Wall clock time and date at job start Tue Mar 31 2020 11:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57566 * 2 1 4 4 O 1.42100 * 108.57639 * 228.97409 * 2 1 3 5 5 C 1.81407 * 101.92025 * 114.48872 * 2 1 3 6 6 C 1.50705 * 115.54838 * 295.06291 * 5 2 1 7 7 O 1.21281 * 119.99727 * 107.33727 * 6 5 2 8 8 N 1.34772 * 119.99876 * 287.06282 * 6 5 2 9 9 C 1.46926 * 120.63500 * 354.81510 * 8 6 5 10 10 C 1.52755 * 109.01373 * 233.58856 * 9 8 6 11 11 C 1.53048 * 109.38258 * 305.58847 * 10 9 8 12 12 C 1.52996 * 109.46251 * 181.25782 * 11 10 9 13 13 C 1.50705 * 109.47005 * 64.92988 * 12 11 10 14 14 H 1.08001 * 119.99659 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99910 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99699 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47161 * 90.00249 * 17 15 13 19 19 H 1.48504 * 109.46999 * 210.00367 * 17 15 13 20 20 H 1.48501 * 109.47212 * 330.00221 * 17 15 13 21 21 C 1.53040 * 109.53664 * 61.23460 * 11 10 9 22 22 C 1.46931 * 120.62983 * 175.09761 * 8 6 5 23 23 C 1.52991 * 117.51845 * 80.76463 * 5 2 1 24 24 C 1.52989 * 117.49627 * 149.39740 * 5 2 1 25 25 H 1.08997 * 109.47200 * 310.76637 * 1 2 3 26 26 H 1.08997 * 109.46946 * 70.76962 * 1 2 3 27 27 H 1.09007 * 109.46850 * 190.77219 * 1 2 3 28 28 H 1.09007 * 109.58473 * 353.42593 * 9 8 6 29 29 H 1.08996 * 109.58556 * 113.84526 * 9 8 6 30 30 H 1.08995 * 109.56946 * 185.55054 * 10 9 8 31 31 H 1.09000 * 109.36351 * 65.49300 * 10 9 8 32 32 H 1.09005 * 109.45777 * 301.21834 * 11 10 9 33 33 H 1.08997 * 109.47445 * 184.92945 * 12 11 10 34 34 H 1.09003 * 109.46934 * 304.93212 * 12 11 10 35 35 H 0.97001 * 119.99631 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.49475 * 178.68372 * 21 11 10 37 37 H 1.09003 * 109.49642 * 58.59439 * 21 11 10 38 38 H 1.09000 * 109.58617 * 246.15235 * 22 8 6 39 39 H 1.08998 * 109.58512 * 6.58044 * 22 8 6 40 40 H 1.09002 * 117.49761 * 214.97130 * 23 5 2 41 41 H 1.09004 * 117.50243 * 359.97438 * 23 5 2 42 42 H 1.09000 * 117.50288 * 359.96940 * 24 5 2 43 43 H 1.09007 * 117.50190 * 144.99774 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 6 1.7594 0.0722 2.8128 7 8 0.8123 -0.2879 3.4793 8 7 2.4314 1.1919 3.1463 9 6 3.6508 1.5768 2.4227 10 6 4.7795 1.7928 3.4291 11 6 4.3303 2.8036 4.4868 12 6 5.4706 3.0450 5.4779 13 6 6.6261 3.6986 4.7647 14 1 6.5545 3.9193 3.7099 15 6 7.7752 4.0139 5.4586 16 7 8.7833 4.5847 4.8363 17 14 7.8992 3.6314 7.2828 18 1 8.4596 2.2685 7.4658 19 1 8.7885 4.6244 7.9374 20 1 6.5481 3.6974 7.8954 21 6 3.1126 2.2554 5.2342 22 6 1.9619 2.0476 4.2445 23 6 2.1217 -2.2598 1.7305 24 6 3.4775 -1.5509 1.7383 25 1 -0.3633 0.6710 0.7783 26 1 -0.3633 0.3385 -0.9703 27 1 -0.3633 -1.0096 0.1921 28 1 3.9291 0.7841 1.7281 29 1 3.4731 2.5011 1.8731 30 1 5.6608 2.1735 2.9131 31 1 5.0204 0.8451 3.9108 32 1 4.0659 3.7434 4.0018 33 1 5.1232 3.6964 6.2798 34 1 5.7946 2.0928 5.8979 35 1 9.5915 4.8068 5.3245 36 1 2.8076 2.9654 6.0029 37 1 3.3692 1.3034 5.6989 38 1 1.6437 3.0112 3.8465 39 1 1.1262 1.5655 4.7518 40 1 1.7670 -2.6782 2.6725 41 1 1.8519 -2.8209 0.8357 42 1 4.1000 -1.6456 0.8486 43 1 4.0150 -1.5030 2.6854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565020163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:33 Heat of formation + Delta-G solvation = -80.127069 kcal Electronic energy + Delta-G solvation = -25671.391867 eV Core-core repulsion = 22037.919912 eV Total energy + Delta-G solvation = -3633.471955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51809 -37.95070 -37.37452 -36.60043 -36.30722 -34.11004 -32.17842 -30.89997 -29.90560 -28.72127 -25.84401 -24.04512 -23.22216 -22.73878 -21.66464 -20.26318 -19.38721 -18.52904 -18.00737 -16.79254 -16.57425 -16.41753 -16.25520 -15.68302 -14.99439 -14.68058 -14.37510 -13.99800 -13.73206 -13.54271 -13.51466 -13.38341 -13.24301 -12.90399 -12.47476 -12.34818 -12.31999 -12.18323 -12.10838 -12.04050 -11.59694 -11.46103 -11.23177 -11.15976 -10.90703 -10.74760 -10.65917 -10.35797 -10.00530 -9.89982 -9.67240 -9.50774 -9.07622 -8.54921 -8.52444 -6.05317 -4.02851 -0.40597 2.07619 2.50776 2.64705 2.92973 3.28761 3.34835 3.37012 3.40099 3.71696 4.08675 4.16295 4.25817 4.43857 4.48822 4.68526 4.93414 5.08924 5.11708 5.25678 5.27626 5.33899 5.35188 5.38451 5.48999 5.58507 5.59262 5.77770 5.87827 6.00766 6.21450 6.26719 6.40000 6.52027 6.76475 6.82490 6.93621 7.24483 7.33783 7.41028 7.78375 7.96388 8.52643 8.99774 9.57673 11.07881 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.003670 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.321713 B = 7627.207442 C = 7992.876751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.457 3.543 3 O -0.916 6.916 4 O -0.929 6.929 5 C -0.676 4.676 6 C 0.564 3.436 7 O -0.536 6.536 8 N -0.589 5.589 9 C 0.103 3.897 10 C -0.122 4.122 11 C -0.074 4.074 12 C -0.009 4.009 13 C -0.517 4.517 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.131 4.131 22 C 0.110 3.890 23 C -0.096 4.096 24 C -0.105 4.105 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 -12.473 -8.144 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.635 3.365 3 O -0.913 6.913 4 O -0.926 6.926 5 C -0.765 4.765 6 C 0.348 3.652 7 O -0.414 6.414 8 N -0.320 5.320 9 C -0.019 4.019 10 C -0.160 4.160 11 C -0.092 4.092 12 C -0.046 4.046 13 C -0.555 4.555 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.170 4.170 22 C -0.011 4.011 23 C -0.134 4.134 24 C -0.143 4.143 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.549 -12.268 -8.382 22.240 hybrid contribution -0.243 -0.279 1.631 1.672 sum -16.792 -12.547 -6.751 22.022 Atomic orbital electron populations 1.30155 1.25684 1.12150 1.11719 1.06980 0.78798 0.75622 0.75127 1.93649 1.79076 1.33161 1.85434 1.93604 1.79761 1.67651 1.51634 1.31942 1.17581 1.06573 1.20394 1.18324 0.82844 0.80368 0.83637 1.90676 1.29257 1.69153 1.52298 1.48109 1.26493 1.23202 1.34225 1.22024 0.83717 1.01675 0.94467 1.21877 0.97463 0.99749 0.96872 1.21032 0.94408 0.97465 0.96319 1.19612 0.93895 0.96211 0.94864 1.21144 0.97642 1.39021 0.97649 0.90734 1.25022 0.95731 0.94696 0.97998 1.69912 1.05328 1.42590 1.36398 0.86820 0.78237 0.78155 0.86276 1.20454 1.21486 1.19116 1.22060 0.95593 1.01621 0.97682 1.21773 0.97882 0.93902 0.87570 1.22944 0.99117 0.85337 1.06035 1.23051 0.88773 0.96154 1.06338 0.85085 0.85015 0.84982 0.91112 0.89467 0.88801 0.92519 0.91406 0.96590 0.97196 0.92793 0.90890 0.92070 0.90980 0.89433 0.86274 0.86117 0.85913 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.49 10.56 101.05 1.07 -3.43 16 2 S 2.46 24.27 5.25 -107.50 -0.56 23.70 16 3 O -0.92 -11.88 15.51 -57.83 -0.90 -12.78 16 4 O -0.93 -10.76 17.75 -57.83 -1.03 -11.79 16 5 C -0.68 -6.88 1.05 -91.78 -0.10 -6.98 16 6 C 0.56 7.46 6.84 -10.99 -0.08 7.39 16 7 O -0.54 -8.25 16.30 5.56 0.09 -8.16 16 8 N -0.59 -8.23 2.98 -173.03 -0.52 -8.74 16 9 C 0.10 1.49 4.67 -3.94 -0.02 1.47 16 10 C -0.12 -2.06 5.17 -26.83 -0.14 -2.20 16 11 C -0.07 -1.35 2.10 -90.58 -0.19 -1.54 16 12 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 13 C -0.52 -14.01 8.94 -34.44 -0.31 -14.32 16 14 H 0.07 2.16 7.30 -52.49 -0.38 1.77 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 17 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 22 C 0.11 1.52 6.44 -3.71 -0.02 1.50 16 23 C -0.10 -0.75 9.71 -26.74 -0.26 -1.01 16 24 C -0.11 -0.92 8.41 -26.74 -0.22 -1.14 16 25 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.13 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.89 4.68 -51.93 -0.24 0.65 16 29 H 0.09 1.31 7.74 -51.93 -0.40 0.91 16 30 H 0.09 1.77 6.91 -51.93 -0.36 1.41 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 40 H 0.12 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.12 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -34.65 352.59 -8.86 -43.50 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.75 Total: -0.33 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.61 Total: -20.91 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.26 Total: -35.28 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.83 Total: -32.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 24.27 SS G_CDS: -0.56 Total: 23.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.65 -8.86 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565020163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.623 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds