Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47264 * 297.49911 * 3 2 1 5 5 C 1.37099 * 119.99750 * 263.96515 * 4 3 2 6 6 H 1.08004 * 119.99726 * 142.61788 * 5 4 3 7 7 C 1.38944 * 120.00088 * 322.61762 * 5 4 3 8 8 N 1.31403 * 120.00380 * 158.75139 * 7 5 4 9 9 Si 1.86798 * 119.99944 * 338.74734 * 7 5 4 10 10 H 1.48492 * 109.47274 * 92.41201 * 9 7 5 11 11 H 1.48503 * 109.47384 * 212.41410 * 9 7 5 12 12 H 1.48508 * 109.47303 * 332.41031 * 9 7 5 13 13 C 1.34771 * 120.00185 * 83.96093 * 4 3 2 14 14 O 1.21292 * 120.00361 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99964 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47279 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47503 * 179.97438 * 16 15 13 18 18 C 1.37967 * 120.07572 * 98.00850 * 17 16 15 19 19 C 1.38349 * 120.15011 * 179.97438 * 18 17 16 20 20 C 1.38386 * 120.30119 * 0.04401 * 19 18 17 21 21 C 1.37919 * 120.15374 * 0.02562 * 20 19 18 22 22 C 1.39606 * 120.07806 * 277.73867 * 17 16 15 23 23 C 1.47727 * 120.14899 * 359.97438 * 22 17 16 24 24 O 1.21469 * 119.99953 * 3.12275 * 23 22 17 25 25 O 1.34708 * 120.00123 * 183.12090 * 23 22 17 26 26 C 1.45203 * 117.00139 * 179.97438 * 25 23 22 27 27 H 4.40644 * 5.51492 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.46639 * 177.49713 * 3 2 1 29 29 H 1.08998 * 109.46751 * 57.49880 * 3 2 1 30 30 H 0.96999 * 120.00544 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47626 * 59.99895 * 15 13 4 32 32 H 1.09000 * 109.47272 * 299.99498 * 15 13 4 33 33 H 1.09002 * 109.47300 * 60.00038 * 16 15 13 34 34 H 1.09004 * 109.47479 * 300.00344 * 16 15 13 35 35 H 1.07997 * 119.92304 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.84625 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.92258 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.07467 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47245 * 180.02562 * 26 25 23 40 40 H 1.08999 * 109.47110 * 300.00028 * 26 25 23 41 41 H 1.08998 * 109.47154 * 60.00424 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6369 1.2251 5 6 3.4805 0.1315 2.3067 6 1 3.2623 -0.2141 3.3064 7 6 4.1117 1.3546 2.1166 8 7 4.0737 2.2674 3.0610 9 14 5.0143 1.7014 0.5184 10 1 4.0926 2.3678 -0.4362 11 1 6.1745 2.5885 0.7875 12 1 5.4938 0.4234 -0.0668 13 6 3.2441 -1.9786 1.2891 14 8 3.6491 -2.5064 2.3033 15 6 2.8644 -2.8231 0.1001 16 6 3.0817 -4.3004 0.4336 17 6 2.7014 -5.1450 -0.7551 18 6 3.6751 -5.5984 -1.6210 19 6 3.3278 -6.3744 -2.7125 20 6 2.0030 -6.7003 -2.9442 21 6 1.0193 -6.2525 -2.0875 22 6 1.3636 -5.4752 -0.9796 23 6 0.3163 -4.9987 -0.0531 24 8 0.6107 -4.2714 0.8741 25 8 -0.9653 -5.3708 -0.2366 26 6 -1.9409 -4.8652 0.7126 27 1 -1.0499 0.0000 0.0003 28 1 3.0088 1.0275 -0.0449 29 1 3.0095 -0.5514 -0.8667 30 1 4.5147 3.1211 2.9285 31 1 3.4844 -2.5488 -0.7533 32 1 1.8154 -2.6560 -0.1442 33 1 2.4619 -4.5752 1.2871 34 1 4.1308 -4.4674 0.6777 35 1 4.7109 -5.3478 -1.4459 36 1 4.0941 -6.7270 -3.3869 37 1 1.7386 -7.3061 -3.7984 38 1 -0.0143 -6.5074 -2.2698 39 1 -2.9305 -5.2399 0.4510 40 1 -1.6793 -5.2009 1.7161 41 1 -1.9453 -3.7756 0.6835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490960166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = -17.790271 kcal Electronic energy + Delta-G solvation = -26251.637870 eV Core-core repulsion = 22485.425090 eV Total energy + Delta-G solvation = -3766.212780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77570 -39.09293 -38.64237 -36.50048 -35.33917 -33.60450 -32.57158 -31.65139 -31.51895 -29.74119 -27.79179 -26.70373 -25.68338 -24.10844 -23.31998 -21.64641 -20.60525 -18.82698 -18.38039 -17.96635 -16.96787 -16.69238 -16.41729 -16.20584 -15.70827 -15.46992 -15.43279 -14.67435 -14.54768 -13.95881 -13.67341 -13.43950 -13.30545 -13.10891 -12.90807 -12.79011 -12.54736 -12.22661 -12.05747 -11.99674 -11.76568 -11.51355 -11.10805 -10.95783 -10.89832 -10.74658 -10.54972 -10.19789 -9.86968 -9.71606 -9.48312 -9.19308 -9.08603 -8.93023 -8.40855 -7.81482 -6.35604 -3.93242 0.60439 1.19115 2.53991 2.64209 3.00887 3.19157 3.23484 3.24226 3.40282 3.62748 3.82624 4.16061 4.51049 4.57602 4.73015 4.75522 4.83872 4.94013 5.05644 5.14040 5.15384 5.16608 5.26463 5.44672 5.52805 5.58649 5.65647 5.70583 5.81195 5.90426 5.98968 6.11036 6.14217 6.19354 6.25522 6.30239 6.43719 6.57995 6.66992 6.84151 7.57456 7.79622 8.15107 8.33629 8.54005 9.00371 9.34390 9.81070 10.76942 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.004375 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.343439 B = 6398.205057 C = 7221.677651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.172 4.172 3 C 0.190 3.810 4 N -0.468 5.468 5 C -0.312 4.312 6 H 0.105 0.895 7 C 0.059 3.941 8 N -0.864 5.864 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.482 3.518 14 O -0.556 6.556 15 C -0.122 4.122 16 C -0.077 4.077 17 C -0.007 4.007 18 C -0.131 4.131 19 C -0.082 4.082 20 C -0.145 4.145 21 C -0.062 4.062 22 C -0.127 4.127 23 C 0.495 3.505 24 O -0.474 6.474 25 O -0.361 6.361 26 C 0.037 3.963 27 H 0.211 0.789 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.274 0.726 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 -15.719 -15.223 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C 0.067 3.933 4 N -0.190 5.190 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.146 4.146 8 N -0.500 5.500 9 Si 0.694 3.306 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.271 3.729 14 O -0.436 6.436 15 C -0.163 4.163 16 C -0.114 4.114 17 C -0.008 4.008 18 C -0.149 4.149 19 C -0.100 4.100 20 C -0.163 4.163 21 C -0.080 4.080 22 C -0.128 4.128 23 C 0.339 3.661 24 O -0.361 6.361 25 O -0.278 6.278 26 C -0.057 4.057 27 H 0.228 0.772 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.367 -15.558 -14.285 22.369 hybrid contribution 0.051 0.603 -0.753 0.966 sum -7.316 -14.956 -15.037 22.435 Atomic orbital electron populations 1.24651 0.95608 1.02198 1.01469 1.23790 0.94919 0.99233 0.99381 1.18957 0.84027 1.00349 0.89925 1.43687 1.57587 1.04826 1.12900 1.19052 1.37481 0.99990 0.87429 0.87705 1.25343 0.96351 0.95415 0.97502 1.69747 1.40753 1.05014 1.34512 0.87138 0.80399 0.79134 0.83922 1.20018 1.21006 1.18444 1.20182 0.80888 0.82526 0.89323 1.90546 1.48522 1.71607 1.32940 1.21502 1.02817 0.94063 0.97875 1.20664 1.03098 0.92369 0.95274 1.20254 0.91029 0.93752 0.95732 1.21129 0.99700 0.99159 0.94879 1.21425 0.96483 0.95623 0.96487 1.21098 0.92878 1.01960 1.00345 1.21419 1.00249 0.93997 0.92347 1.18987 0.91568 1.04830 0.97392 1.21275 0.82186 0.78570 0.84063 1.90957 1.81406 1.33026 1.30690 1.86495 1.17875 1.69301 1.54174 1.23261 0.89862 1.00318 0.92214 0.77179 0.88506 0.89800 0.91610 0.90774 0.89697 0.87521 0.90504 0.84819 0.85446 0.85394 0.84682 0.88244 0.91765 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.99 19.25 29.55 0.57 -3.42 16 2 C -0.17 -3.56 12.93 -37.12 -0.48 -4.04 16 3 C 0.19 4.14 4.26 -6.83 -0.03 4.11 16 4 N -0.47 -12.01 2.16 -117.94 -0.26 -12.27 16 5 C -0.31 -9.22 9.37 -14.93 -0.14 -9.36 16 6 H 0.11 3.49 7.91 -52.48 -0.42 3.07 16 7 C 0.06 1.68 5.29 -17.47 -0.09 1.59 16 8 N -0.86 -25.57 13.96 55.50 0.77 -24.80 16 9 Si 0.87 20.47 25.07 -169.99 -4.26 16.21 16 10 H -0.27 -5.97 6.55 56.52 0.37 -5.60 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.48 11.93 7.56 -10.99 -0.08 11.85 16 14 O -0.56 -15.69 15.85 5.55 0.09 -15.60 16 15 C -0.12 -2.34 3.84 -27.88 -0.11 -2.45 16 16 C -0.08 -1.33 3.89 -27.88 -0.11 -1.44 16 17 C -0.01 -0.10 5.17 -104.21 -0.54 -0.64 16 18 C -0.13 -1.46 9.66 -39.64 -0.38 -1.84 16 19 C -0.08 -0.73 10.04 -39.49 -0.40 -1.13 16 20 C -0.14 -1.25 10.03 -39.64 -0.40 -1.65 16 21 C -0.06 -0.64 9.62 -39.17 -0.38 -1.01 16 22 C -0.13 -1.68 5.87 -104.98 -0.62 -2.30 16 23 C 0.49 7.33 7.77 34.61 0.27 7.60 16 24 O -0.47 -8.65 11.49 -19.24 -0.22 -8.87 16 25 O -0.36 -4.47 9.82 -40.51 -0.40 -4.87 16 26 C 0.04 0.37 10.56 101.05 1.07 1.44 16 27 H 0.21 2.85 7.80 -54.09 -0.42 2.43 16 28 H 0.10 2.18 3.40 -51.93 -0.18 2.00 16 29 H 0.08 1.53 6.69 -51.93 -0.35 1.18 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.08 1.64 6.08 -51.93 -0.32 1.32 16 33 H 0.11 2.10 5.80 -51.93 -0.30 1.80 16 34 H 0.08 1.30 7.98 -51.93 -0.41 0.89 16 35 H 0.13 1.31 8.05 -52.49 -0.42 0.89 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.14 1.15 7.62 -52.49 -0.40 0.75 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -35.56 351.83 -5.70 -41.26 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.88 Total: 6.32 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.84 Total: -2.67 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.52 Total: -37.07 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.53 Total: -29.35 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.26 Total: 16.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.56 -5.70 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.466 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds