Wall clock time and date at job start Tue Mar 31 2020 10:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47124 * 2 1 4 4 C 1.34768 * 117.00261 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99741 * 359.97438 * 4 3 2 6 6 C 1.47229 * 120.00488 * 180.02562 * 4 3 2 7 7 C 1.36499 * 127.19826 * 359.67247 * 6 4 3 8 8 O 1.33631 * 108.38494 * 179.87867 * 7 6 4 9 9 C 1.34220 * 110.92217 * 0.41133 * 8 7 6 10 10 C 1.50699 * 125.43050 * 179.78343 * 9 8 7 11 11 N 1.46500 * 109.47261 * 269.95937 * 10 9 8 12 12 C 1.39682 * 119.99821 * 179.97438 * 11 10 9 13 13 C 1.39341 * 119.95362 * 359.73499 * 12 11 10 14 14 C 1.38473 * 120.42165 * 179.71458 * 13 12 11 15 15 C 1.37693 * 120.32537 * 0.55452 * 14 13 12 16 16 C 1.40749 * 119.89250 * 359.72187 * 15 14 13 17 17 C 1.41409 * 120.20637 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00353 * 204.44887 * 17 16 15 19 19 C 1.39932 * 119.99887 * 24.45099 * 17 16 15 20 20 N 1.30826 * 120.00368 * 17.89169 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 197.89296 * 19 17 16 22 22 H 1.48505 * 109.47265 * 89.99682 * 21 19 17 23 23 H 1.48500 * 109.47289 * 210.00067 * 21 19 17 24 24 H 1.48502 * 109.47116 * 329.99825 * 21 19 17 25 25 C 1.38276 * 119.94803 * 179.97438 * 12 11 10 26 26 C 1.34161 * 109.14503 * 359.74834 * 9 8 7 27 27 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47253 * 300.00015 * 1 2 3 29 29 H 1.08999 * 109.47071 * 60.00279 * 1 2 3 30 30 H 1.09006 * 109.46607 * 240.00164 * 2 1 3 31 31 H 1.08994 * 109.47191 * 120.00456 * 2 1 3 32 32 H 1.07996 * 125.81218 * 0.02562 * 7 6 4 33 33 H 1.09005 * 109.47068 * 29.96191 * 10 9 8 34 34 H 1.08998 * 109.47222 * 149.95744 * 10 9 8 35 35 H 0.97001 * 119.99696 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.78695 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.83704 * 180.27201 * 14 13 12 38 38 H 1.08002 * 120.05503 * 179.74648 * 15 14 13 39 39 H 0.97000 * 119.99994 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.16398 * 359.97438 * 25 12 11 41 41 H 1.07994 * 127.02641 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5455 -0.0005 5 8 4.0904 0.5817 -0.0005 6 6 3.9129 2.9060 0.0000 7 6 3.2236 4.0842 -0.0052 8 8 4.1053 5.0883 0.0001 9 6 5.3636 4.6213 -0.0003 10 6 6.6100 5.4684 0.0002 11 7 7.0143 5.7431 -1.3809 12 6 8.1498 6.5156 -1.6356 13 6 8.8941 7.0291 -0.5755 14 6 10.0248 7.7912 -0.8168 15 6 10.4197 8.0595 -2.1083 16 6 9.6746 7.5524 -3.1894 17 6 10.0744 7.8234 -4.5184 18 1 9.3478 7.7971 -5.3170 19 6 11.4116 8.1257 -4.7989 20 7 12.3457 7.8246 -3.9338 21 14 11.8630 8.9590 -6.4086 22 1 11.8262 10.4329 -6.2304 23 1 13.2295 8.5435 -6.8150 24 1 10.8920 8.5632 -7.4602 25 6 8.5308 6.7738 -2.9395 26 6 5.3351 3.2800 -0.0004 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1486 4.1874 -0.0101 33 1 6.4100 6.4087 0.5141 34 1 7.4106 4.9367 0.5142 35 1 6.4930 5.3891 -2.1183 36 1 8.5896 6.8279 0.4410 37 1 10.5972 8.1808 0.0120 38 1 11.3000 8.6578 -2.2916 39 1 13.2726 8.0345 -4.1281 40 1 7.9527 6.3792 -3.7620 41 1 6.1833 2.6114 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449705609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:10 Heat of formation + Delta-G solvation = -69.427947 kcal Electronic energy + Delta-G solvation = -24038.096623 eV Core-core repulsion = 20269.644665 eV Total energy + Delta-G solvation = -3768.451958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.77836 -41.29143 -39.64094 -37.70437 -36.92036 -35.07092 -34.17597 -32.73454 -32.00778 -31.64112 -29.28175 -27.15111 -26.40348 -25.77819 -23.62795 -22.79560 -22.32276 -22.00678 -21.26320 -19.25073 -18.83204 -18.30010 -17.78501 -17.40819 -17.09533 -17.03059 -16.77413 -16.32994 -15.87028 -15.39608 -15.10481 -14.91806 -14.62045 -14.44780 -14.26902 -13.98089 -13.87158 -13.66825 -13.39924 -13.27827 -12.98396 -12.83930 -12.71746 -12.53500 -12.46914 -12.09670 -11.84503 -11.70425 -11.58343 -11.20126 -11.07265 -11.06330 -10.52160 -9.90151 -9.32873 -8.60254 -7.99232 -6.31604 0.04169 0.66620 1.05663 1.34437 1.39748 1.44376 1.52618 1.59997 1.71273 1.90120 2.23391 2.80854 2.86786 3.38595 3.44706 3.84814 3.88022 3.99370 4.05954 4.19210 4.25412 4.34975 4.48565 4.51284 4.60743 4.74068 4.82289 4.88867 4.92836 5.07020 5.11693 5.15259 5.17777 5.21349 5.36397 5.41336 5.56490 5.85170 5.91151 6.02398 6.21012 6.30962 6.60745 6.61022 6.88083 6.94826 7.03328 7.21162 8.38015 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.002062 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.937627 B =13573.338392 C =14097.051567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.543 3.457 5 O -0.543 6.543 6 C -0.265 4.265 7 C 0.097 3.903 8 O -0.167 6.167 9 C -0.021 4.021 10 C 0.215 3.785 11 N -0.753 5.753 12 C 0.234 3.766 13 C -0.300 4.300 14 C -0.074 4.074 15 C -0.231 4.231 16 C 0.110 3.890 17 C -0.503 4.503 18 H 0.071 0.929 19 C 0.036 3.964 20 N -0.823 5.823 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.260 1.260 25 C -0.309 4.309 26 C -0.145 4.145 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.396 0.604 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.287 0.713 40 H 0.089 0.911 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 -9.651 8.935 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.390 3.610 5 O -0.435 6.435 6 C -0.267 4.267 7 C 0.026 3.974 8 O -0.062 6.062 9 C -0.070 4.070 10 C 0.092 3.908 11 N -0.387 5.387 12 C 0.133 3.867 13 C -0.323 4.323 14 C -0.093 4.093 15 C -0.251 4.251 16 C 0.108 3.892 17 C -0.532 4.532 18 H 0.089 0.911 19 C -0.179 4.179 20 N -0.449 5.449 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.333 4.333 26 C -0.165 4.165 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.281 0.719 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.230 0.770 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.810 -9.665 9.198 24.720 hybrid contribution 0.545 -0.426 -1.041 1.250 sum -20.265 -10.091 8.156 24.063 Atomic orbital electron populations 1.21832 0.89869 1.04526 1.03984 1.23353 0.97272 0.78636 1.02658 1.86518 1.22195 1.34175 1.84000 1.20097 0.80879 0.88329 0.71666 1.90843 1.61333 1.43278 1.48043 1.20567 0.94169 0.91490 1.20499 1.25528 0.96761 0.82686 0.92389 1.83847 1.15402 1.36944 1.69984 1.22097 0.84112 0.92700 1.08054 1.19572 0.88285 0.97922 0.85036 1.44455 1.28909 1.59143 1.06165 1.17453 0.86327 0.89907 0.92981 1.20214 1.01832 1.13604 0.96679 1.20750 0.95695 0.97074 0.95796 1.21135 1.03635 1.07965 0.92391 1.17711 0.90299 0.87393 0.93845 1.19800 0.94758 1.44474 0.94196 0.91073 1.26751 0.95689 0.93269 1.02231 1.69913 1.02209 1.35179 1.37576 0.85222 0.78197 0.79100 0.77244 1.18622 1.19219 1.18384 1.20504 1.05613 1.13256 0.93934 1.22618 0.95711 0.94301 1.03827 0.88203 0.90859 0.91069 0.91480 0.91205 0.71886 0.90031 0.88695 0.77026 0.86160 0.87114 0.88585 0.90265 0.89323 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 71.98 0.74 -0.29 16 2 C 0.05 0.75 6.20 71.98 0.45 1.20 16 3 O -0.35 -6.33 10.07 -56.79 -0.57 -6.91 16 4 C 0.54 12.88 7.95 70.18 0.56 13.44 16 5 O -0.54 -16.55 16.77 19.72 0.33 -16.22 16 6 C -0.26 -5.75 6.31 -19.01 -0.12 -5.87 16 7 C 0.10 1.50 11.94 67.41 0.80 2.31 16 8 O -0.17 -3.42 10.52 4.62 0.05 -3.37 16 9 C -0.02 -0.50 6.65 24.76 0.16 -0.33 16 10 C 0.22 5.61 5.42 85.63 0.46 6.07 16 11 N -0.75 -25.31 5.72 -343.29 -1.96 -27.27 16 12 C 0.23 10.14 6.64 38.16 0.25 10.39 16 13 C -0.30 -12.80 9.32 22.59 0.21 -12.59 16 14 C -0.07 -3.49 10.01 22.20 0.22 -3.26 16 15 C -0.23 -12.53 8.70 22.75 0.20 -12.33 16 16 C 0.11 6.19 5.57 -21.31 -0.12 6.07 16 17 C -0.50 -28.15 9.05 23.46 0.21 -27.94 16 18 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 19 C 0.04 1.85 5.14 85.25 0.44 2.29 16 20 N -0.82 -44.38 10.96 21.82 0.24 -44.14 16 21 Si 0.98 39.34 29.59 68.60 2.03 41.37 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 C -0.31 -15.61 9.63 22.86 0.22 -15.39 16 26 C -0.14 -3.50 10.90 23.66 0.26 -3.24 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.27 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.08 2.02 7.93 -2.38 -0.02 2.00 16 34 H 0.10 2.35 7.95 -2.39 -0.02 2.33 16 35 H 0.40 12.71 8.47 -92.71 -0.79 11.92 16 36 H 0.12 4.26 6.70 -2.91 -0.02 4.24 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.10 5.47 6.15 -2.91 -0.02 5.45 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -69.38 361.03 5.34 -64.04 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.28 Total: 31.97 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 4.95 Total: -39.47 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.73 Total: -71.42 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.19 Total: -26.49 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -69.38 5.34 -64.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449705609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.391 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds