Wall clock time and date at job start Tue Mar 31 2020 11:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47264 * 297.49911 * 3 2 1 5 5 C 1.37099 * 119.99750 * 263.96515 * 4 3 2 6 6 H 1.08004 * 119.99726 * 142.61788 * 5 4 3 7 7 C 1.38944 * 120.00088 * 322.61762 * 5 4 3 8 8 N 1.31403 * 120.00380 * 158.75139 * 7 5 4 9 9 Si 1.86798 * 119.99944 * 338.74734 * 7 5 4 10 10 H 1.48492 * 109.47274 * 92.41201 * 9 7 5 11 11 H 1.48503 * 109.47384 * 212.41410 * 9 7 5 12 12 H 1.48508 * 109.47303 * 332.41031 * 9 7 5 13 13 C 1.34771 * 120.00185 * 83.96093 * 4 3 2 14 14 O 1.21292 * 120.00361 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99964 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47279 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47503 * 179.97438 * 16 15 13 18 18 C 1.37967 * 120.07572 * 98.00850 * 17 16 15 19 19 C 1.38349 * 120.15011 * 179.97438 * 18 17 16 20 20 C 1.38386 * 120.30119 * 0.04401 * 19 18 17 21 21 C 1.37919 * 120.15374 * 0.02562 * 20 19 18 22 22 C 1.39606 * 120.07806 * 277.73867 * 17 16 15 23 23 C 1.47727 * 120.14899 * 359.97438 * 22 17 16 24 24 O 1.21469 * 119.99953 * 3.12275 * 23 22 17 25 25 O 1.34708 * 120.00123 * 183.12090 * 23 22 17 26 26 C 1.45203 * 117.00139 * 179.97438 * 25 23 22 27 27 H 4.40644 * 5.51492 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.46639 * 177.49713 * 3 2 1 29 29 H 1.08998 * 109.46751 * 57.49880 * 3 2 1 30 30 H 0.96999 * 120.00544 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47626 * 59.99895 * 15 13 4 32 32 H 1.09000 * 109.47272 * 299.99498 * 15 13 4 33 33 H 1.09002 * 109.47300 * 60.00038 * 16 15 13 34 34 H 1.09004 * 109.47479 * 300.00344 * 16 15 13 35 35 H 1.07997 * 119.92304 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.84625 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.92258 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.07467 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47245 * 180.02562 * 26 25 23 40 40 H 1.08999 * 109.47110 * 300.00028 * 26 25 23 41 41 H 1.08998 * 109.47154 * 60.00424 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6369 1.2251 5 6 3.4805 0.1315 2.3067 6 1 3.2623 -0.2141 3.3064 7 6 4.1117 1.3546 2.1166 8 7 4.0737 2.2674 3.0610 9 14 5.0143 1.7014 0.5184 10 1 4.0926 2.3678 -0.4362 11 1 6.1745 2.5885 0.7875 12 1 5.4938 0.4234 -0.0668 13 6 3.2441 -1.9786 1.2891 14 8 3.6491 -2.5064 2.3033 15 6 2.8644 -2.8231 0.1001 16 6 3.0817 -4.3004 0.4336 17 6 2.7014 -5.1450 -0.7551 18 6 3.6751 -5.5984 -1.6210 19 6 3.3278 -6.3744 -2.7125 20 6 2.0030 -6.7003 -2.9442 21 6 1.0193 -6.2525 -2.0875 22 6 1.3636 -5.4752 -0.9796 23 6 0.3163 -4.9987 -0.0531 24 8 0.6107 -4.2714 0.8741 25 8 -0.9653 -5.3708 -0.2366 26 6 -1.9409 -4.8652 0.7126 27 1 -1.0499 0.0000 0.0003 28 1 3.0088 1.0275 -0.0449 29 1 3.0095 -0.5514 -0.8667 30 1 4.5147 3.1211 2.9285 31 1 3.4844 -2.5488 -0.7533 32 1 1.8154 -2.6560 -0.1442 33 1 2.4619 -4.5752 1.2871 34 1 4.1308 -4.4674 0.6777 35 1 4.7109 -5.3478 -1.4459 36 1 4.0941 -6.7270 -3.3869 37 1 1.7386 -7.3061 -3.7984 38 1 -0.0143 -6.5074 -2.2698 39 1 -2.9305 -5.2399 0.4510 40 1 -1.6793 -5.2009 1.7161 41 1 -1.9453 -3.7756 0.6835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:07 Heat of formation + Delta-G solvation = -40.712876 kcal Electronic energy + Delta-G solvation = -26252.631869 eV Core-core repulsion = 22485.425090 eV Total energy + Delta-G solvation = -3767.206779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83405 -40.73774 -39.77961 -37.60292 -37.24133 -34.96225 -34.42330 -33.35488 -32.48700 -30.95544 -28.70551 -28.44247 -27.37597 -25.34790 -24.52876 -22.67505 -21.61812 -20.63616 -20.21029 -18.93155 -18.58183 -18.05355 -17.79005 -17.56134 -17.33979 -16.75139 -16.47180 -15.97525 -15.72253 -15.47606 -15.02153 -14.93099 -14.67192 -14.42761 -14.36084 -14.17233 -13.85756 -13.71968 -13.53649 -13.05325 -12.87422 -12.83922 -12.65211 -12.57254 -12.24435 -12.04072 -11.93709 -11.73875 -11.43337 -11.20699 -11.07047 -11.03984 -10.44931 -9.99806 -9.92282 -9.73681 -8.54829 -6.20312 -0.27968 0.38962 1.15224 1.28085 1.41893 1.55140 1.61682 1.70702 1.86179 1.92751 2.15059 2.73564 2.86374 2.92497 3.52123 3.64955 3.68845 3.91086 4.02652 4.08725 4.17643 4.23271 4.26193 4.30282 4.31338 4.36271 4.48452 4.50556 4.64923 4.68616 4.84465 4.94910 5.01389 5.06371 5.14205 5.35933 5.38471 5.48348 5.50998 5.64328 5.94980 5.97883 6.47476 6.66052 6.73519 6.87217 7.20212 7.78858 8.62903 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.004375 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.343439 B = 6398.205057 C = 7221.677651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.232 4.232 3 C 0.189 3.811 4 N -0.477 5.477 5 C -0.338 4.338 6 H 0.037 0.963 7 C 0.012 3.988 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.236 1.236 11 H -0.279 1.279 12 H -0.247 1.247 13 C 0.470 3.530 14 O -0.607 6.607 15 C -0.104 4.104 16 C -0.068 4.068 17 C -0.029 4.029 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.058 4.058 22 C -0.148 4.148 23 C 0.493 3.507 24 O -0.522 6.522 25 O -0.355 6.355 26 C 0.031 3.969 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.282 0.718 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.053 0.947 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 -17.127 -20.688 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.233 4.233 3 C 0.067 3.933 4 N -0.198 5.198 5 C -0.466 4.466 6 H 0.055 0.945 7 C -0.190 4.190 8 N -0.547 5.547 9 Si 0.763 3.237 10 H -0.161 1.161 11 H -0.205 1.205 12 H -0.170 1.170 13 C 0.261 3.739 14 O -0.491 6.491 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.030 4.030 18 C -0.153 4.153 19 C -0.087 4.087 20 C -0.149 4.149 21 C -0.076 4.076 22 C -0.149 4.149 23 C 0.339 3.661 24 O -0.413 6.413 25 O -0.271 6.271 26 C -0.062 4.062 27 H 0.269 0.731 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.072 0.928 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.960 -16.973 -19.787 27.258 hybrid contribution 0.060 0.953 1.020 1.397 sum -7.900 -16.021 -18.767 25.909 Atomic orbital electron populations 1.25655 0.96549 0.99339 0.98505 1.23886 0.95488 1.01891 1.02049 1.19060 0.85143 1.00102 0.88954 1.43785 1.57809 1.05046 1.13182 1.18609 1.40052 1.01404 0.86547 0.94458 1.26211 0.96072 0.94219 1.02530 1.69868 1.41461 1.05810 1.37590 0.85958 0.79031 0.79815 0.78859 1.16117 1.20482 1.17044 1.21266 0.79565 0.82709 0.90335 1.90500 1.50653 1.72627 1.35346 1.21412 1.03076 0.94146 0.95745 1.20413 1.01842 0.92020 0.96258 1.19976 0.92246 0.95255 0.95480 1.21308 0.99541 0.99363 0.95102 1.21848 0.97682 0.93668 0.95526 1.21575 0.92202 1.00689 1.00426 1.21672 1.01825 0.92894 0.91257 1.19057 0.90750 1.06540 0.98524 1.21774 0.83085 0.77628 0.83583 1.90951 1.82133 1.35447 1.32751 1.86492 1.17297 1.68927 1.54409 1.23513 0.91016 0.99981 0.91678 0.73059 0.89242 0.85988 0.90854 0.87603 0.89656 0.91039 0.91256 0.83889 0.81824 0.81580 0.82917 0.84180 0.92792 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 19.25 74.32 1.43 -4.83 16 2 C -0.23 -9.44 12.93 31.13 0.40 -9.04 16 3 C 0.19 8.08 4.26 84.57 0.36 8.44 16 4 N -0.48 -25.41 2.16 -645.43 -1.40 -26.80 16 5 C -0.34 -21.35 9.37 84.04 0.79 -20.56 16 6 H 0.04 2.77 7.91 -2.91 -0.02 2.75 16 7 C 0.01 0.69 5.29 84.93 0.45 1.14 16 8 N -0.91 -56.26 13.96 21.66 0.30 -55.96 16 9 Si 0.94 42.14 25.07 68.60 1.72 43.86 16 10 H -0.24 -9.20 6.55 99.48 0.65 -8.55 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 13 C 0.47 24.52 7.56 87.66 0.66 25.19 16 14 O -0.61 -37.18 15.85 -3.07 -0.05 -37.23 16 15 C -0.10 -4.04 3.84 29.85 0.11 -3.92 16 16 C -0.07 -2.45 3.89 29.85 0.12 -2.33 16 17 C -0.03 -0.79 5.17 -19.60 -0.10 -0.89 16 18 C -0.14 -2.65 9.66 22.23 0.21 -2.43 16 19 C -0.07 -0.90 10.04 22.33 0.22 -0.67 16 20 C -0.13 -1.57 10.03 22.23 0.22 -1.35 16 21 C -0.06 -1.00 9.62 22.54 0.22 -0.78 16 22 C -0.15 -3.75 5.87 -20.10 -0.12 -3.87 16 23 C 0.49 14.79 7.77 70.33 0.55 15.34 16 24 O -0.52 -20.24 11.49 19.94 0.23 -20.01 16 25 O -0.35 -8.51 9.82 -56.18 -0.55 -9.06 16 26 C 0.03 0.61 10.56 113.37 1.20 1.81 16 27 H 0.25 5.95 7.80 -4.42 -0.03 5.91 16 28 H 0.09 3.88 3.40 -2.39 -0.01 3.88 16 29 H 0.12 4.14 6.69 -2.39 -0.02 4.12 16 30 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.11 3.37 7.42 -2.39 -0.02 3.35 16 32 H 0.09 3.34 6.08 -2.39 -0.01 3.33 16 33 H 0.07 3.08 5.80 -2.39 -0.01 3.07 16 34 H 0.07 2.49 7.98 -2.38 -0.02 2.47 16 35 H 0.14 2.45 8.05 -2.91 -0.02 2.43 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.15 2.02 7.62 -2.91 -0.02 1.99 16 39 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -87.83 351.83 7.98 -79.85 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.00 Total: 24.11 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.73 Total: 1.24 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.09 Total: -82.76 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -0.37 Total: -66.30 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.72 Total: 43.86 kcal Total: -87.83 7.98 -79.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.133 kcal (2) G-P(sol) polarization free energy of solvation -87.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds