447 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.46 16 2 O -0.35 -5.28 9.80 -56.74 -0.56 -5.84 16 3 C 0.51 10.19 7.89 70.25 0.55 10.75 16 4 O -0.54 -13.80 16.12 19.79 0.32 -13.48 16 5 C -0.15 -2.65 5.88 -20.06 -0.12 -2.77 16 6 C -0.05 -1.05 9.53 22.27 0.21 -0.84 16 7 C -0.13 -2.75 9.66 22.26 0.22 -2.54 16 8 C 0.02 0.46 5.88 -20.05 -0.12 0.34 16 9 C -0.01 -0.33 7.02 24.23 0.17 -0.16 16 10 C -0.16 -3.48 10.26 22.40 0.23 -3.25 16 11 C -0.20 -4.90 10.78 22.11 0.24 -4.66 16 12 C 0.00 -0.12 6.83 24.91 0.17 0.05 16 13 C 0.13 4.20 6.21 85.56 0.53 4.73 16 14 N -0.68 -27.69 6.48 -521.98 -3.38 -31.07 16 15 C 0.17 8.09 4.51 85.56 0.39 8.47 16 16 C -0.53 -30.87 9.87 25.60 0.25 -30.62 16 17 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 18 C 0.01 0.40 5.47 84.66 0.46 0.86 16 19 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 20 Si 0.95 43.18 27.47 68.60 1.88 45.07 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.25 -10.28 6.54 99.48 0.65 -9.63 16 24 O -0.19 -5.56 10.39 -6.00 -0.06 -5.62 16 25 C -0.11 -1.52 9.50 22.26 0.21 -1.31 16 26 C -0.04 -0.56 9.56 22.27 0.21 -0.34 16 27 H 0.14 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.14 2.74 7.64 -2.91 -0.02 2.72 16 31 H 0.13 2.89 7.90 -2.91 -0.02 2.86 16 32 H 0.19 2.41 7.25 -2.91 -0.02 2.39 16 33 H 0.17 3.62 8.06 -2.92 -0.02 3.60 16 34 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.34 13.99 8.71 -89.69 -0.78 13.21 16 37 H -0.01 -0.31 7.20 -2.39 -0.02 -0.33 16 38 H 0.04 1.63 7.57 -2.38 -0.02 1.62 16 39 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 40 H 0.17 1.33 6.97 -2.91 -0.02 1.31 16 41 H 0.17 1.31 7.59 -2.91 -0.02 1.29 16 Total: -1.00 -73.68 360.33 3.54 -70.15 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.22 Total: 19.60 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.81 Total: -19.83 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.08 Total: -90.04 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.30 Total: -24.94 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -73.68 3.54 -70.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425982927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.842 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds