Wall clock time and date at job start Tue Mar 31 2020 10:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47016 * 316.74465 * 3 2 1 5 5 C 1.37098 * 120.00124 * 264.16130 * 4 3 2 6 6 H 1.07994 * 120.00317 * 192.98986 * 5 4 3 7 7 C 1.38951 * 119.99846 * 12.99895 * 5 4 3 8 8 N 1.31414 * 120.00071 * 27.52507 * 7 5 4 9 9 Si 1.86798 * 120.00241 * 207.52202 * 7 5 4 10 10 H 1.48503 * 109.46974 * 94.97719 * 9 7 5 11 11 H 1.48492 * 109.47722 * 214.97958 * 9 7 5 12 12 H 1.48501 * 109.47170 * 334.98355 * 9 7 5 13 13 C 1.34775 * 120.00311 * 84.16938 * 4 3 2 14 14 O 1.21293 * 120.00293 * 182.83848 * 13 4 3 15 15 C 1.50703 * 119.99698 * 2.84200 * 13 4 3 16 16 H 1.09005 * 109.47073 * 328.75600 * 15 13 4 17 17 C 1.50702 * 109.46921 * 208.75860 * 15 13 4 18 18 O 1.20826 * 120.00000 * 359.97438 * 17 15 13 19 19 O 1.34230 * 119.99769 * 179.72184 * 17 15 13 20 20 C 1.45203 * 116.99698 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.46919 * 179.97438 * 20 19 17 22 22 C 1.50696 * 109.47455 * 88.75878 * 15 13 4 23 23 C 1.38236 * 120.00132 * 77.81968 * 22 15 13 24 24 C 1.38231 * 120.00258 * 179.81295 * 23 22 15 25 25 C 1.38240 * 119.99821 * 0.39237 * 24 23 22 26 26 C 1.38234 * 119.99791 * 359.85880 * 25 24 23 27 27 C 1.38232 * 120.00179 * 359.95523 * 26 25 24 28 28 H 4.40634 * 5.51474 * 179.97438 * 4 1 2 29 29 H 1.08991 * 109.46912 * 196.74243 * 3 2 1 30 30 H 1.08997 * 109.46835 * 76.74471 * 3 2 1 31 31 H 0.96998 * 120.00202 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47190 * 299.99905 * 20 19 17 33 33 H 1.09001 * 109.47010 * 60.00568 * 20 19 17 34 34 H 1.08999 * 109.47379 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.47593 * 300.00137 * 21 20 19 36 36 H 1.09005 * 109.47178 * 60.00277 * 21 20 19 37 37 H 1.08000 * 119.99923 * 359.97438 * 23 22 15 38 38 H 1.07995 * 120.00524 * 180.22608 * 24 23 22 39 39 H 1.08000 * 120.00191 * 179.83683 * 25 24 23 40 40 H 1.08004 * 119.99925 * 179.97438 * 26 25 24 41 41 H 1.08001 * 119.99939 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0051 0.9465 5 6 3.4770 -0.6369 2.2220 6 1 4.0287 -1.3194 2.8514 7 6 3.1138 0.6143 2.7050 8 7 2.0468 1.2173 2.2309 9 14 4.1422 1.4392 4.0284 10 1 5.1197 2.3596 3.3938 11 1 3.2550 2.2091 4.9368 12 1 4.8697 0.4046 4.8067 13 6 3.2482 -2.2922 0.5633 14 8 3.6037 -3.1335 1.3614 15 6 2.9335 -2.6861 -0.8569 16 1 2.1580 -2.0301 -1.2525 17 6 2.4480 -4.1125 -0.8867 18 8 2.3665 -4.7445 0.1399 19 8 2.1014 -4.6792 -2.0531 20 6 1.6434 -6.0563 -2.0064 21 6 1.2957 -6.5263 -3.4203 22 6 4.1761 -2.5607 -1.7002 23 6 5.1545 -3.5352 -1.6386 24 6 6.2926 -3.4221 -2.4150 25 6 6.4559 -2.3303 -3.2470 26 6 5.4798 -1.3532 -3.3048 27 6 4.3400 -1.4683 -2.5312 28 1 -1.0498 -0.0001 0.0004 29 1 3.0089 0.9848 0.2960 30 1 3.0094 -0.2348 -1.0003 31 1 1.7935 2.0909 2.5678 32 1 2.4318 -6.6877 -1.5969 33 1 0.7584 -6.1236 -1.3737 34 1 0.9515 -7.5599 -3.3854 35 1 0.5071 -5.8948 -3.8296 36 1 2.1804 -6.4589 -4.0535 37 1 5.0286 -4.3863 -0.9857 38 1 7.0553 -4.1853 -2.3696 39 1 7.3463 -2.2406 -3.8517 40 1 5.6076 -0.5000 -3.9545 41 1 3.5777 -0.7046 -2.5760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491340350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:44 Heat of formation + Delta-G solvation = -16.735351 kcal Electronic energy + Delta-G solvation = -26788.546163 eV Core-core repulsion = 23022.379127 eV Total energy + Delta-G solvation = -3766.167035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62848 -39.06512 -38.19493 -36.24806 -35.06054 -33.19224 -32.05951 -31.47827 -31.20930 -30.74290 -28.08963 -26.53903 -24.77767 -23.38235 -22.50819 -21.82522 -21.13416 -18.97323 -17.97831 -17.59632 -17.01208 -16.52942 -16.30126 -15.79154 -15.75908 -15.11487 -14.73585 -14.34643 -14.13715 -13.98755 -13.83115 -13.25863 -13.14629 -12.84121 -12.72464 -12.53906 -12.36360 -12.11965 -12.02632 -11.72363 -11.63169 -11.49354 -11.08037 -10.99739 -10.75353 -10.50213 -10.32902 -10.31511 -9.92951 -9.47834 -9.29144 -8.96621 -8.93887 -8.73469 -8.15220 -7.92314 -6.40825 -3.83403 1.45672 1.57401 2.62364 2.77938 3.14498 3.26013 3.31671 3.62745 3.77159 3.90090 4.00800 4.17228 4.77492 4.85602 4.90412 4.95141 5.00568 5.04893 5.10403 5.16664 5.24535 5.30414 5.42188 5.47684 5.58852 5.63236 5.75780 5.78376 5.82362 5.94004 6.03348 6.18066 6.24800 6.59253 6.64235 6.66798 6.68979 6.74687 6.93385 7.13138 7.54691 7.96647 8.18934 8.38793 8.70012 9.09492 9.29930 9.85131 10.61434 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.005138 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.030739 B = 5447.783109 C = 6240.663284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.127 4.127 3 C 0.221 3.779 4 N -0.431 5.431 5 C -0.315 4.315 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.854 5.854 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.461 3.539 14 O -0.543 6.543 15 C -0.059 4.059 16 H 0.121 0.879 17 C 0.473 3.527 18 O -0.462 6.462 19 O -0.359 6.359 20 C 0.060 3.940 21 C -0.150 4.150 22 C -0.060 4.060 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.108 4.108 28 H 0.201 0.799 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.269 0.731 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -5.060 -14.801 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.128 4.128 3 C 0.098 3.902 4 N -0.150 5.150 5 C -0.442 4.442 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.491 5.491 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.247 3.753 14 O -0.424 6.424 15 C -0.081 4.081 16 H 0.139 0.861 17 C 0.312 3.688 18 O -0.345 6.345 19 O -0.277 6.277 20 C -0.014 4.014 21 C -0.207 4.207 22 C -0.061 4.061 23 C -0.118 4.118 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.135 4.135 27 C -0.126 4.126 28 H 0.218 0.782 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.013 -5.541 -13.996 15.187 hybrid contribution -0.122 0.572 0.825 1.011 sum 1.890 -4.969 -13.171 14.204 Atomic orbital electron populations 1.24350 0.95434 1.02911 1.04104 1.23269 0.94458 0.98159 0.96956 1.18515 0.84205 0.96058 0.91429 1.43614 1.55729 1.04104 1.11509 1.19701 1.33545 1.00443 0.90478 0.87414 1.25232 0.95322 0.97749 0.98787 1.70185 1.19387 1.15968 1.43556 0.86054 0.79903 0.79369 0.80344 1.20280 1.21111 1.19231 1.18934 0.86278 0.83215 0.86846 1.90620 1.50387 1.48460 1.52901 1.20079 0.97515 0.91995 0.98525 0.86082 1.22814 0.75286 0.89133 0.81520 1.90763 1.46939 1.63033 1.33758 1.86505 1.76740 1.29187 1.35265 1.22953 0.99770 0.79855 0.98777 1.21780 1.02682 1.01131 0.95079 1.19178 0.94494 0.95999 0.96429 1.21033 0.93603 0.98847 0.98270 1.21053 0.97329 0.98351 0.96747 1.21112 0.98996 0.94592 0.99305 1.21055 0.93962 0.99019 0.99486 1.21073 0.98443 0.97065 0.95976 0.78152 0.86826 0.91613 0.92067 0.91422 0.91422 0.90532 0.91554 0.91559 0.86191 0.86107 0.86217 0.85842 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.07 19.25 29.55 0.57 -4.50 16 2 C -0.13 -2.80 10.92 -37.12 -0.41 -3.20 16 3 C 0.22 4.80 4.78 -6.83 -0.03 4.77 16 4 N -0.43 -10.92 2.60 -117.94 -0.31 -11.22 16 5 C -0.32 -8.69 9.34 -14.93 -0.14 -8.83 16 6 H 0.11 3.17 7.39 -52.49 -0.39 2.78 16 7 C 0.03 0.88 4.75 -17.47 -0.08 0.80 16 8 N -0.85 -22.14 9.75 55.50 0.54 -21.60 16 9 Si 0.92 20.32 29.63 -169.99 -5.04 15.28 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.46 11.56 6.47 -10.98 -0.07 11.49 16 14 O -0.54 -15.69 14.47 -17.94 -0.26 -15.95 16 15 C -0.06 -1.17 2.10 -94.08 -0.20 -1.37 16 16 H 0.12 2.24 5.86 -51.93 -0.30 1.94 16 17 C 0.47 9.55 6.05 36.01 0.22 9.76 16 18 O -0.46 -10.97 14.36 -26.53 -0.38 -11.35 16 19 O -0.36 -5.95 10.14 -39.26 -0.40 -6.35 16 20 C 0.06 0.80 6.19 37.16 0.23 1.03 16 21 C -0.15 -1.41 10.29 37.16 0.38 -1.02 16 22 C -0.06 -1.05 4.70 -104.63 -0.49 -1.54 16 23 C -0.10 -1.67 9.13 -39.58 -0.36 -2.04 16 24 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 27 C -0.11 -1.58 8.80 -39.59 -0.35 -1.93 16 28 H 0.20 3.30 7.80 -54.10 -0.42 2.88 16 29 H 0.11 2.59 6.30 -51.93 -0.33 2.26 16 30 H 0.07 1.19 3.79 -51.93 -0.20 0.99 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 2.18 7.47 -52.49 -0.39 1.79 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.13 1.67 6.24 -52.49 -0.33 1.34 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -33.86 353.21 -7.32 -41.18 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.87 Total: 7.00 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.92 Total: -2.31 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.23 Total: -32.82 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.04 Total: -33.65 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.04 Total: 15.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.86 -7.32 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491340350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.442 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds