Wall clock time and date at job start Tue Mar 31 2020 11:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00266 * 2 1 4 4 C 1.53004 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47136 * 65.00123 * 4 3 2 6 6 C 1.36877 * 120.00012 * 282.38389 * 5 4 3 7 7 H 1.07995 * 119.99920 * 315.10957 * 6 5 4 8 8 C 1.39052 * 120.00003 * 135.11223 * 6 5 4 9 9 N 1.31360 * 119.99948 * 338.10908 * 8 6 5 10 10 Si 1.86801 * 119.99683 * 158.10575 * 8 6 5 11 11 H 1.48500 * 109.47048 * 90.00191 * 10 8 6 12 12 H 1.48498 * 109.46871 * 209.99816 * 10 8 6 13 13 H 1.48497 * 109.47194 * 330.00029 * 10 8 6 14 14 C 1.34774 * 119.99955 * 102.37517 * 5 4 3 15 15 O 1.21595 * 120.00237 * 186.71031 * 14 5 4 16 16 C 1.47741 * 120.00140 * 6.72004 * 14 5 4 17 17 C 1.39725 * 120.09118 * 323.46657 * 16 14 5 18 18 C 1.38000 * 120.09255 * 180.02562 * 17 16 14 19 19 C 1.38181 * 120.27967 * 359.72274 * 18 17 16 20 20 C 1.39425 * 120.17803 * 0.55529 * 19 18 17 21 21 C 1.48442 * 120.04048 * 179.71342 * 20 19 18 22 22 C 1.46704 * 127.11122 * 359.73637 * 21 20 19 23 23 C 1.34379 * 106.02686 * 180.02562 * 22 21 20 24 24 O 1.34164 * 108.98389 * 359.73668 * 23 22 21 25 25 C 1.34088 * 110.73925 * 0.44312 * 24 23 22 26 26 C 1.39077 * 119.91324 * 359.44779 * 20 19 18 27 27 H 1.09002 * 109.46585 * 300.00348 * 1 2 3 28 28 H 1.09005 * 109.46684 * 59.99198 * 1 2 3 29 29 H 1.08994 * 109.47788 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46830 * 60.00607 * 3 2 1 31 31 H 1.08992 * 109.47439 * 300.00317 * 3 2 1 32 32 H 1.09000 * 109.47105 * 305.00584 * 4 3 2 33 33 H 1.09001 * 109.47276 * 185.00336 * 4 3 2 34 34 H 0.96997 * 119.99756 * 185.05032 * 9 8 6 35 35 H 1.08004 * 119.95329 * 0.05098 * 17 16 14 36 36 H 1.08001 * 119.85895 * 180.02562 * 18 17 16 37 37 H 1.07993 * 119.91086 * 180.29659 * 19 18 17 38 38 H 1.08006 * 126.98843 * 0.03110 * 22 21 20 39 39 H 1.07998 * 125.50729 * 179.97438 * 23 22 21 40 40 H 1.08007 * 125.76652 * 179.82365 * 25 24 23 41 41 H 1.07996 * 120.13997 * 180.29254 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.8580 -0.7889 -1.4230 7 1 4.1504 -1.4618 -0.6305 8 6 3.3609 -1.2967 -2.6182 9 7 2.6204 -0.5400 -3.3958 10 14 3.7462 -3.0549 -3.1180 11 1 2.6984 -3.9620 -2.5848 12 1 3.7784 -3.1526 -4.5994 13 1 5.0682 -3.4477 -2.5672 14 6 4.4994 1.3248 -2.2328 15 8 4.7523 0.8314 -3.3150 16 6 4.7652 2.7583 -1.9943 17 6 3.8940 3.5100 -1.2017 18 6 4.1419 4.8492 -0.9793 19 6 5.2545 5.4531 -1.5333 20 6 6.1284 4.7154 -2.3308 21 6 7.3192 5.3688 -2.9296 22 6 7.7221 6.7726 -2.7909 23 6 8.8545 6.9055 -3.5020 24 8 9.1701 5.7203 -4.0458 25 6 8.2605 4.7908 -3.7193 26 6 5.8859 3.3652 -2.5600 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8508 0.5683 0.8426 33 1 3.9786 2.1764 0.0903 34 1 2.2132 -0.9151 -4.1923 35 1 3.0254 3.0422 -0.7621 36 1 3.4662 5.4265 -0.3657 37 1 5.4454 6.5004 -1.3515 38 1 7.2122 7.5427 -2.2310 39 1 9.4213 7.8180 -3.6141 40 1 8.2763 3.7561 -4.0285 41 1 6.5630 2.7892 -3.1733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:22 Heat of formation + Delta-G solvation = 2.137897 kcal Electronic energy + Delta-G solvation = -26118.953066 eV Core-core repulsion = 22353.604436 eV Total energy + Delta-G solvation = -3765.348630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32904 -39.53101 -37.61685 -36.77677 -34.25623 -33.49003 -32.00698 -30.86452 -30.22646 -29.02500 -28.45413 -25.74898 -24.95407 -23.15151 -22.92097 -21.99647 -21.06304 -20.18622 -19.33941 -17.87837 -16.61248 -16.43658 -16.00058 -15.91568 -15.24928 -15.06290 -14.89073 -14.69182 -14.39992 -14.18561 -13.77341 -13.59056 -13.10963 -12.94110 -12.89228 -12.46367 -12.40988 -12.14674 -11.92891 -11.35027 -11.29006 -11.17520 -10.81482 -10.73444 -10.66490 -10.55981 -10.34269 -10.07587 -9.95185 -8.98564 -8.90610 -8.64524 -8.50784 -8.06571 -7.77229 -7.06932 -6.01704 -3.68520 1.17188 1.62177 1.92791 2.76224 3.08058 3.37593 3.46190 3.48866 3.98564 4.34155 4.51592 4.56437 4.68962 4.77310 4.92163 5.14385 5.25683 5.29144 5.36505 5.46267 5.56786 5.65102 5.68024 5.75248 5.84904 5.90587 5.93044 6.04854 6.06680 6.09895 6.13775 6.23404 6.29126 6.35594 6.42473 6.61048 6.76971 6.80199 6.92642 7.14780 7.27276 7.74698 7.95705 8.36204 9.11668 9.21378 9.71296 10.30845 11.07312 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.004014 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.620217 B = 6974.324362 C = 8375.444438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.054 3.946 4 C 0.080 3.920 5 N -0.430 5.430 6 C -0.329 4.329 7 H 0.079 0.921 8 C 0.081 3.919 9 N -0.820 5.820 10 Si 0.907 3.093 11 H -0.283 1.283 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.496 3.504 15 O -0.530 6.530 16 C -0.083 4.083 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.024 4.024 21 C -0.138 4.138 22 C -0.205 4.205 23 C -0.042 4.042 24 O -0.183 6.183 25 C -0.022 4.022 26 C -0.076 4.076 27 H 0.024 0.976 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.261 0.739 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.201 0.799 40 H 0.208 0.792 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 13.677 5.570 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.024 4.024 4 C -0.044 4.044 5 N -0.150 5.150 6 C -0.456 4.456 7 H 0.097 0.903 8 C -0.130 4.130 9 N -0.453 5.453 10 Si 0.734 3.266 11 H -0.210 1.210 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.284 3.716 15 O -0.409 6.409 16 C -0.087 4.087 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.132 4.132 20 C -0.024 4.024 21 C -0.140 4.140 22 C -0.224 4.224 23 C -0.109 4.109 24 O -0.079 6.079 25 C -0.089 4.089 26 C -0.095 4.095 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.157 0.843 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.168 0.832 39 H 0.218 0.782 40 H 0.224 0.776 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.289 13.191 4.630 14.623 hybrid contribution -0.615 -0.396 -0.103 0.738 sum 3.674 12.795 4.527 14.061 Atomic orbital electron populations 1.22600 0.83373 1.01783 0.98463 1.88188 1.17318 1.26088 1.94828 1.22903 0.95404 0.85806 0.98254 1.22237 0.91929 0.99338 0.90943 1.43082 1.52477 1.07045 1.12397 1.18829 1.45034 0.79835 1.01925 0.90294 1.25149 0.93411 0.97833 0.96602 1.69831 1.25741 1.36247 1.13502 0.86305 0.78840 0.83610 0.77818 1.20995 1.21177 1.19656 1.17887 0.82757 0.84470 0.86511 1.90630 1.54106 1.72889 1.23299 1.20536 0.95125 0.96308 0.96763 1.21988 1.00206 0.93964 0.97962 1.20961 0.97643 0.94725 1.00920 1.21035 0.94830 0.99203 0.98120 1.17911 0.93404 0.92763 0.98302 1.20298 0.97301 0.93492 1.02891 1.22810 0.98466 0.96157 1.04968 1.23849 0.98953 0.88267 0.99785 1.83872 1.45712 1.17902 1.60433 1.24233 0.89420 0.94533 1.00709 1.21099 0.97037 0.92979 0.98433 0.95710 0.94721 0.90512 0.94715 0.93482 0.91683 0.88885 0.92891 0.84311 0.86057 0.86486 0.83211 0.78217 0.77573 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 11.01 101.05 1.11 1.70 16 2 O -0.35 -7.36 9.59 -35.23 -0.34 -7.70 16 3 C 0.05 1.02 5.22 37.16 0.19 1.22 16 4 C 0.08 1.58 5.34 -4.04 -0.02 1.56 16 5 N -0.43 -10.81 2.53 -115.92 -0.29 -11.10 16 6 C -0.33 -9.13 8.12 -15.00 -0.12 -9.25 16 7 H 0.08 2.15 7.92 -52.49 -0.42 1.74 16 8 C 0.08 2.32 4.26 -17.45 -0.07 2.24 16 9 N -0.82 -24.41 11.86 55.50 0.66 -23.75 16 10 Si 0.91 22.35 29.61 -169.99 -5.03 17.32 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.50 12.81 6.83 -12.38 -0.08 12.73 16 15 O -0.53 -15.89 14.46 5.28 0.08 -15.82 16 16 C -0.08 -1.74 5.43 -105.01 -0.57 -2.31 16 17 C -0.12 -2.14 7.37 -39.11 -0.29 -2.43 16 18 C -0.12 -1.78 10.02 -39.69 -0.40 -2.18 16 19 C -0.11 -1.61 9.61 -39.16 -0.38 -1.99 16 20 C -0.02 -0.38 5.87 -104.94 -0.62 -0.99 16 21 C -0.14 -1.96 6.24 -103.15 -0.64 -2.61 16 22 C -0.20 -2.35 10.53 -37.53 -0.40 -2.74 16 23 C -0.04 -0.42 12.05 29.37 0.35 -0.07 16 24 O -0.18 -2.26 10.55 6.66 0.07 -2.19 16 25 C -0.02 -0.29 11.52 29.85 0.34 0.06 16 26 C -0.08 -1.43 9.15 -38.82 -0.36 -1.79 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.95 7.12 -51.93 -0.37 0.58 16 32 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.09 1.62 4.10 -51.93 -0.21 1.41 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.14 2.35 3.44 -52.48 -0.18 2.17 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.33 7.24 -52.49 -0.38 0.95 16 38 H 0.15 1.37 7.60 -52.48 -0.40 0.98 16 39 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.21 2.40 7.33 -52.48 -0.38 2.02 16 41 H 0.13 2.34 7.04 -52.49 -0.37 1.97 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -35.36 345.42 -6.40 -41.76 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.81 Total: 3.13 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.94 Total: -6.84 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.37 Total: -34.85 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.19 Total: -25.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.36 -6.40 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.898 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds