Wall clock time and date at job start Tue Mar 31 2020 11:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00113 * 2 1 4 4 O 1.20818 * 119.99661 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99832 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46635 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47001 * 179.97438 * 6 5 3 8 8 C 1.53346 * 109.41904 * 295.13027 * 7 6 5 9 9 C 1.53195 * 109.14901 * 178.67276 * 8 7 6 10 10 N 1.46919 * 108.89273 * 54.57640 * 9 8 7 11 11 C 1.34778 * 120.63255 * 126.34238 * 10 9 8 12 12 O 1.21279 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00023 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.47124 * 179.97438 * 13 11 10 15 15 C 1.76202 * 100.00170 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99655 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47451 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47165 * 119.99882 * 19 17 15 22 22 H 1.48501 * 109.46985 * 240.00093 * 19 17 15 23 23 C 1.46933 * 118.74003 * 306.32349 * 10 9 8 24 24 C 1.53034 * 109.46014 * 174.99893 * 7 6 5 25 25 H 1.09000 * 109.47358 * 299.99512 * 1 2 3 26 26 H 1.09007 * 109.47116 * 59.99641 * 1 2 3 27 27 H 1.09000 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46903 * 60.00346 * 5 3 2 29 29 H 1.08999 * 109.46995 * 299.99963 * 5 3 2 30 30 H 1.09001 * 109.47533 * 60.00332 * 6 5 3 31 31 H 1.08997 * 109.47446 * 299.99998 * 6 5 3 32 32 H 1.09001 * 109.45799 * 55.03056 * 7 6 5 33 33 H 1.08997 * 109.68637 * 58.70485 * 8 7 6 34 34 H 1.09002 * 109.47277 * 298.50741 * 8 7 6 35 35 H 1.09002 * 109.58720 * 294.71670 * 9 8 7 36 36 H 1.08996 * 109.58651 * 174.43567 * 9 8 7 37 37 H 1.09001 * 109.47488 * 299.99559 * 13 11 10 38 38 H 1.09001 * 109.47269 * 59.99982 * 13 11 10 39 39 H 0.96996 * 119.99581 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.58580 * 173.39910 * 23 10 9 41 41 H 1.09006 * 109.57831 * 293.67403 * 23 10 9 42 42 H 1.08994 * 109.50232 * 61.43679 * 24 7 6 43 43 H 1.09007 * 109.52628 * 301.35340 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 6 5.5280 2.8221 0.0023 8 6 6.0683 2.2353 1.3120 9 6 7.5992 2.2882 1.2926 10 7 8.0241 3.6694 1.0277 11 6 8.8863 4.2933 1.8548 12 8 9.3186 3.7145 2.8290 13 6 9.3131 5.7100 1.5692 14 16 10.4648 6.2633 2.8512 15 6 10.7910 7.8994 2.2842 16 1 10.3169 8.2637 1.3848 17 6 11.6565 8.7202 2.9939 18 7 12.2339 8.2763 4.0903 19 14 12.0017 10.4549 2.3931 20 1 11.2351 10.7090 1.1469 21 1 11.5914 11.4304 3.4348 22 1 13.4537 10.6042 2.1195 23 6 7.4918 4.3577 -0.1563 24 6 5.9620 4.2843 -0.1229 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9563 0.7806 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 3.6101 3.2360 0.8911 31 1 3.6107 3.2364 -0.8889 32 1 5.9221 2.2530 -0.8396 33 1 5.7412 1.2005 1.4132 34 1 5.6947 2.8193 2.1532 35 1 7.9775 1.6327 0.5082 36 1 7.9882 1.9650 2.2581 37 1 9.8036 5.7527 0.5967 38 1 8.4374 6.3591 1.5632 39 1 12.8385 8.8501 4.5865 40 1 7.8080 5.4007 -0.1456 41 1 7.8635 3.8724 -1.0588 42 1 5.5893 4.8490 0.7316 43 1 5.5574 4.7069 -1.0427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530999078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:09 Heat of formation + Delta-G solvation = -140.238450 kcal Electronic energy + Delta-G solvation = -23521.297293 eV Core-core repulsion = 19885.218713 eV Total energy + Delta-G solvation = -3636.078580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88492 -39.94666 -37.81229 -36.87527 -34.69921 -32.42323 -31.66258 -31.40970 -29.02011 -28.17923 -26.06846 -25.46381 -23.33621 -22.96971 -21.10482 -20.49093 -19.06629 -18.01306 -17.65416 -17.05001 -16.91378 -16.59496 -15.61128 -15.41322 -15.05995 -14.79989 -14.41289 -14.25508 -14.08047 -13.91950 -13.58262 -13.31195 -13.15431 -12.87571 -12.67753 -12.58690 -12.29283 -12.12090 -11.88165 -11.50196 -11.37466 -11.22772 -11.08263 -11.06291 -11.00693 -10.87099 -10.74546 -10.66469 -10.51553 -9.78318 -9.32132 -9.06860 -8.49316 -8.20905 -6.49196 -6.21146 -3.91494 1.81853 2.31305 2.96450 3.07935 3.21942 3.27067 3.31758 3.61919 4.20562 4.25648 4.32036 4.42766 4.59558 4.67510 4.72264 4.77902 4.84458 4.96448 4.99588 5.08550 5.13934 5.14099 5.18117 5.25102 5.36055 5.48011 5.57268 5.61715 5.64217 5.72342 5.77792 5.84838 5.89392 5.92378 5.98965 6.01848 6.13024 6.21287 6.68719 7.34619 7.58741 7.60951 8.36018 8.58995 9.24298 10.86349 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.030251 B = 0.002151 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.378639 B =13012.244898 C =13475.950271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.507 6.507 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.086 4.086 8 C -0.133 4.133 9 C 0.112 3.888 10 N -0.620 5.620 11 C 0.535 3.465 12 O -0.518 6.518 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.108 3.892 24 C -0.130 4.130 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 -16.327 -12.371 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.394 6.394 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.104 4.104 8 C -0.171 4.171 9 C -0.010 4.010 10 N -0.357 5.357 11 C 0.323 3.677 12 O -0.393 6.393 13 C -0.301 4.301 14 S 0.164 5.836 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.015 4.015 24 C -0.168 4.168 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.844 -16.848 -10.766 28.170 hybrid contribution -0.609 1.831 -1.577 2.492 sum -20.453 -15.017 -12.343 28.217 Atomic orbital electron populations 1.23268 0.76312 1.03719 1.02605 1.86515 1.23529 1.33746 1.84174 1.23987 0.92485 0.81230 0.72143 1.90686 1.67349 1.36356 1.45041 1.21533 0.86909 1.00733 1.06109 1.21501 0.95289 0.93336 1.04014 1.21213 0.94013 0.96853 0.98365 1.22129 0.95762 1.01347 0.97887 1.21489 0.93792 0.82871 1.02891 1.48104 1.46525 1.14309 1.26715 1.20326 0.77569 0.87949 0.81865 1.90685 1.54171 1.66835 1.27598 1.23552 1.04954 0.94931 1.06661 1.85404 1.53072 1.14971 1.30114 1.22903 1.32464 0.98923 1.13956 0.90895 1.24995 0.94955 0.99030 0.94640 1.70029 1.28244 1.36652 1.15340 0.86118 0.78201 0.82459 0.78724 1.19612 1.20577 1.20574 1.21707 0.93347 0.98670 0.87808 1.21961 0.95613 0.96237 1.03012 0.91844 0.91906 0.88075 0.87536 0.87296 0.90769 0.90817 0.90627 0.90734 0.91174 0.91947 0.88924 0.89306 0.89293 0.92249 0.89192 0.91531 0.91062 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.86 10.56 -39.27 -0.41 -3.28 16 3 C 0.46 3.96 7.96 36.01 0.29 4.25 16 4 O -0.51 -5.94 15.73 -18.74 -0.29 -6.23 16 5 C -0.12 -0.68 5.57 -27.88 -0.16 -0.84 16 6 C -0.10 -0.74 3.97 -26.73 -0.11 -0.84 16 7 C -0.09 -0.62 2.15 -90.42 -0.19 -0.82 16 8 C -0.13 -1.13 5.16 -26.45 -0.14 -1.27 16 9 C 0.11 1.28 6.42 -3.71 -0.02 1.26 16 10 N -0.62 -8.63 2.97 -172.77 -0.51 -9.14 16 11 C 0.53 10.21 7.72 -10.99 -0.08 10.12 16 12 O -0.52 -11.91 15.27 5.56 0.08 -11.82 16 13 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 14 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 15 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 16 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 19 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 24 C -0.13 -1.12 5.36 -26.62 -0.14 -1.26 16 25 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.11 0.52 6.53 -51.93 -0.34 0.18 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 37 H 0.09 1.68 7.94 -51.92 -0.41 1.26 16 38 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -36.22 365.26 -8.06 -44.28 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.77 Total: -3.43 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.85 Total: -2.89 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.22 Total: -34.64 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.62 Total: -21.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.22 -8.06 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530999078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.955 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds