Wall clock time and date at job start Tue Mar 31 2020 11:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00113 * 2 1 4 4 O 1.20818 * 119.99661 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99832 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46635 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47001 * 179.97438 * 6 5 3 8 8 C 1.53346 * 109.41904 * 295.13027 * 7 6 5 9 9 C 1.53195 * 109.14901 * 178.67276 * 8 7 6 10 10 N 1.46919 * 108.89273 * 54.57640 * 9 8 7 11 11 C 1.34778 * 120.63255 * 126.34238 * 10 9 8 12 12 O 1.21279 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00023 * 179.97438 * 11 10 9 14 14 S 1.81004 * 109.47124 * 179.97438 * 13 11 10 15 15 C 1.76202 * 100.00170 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31629 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99655 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47451 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47165 * 119.99882 * 19 17 15 22 22 H 1.48501 * 109.46985 * 240.00093 * 19 17 15 23 23 C 1.46933 * 118.74003 * 306.32349 * 10 9 8 24 24 C 1.53034 * 109.46014 * 174.99893 * 7 6 5 25 25 H 1.09000 * 109.47358 * 299.99512 * 1 2 3 26 26 H 1.09007 * 109.47116 * 59.99641 * 1 2 3 27 27 H 1.09000 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46903 * 60.00346 * 5 3 2 29 29 H 1.08999 * 109.46995 * 299.99963 * 5 3 2 30 30 H 1.09001 * 109.47533 * 60.00332 * 6 5 3 31 31 H 1.08997 * 109.47446 * 299.99998 * 6 5 3 32 32 H 1.09001 * 109.45799 * 55.03056 * 7 6 5 33 33 H 1.08997 * 109.68637 * 58.70485 * 8 7 6 34 34 H 1.09002 * 109.47277 * 298.50741 * 8 7 6 35 35 H 1.09002 * 109.58720 * 294.71670 * 9 8 7 36 36 H 1.08996 * 109.58651 * 174.43567 * 9 8 7 37 37 H 1.09001 * 109.47488 * 299.99559 * 13 11 10 38 38 H 1.09001 * 109.47269 * 59.99982 * 13 11 10 39 39 H 0.96996 * 119.99581 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.58580 * 173.39910 * 23 10 9 41 41 H 1.09006 * 109.57831 * 293.67403 * 23 10 9 42 42 H 1.08994 * 109.50232 * 61.43679 * 24 7 6 43 43 H 1.09007 * 109.52628 * 301.35340 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 6 5.5280 2.8221 0.0023 8 6 6.0683 2.2353 1.3120 9 6 7.5992 2.2882 1.2926 10 7 8.0241 3.6694 1.0277 11 6 8.8863 4.2933 1.8548 12 8 9.3186 3.7145 2.8290 13 6 9.3131 5.7100 1.5692 14 16 10.4648 6.2633 2.8512 15 6 10.7910 7.8994 2.2842 16 1 10.3169 8.2637 1.3848 17 6 11.6565 8.7202 2.9939 18 7 12.2339 8.2763 4.0903 19 14 12.0017 10.4549 2.3931 20 1 11.2351 10.7090 1.1469 21 1 11.5914 11.4304 3.4348 22 1 13.4537 10.6042 2.1195 23 6 7.4918 4.3577 -0.1563 24 6 5.9620 4.2843 -0.1229 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9563 0.7806 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 3.6101 3.2360 0.8911 31 1 3.6107 3.2364 -0.8889 32 1 5.9221 2.2530 -0.8396 33 1 5.7412 1.2005 1.4132 34 1 5.6947 2.8193 2.1532 35 1 7.9775 1.6327 0.5082 36 1 7.9882 1.9650 2.2581 37 1 9.8036 5.7527 0.5967 38 1 8.4374 6.3591 1.5632 39 1 12.8385 8.8501 4.5865 40 1 7.8080 5.4007 -0.1456 41 1 7.8635 3.8724 -1.0588 42 1 5.5893 4.8490 0.7316 43 1 5.5574 4.7069 -1.0427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530999078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:09 Heat of formation + Delta-G solvation = -163.307693 kcal Electronic energy + Delta-G solvation = -23522.297650 eV Core-core repulsion = 19885.218713 eV Total energy + Delta-G solvation = -3637.078938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53843 -41.09913 -38.85031 -37.57885 -35.65399 -34.59028 -32.64623 -32.19188 -30.32509 -28.81247 -27.68599 -26.76330 -24.18602 -23.79878 -21.87745 -21.18340 -20.31841 -19.50231 -18.62134 -18.07325 -17.64479 -17.45847 -16.92183 -16.85571 -16.63752 -15.91540 -15.65033 -15.06940 -14.96458 -14.87503 -14.57485 -14.46792 -14.31888 -14.00231 -13.70004 -13.45684 -13.23031 -13.16193 -12.99634 -12.91683 -12.71763 -12.58719 -12.16397 -12.10618 -11.82868 -11.78127 -11.68886 -11.52598 -11.40098 -11.21664 -11.16308 -10.79772 -10.26058 -9.63083 -8.67852 -8.35169 -6.13547 1.19507 1.26209 1.41190 1.46269 1.57545 1.59321 1.81431 2.15459 2.27179 2.98967 3.25783 3.65482 3.68702 3.74301 3.87898 3.95322 4.15385 4.24350 4.26104 4.28562 4.32376 4.33340 4.43753 4.44687 4.52964 4.61742 4.64067 4.72392 4.86162 4.90757 4.94680 4.98872 5.07455 5.16025 5.21265 5.29782 5.41503 5.44011 5.56476 5.66054 6.19574 6.32773 6.73741 7.06054 7.17329 8.74398 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.030251 B = 0.002151 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.378639 B =13012.244898 C =13475.950271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.456 3.544 4 O -0.546 6.546 5 C -0.111 4.111 6 C -0.097 4.097 7 C -0.077 4.077 8 C -0.126 4.126 9 C 0.106 3.894 10 N -0.607 5.607 11 C 0.530 3.470 12 O -0.570 6.570 13 C -0.123 4.123 14 S -0.154 6.154 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.100 3.900 24 C -0.128 4.128 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.271 0.729 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.590 -16.883 -15.316 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.302 3.698 4 O -0.436 6.436 5 C -0.148 4.148 6 C -0.135 4.135 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.015 4.015 10 N -0.341 5.341 11 C 0.318 3.682 12 O -0.449 6.449 13 C -0.274 4.274 14 S 0.073 5.927 15 C -0.693 4.693 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.022 4.022 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.095 -17.440 -13.760 30.635 hybrid contribution -0.366 1.876 -0.725 2.044 sum -21.460 -15.564 -14.485 30.210 Atomic orbital electron populations 1.23495 0.75291 1.05532 1.02266 1.86513 1.24669 1.33368 1.83782 1.24564 0.93538 0.80820 0.70898 1.90673 1.68388 1.37554 1.47032 1.21619 0.84963 1.00086 1.08125 1.21379 0.94948 0.94198 1.02954 1.21168 0.93944 0.96031 0.98344 1.22108 0.93293 1.03017 0.98002 1.21746 0.95829 0.81470 1.02500 1.48156 1.44396 1.15218 1.26324 1.20116 0.78522 0.87430 0.82131 1.90665 1.56602 1.67654 1.29958 1.23370 1.03467 0.96260 1.04346 1.85583 1.56149 1.16197 1.34752 1.23227 1.32758 0.98969 1.14312 0.89924 1.26145 0.94449 1.04017 0.94602 1.70193 1.29080 1.38622 1.16883 0.84893 0.78309 0.76019 0.78647 1.17956 1.19970 1.19848 1.22039 0.94702 0.98340 0.87136 1.21959 0.93937 0.97308 1.03358 0.92428 0.92077 0.85232 0.84678 0.85797 0.92924 0.90955 0.87903 0.87718 0.93409 0.89060 0.91712 0.87457 0.87821 0.91989 0.89903 0.88574 0.93070 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.11 10.56 -51.45 -0.54 -5.65 16 3 C 0.46 7.12 7.96 71.24 0.57 7.69 16 4 O -0.55 -12.48 15.73 21.99 0.35 -12.14 16 5 C -0.11 -0.95 5.57 29.85 0.17 -0.78 16 6 C -0.10 -1.13 3.97 30.60 0.12 -1.01 16 7 C -0.08 -0.84 2.15 -10.66 -0.02 -0.86 16 8 C -0.13 -1.84 5.16 30.78 0.16 -1.68 16 9 C 0.11 2.24 6.42 86.36 0.55 2.79 16 10 N -0.61 -16.06 2.97 -818.91 -2.43 -18.50 16 11 C 0.53 20.44 7.72 87.66 0.68 21.12 16 12 O -0.57 -27.27 15.27 -3.03 -0.05 -27.31 16 13 C -0.12 -5.05 4.50 71.24 0.32 -4.73 16 14 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 15 C -0.54 -31.45 9.50 67.96 0.65 -30.80 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.72 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 19 Si 1.00 43.88 29.55 68.60 2.03 45.90 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.10 1.82 6.34 86.36 0.55 2.37 16 24 C -0.13 -1.84 5.36 30.67 0.16 -1.67 16 25 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 26 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 27 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.12 0.72 6.53 -2.39 -0.02 0.71 16 30 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.93 6.52 -2.39 -0.02 0.91 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.76 7.00 -2.39 -0.02 1.75 16 37 H 0.11 3.96 7.94 -2.39 -0.02 3.94 16 38 H 0.10 3.90 7.69 -2.40 -0.02 3.88 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.08 1.65 5.93 -2.39 -0.01 1.63 16 41 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -83.35 365.26 5.03 -78.32 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.99 Total: 10.36 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.56 Total: -4.92 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.15 Total: -74.68 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.24 Total: -45.10 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -83.35 5.03 -78.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530999078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.984 kcal (2) G-P(sol) polarization free energy of solvation -83.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds