Wall clock time and date at job start Tue Mar 31 2020 10:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99889 * 2 1 4 4 N 1.46502 * 109.46847 * 125.00276 * 3 2 1 5 5 C 1.46502 * 119.99986 * 263.18920 * 4 3 2 6 6 C 1.50701 * 109.47349 * 269.99920 * 5 4 3 7 7 H 1.08003 * 119.99188 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00350 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99716 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00036 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47235 * 59.99842 * 10 8 6 12 12 H 1.48503 * 109.47040 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47167 * 299.99801 * 10 8 6 14 14 C 1.34775 * 119.99938 * 83.18728 * 4 3 2 15 15 O 1.21661 * 119.99800 * 183.77234 * 14 4 3 16 16 C 1.46990 * 120.00279 * 3.77873 * 14 4 3 17 17 C 1.35810 * 125.14876 * 173.42644 * 16 14 4 18 18 C 1.46243 * 106.08944 * 179.97438 * 17 16 14 19 19 C 1.39819 * 134.14853 * 179.97438 * 18 17 16 20 20 C 1.36594 * 119.81533 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.49500 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.67386 * 0.02562 * 21 20 19 23 23 O 1.35965 * 120.11599 * 179.72374 * 22 21 20 24 24 C 1.42903 * 117.00127 * 359.97438 * 23 22 21 25 25 C 1.39486 * 119.76145 * 359.97438 * 22 21 20 26 26 O 1.34774 * 133.23889 * 180.02562 * 25 22 21 27 27 H 1.08002 * 120.00225 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00176 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99869 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46986 * 5.00754 * 3 2 1 31 31 H 1.08993 * 109.47066 * 245.00163 * 3 2 1 32 32 H 1.09002 * 109.47402 * 30.00263 * 5 4 3 33 33 H 1.09001 * 109.47216 * 149.99986 * 5 4 3 34 34 H 0.97000 * 119.99490 * 180.02562 * 9 8 6 35 35 H 1.08001 * 126.95545 * 359.97438 * 17 16 14 36 36 H 1.08003 * 120.09239 * 0.07015 * 19 18 17 37 37 H 1.07994 * 119.75695 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.66430 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47530 * 59.99889 * 24 23 22 40 40 H 1.09003 * 109.47046 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.47088 * 299.99663 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6113 1.9984 2.3787 6 6 3.0311 3.4448 2.3246 7 1 3.5323 3.8290 1.4485 8 6 2.7753 4.2773 3.3934 9 7 2.1645 3.8093 4.4600 10 14 3.2951 6.0702 3.3260 11 1 2.6230 6.7378 2.1824 12 1 2.9075 6.7458 4.5904 13 1 4.7675 6.1525 3.1515 14 6 4.2015 0.7432 1.0248 15 8 4.9467 0.7054 1.9858 16 6 4.6185 0.1471 -0.2524 17 6 5.8520 -0.3570 -0.5142 18 6 5.8088 -0.8378 -1.8947 19 6 6.7372 -1.4500 -2.7422 20 6 6.3756 -1.7861 -4.0158 21 6 5.0922 -1.5250 -4.4759 22 6 4.1583 -0.9207 -3.6554 23 8 2.9062 -0.6651 -4.1196 24 6 2.6232 -1.0473 -5.4671 25 6 4.5067 -0.5692 -2.3513 26 8 3.8328 0.0161 -1.3415 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 1.5304 1.9383 2.5061 33 1 3.1039 1.5083 3.2185 34 1 1.9843 4.3952 5.2118 35 1 6.6945 -0.3952 0.1606 36 1 7.7371 -1.6572 -2.3906 37 1 7.0935 -2.2586 -4.6698 38 1 4.8209 -1.7960 -5.4855 39 1 2.7622 -2.1229 -5.5766 40 1 1.5928 -0.7872 -5.7099 41 1 3.2987 -0.5230 -6.1430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:41 Heat of formation + Delta-G solvation = -6.820496 kcal Electronic energy + Delta-G solvation = -26073.531467 eV Core-core repulsion = 22307.794372 eV Total energy + Delta-G solvation = -3765.737095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48950 -39.75295 -38.80251 -37.04702 -35.80468 -33.23136 -32.34955 -32.09418 -30.52152 -29.44229 -27.90129 -27.29643 -25.58536 -24.21116 -22.86390 -22.14775 -21.28369 -20.00790 -19.25249 -18.01901 -17.78186 -16.93535 -16.59531 -16.40826 -15.69992 -15.61456 -15.55068 -15.06552 -14.58194 -14.43411 -14.19606 -13.84804 -13.41047 -13.21373 -12.97068 -12.57568 -12.51537 -12.44589 -12.18680 -11.69496 -11.61506 -11.46923 -11.35766 -11.31483 -11.00008 -10.89583 -10.60290 -10.23126 -9.82744 -9.71211 -9.45220 -9.07876 -8.65424 -8.45237 -8.01662 -7.76180 -6.06833 -4.12427 0.63494 1.22098 1.97697 2.55133 2.56321 2.98913 3.32229 3.36244 3.39097 3.52413 3.65584 3.82751 4.41066 4.54659 4.58049 4.66379 4.81943 4.88185 4.99686 5.11365 5.15648 5.22447 5.27937 5.29036 5.34667 5.49963 5.60195 5.78571 5.92968 5.97068 6.14663 6.21255 6.31101 6.33675 6.43743 6.72536 6.90351 6.95347 7.06458 7.24805 7.35043 7.44854 7.88481 8.16957 8.20785 8.69844 8.93290 9.52598 11.01263 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003749 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.635766 B = 7466.952280 C = 8138.783096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.153 4.153 3 C 0.130 3.870 4 N -0.575 5.575 5 C 0.245 3.755 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.900 3.100 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.581 3.419 15 O -0.513 6.513 16 C 0.007 3.993 17 C -0.143 4.143 18 C -0.097 4.097 19 C -0.103 4.103 20 C -0.100 4.100 21 C -0.194 4.194 22 C 0.145 3.855 23 O -0.310 6.310 24 C 0.027 3.973 25 C 0.030 3.970 26 O -0.161 6.161 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.171 0.829 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 -12.212 -20.417 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.172 4.172 3 C 0.007 3.993 4 N -0.303 5.303 5 C 0.127 3.873 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.366 3.634 15 O -0.391 6.391 16 C -0.043 4.043 17 C -0.164 4.164 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.213 4.213 22 C 0.099 3.901 23 O -0.223 6.223 24 C -0.068 4.068 25 C -0.019 4.019 26 O -0.062 6.062 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.188 0.812 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.283 -11.952 -19.594 23.065 hybrid contribution 0.381 0.797 -0.331 0.944 sum 2.665 -11.154 -19.925 22.990 Atomic orbital electron populations 1.23756 0.95700 1.01623 1.01480 1.23304 0.96203 0.98703 0.99010 1.20856 0.93040 0.95634 0.89728 1.48248 1.13265 1.52096 1.16727 1.19446 0.96385 0.91867 0.79590 1.21382 1.39059 0.94193 1.02454 0.92302 1.24919 0.94937 0.99014 0.95019 1.69928 1.41256 1.36188 1.05756 0.86531 0.79231 0.84246 0.77281 1.20185 1.21117 1.20094 1.16798 0.83046 0.79396 0.84169 1.90861 1.52886 1.59431 1.35922 1.22778 0.90928 1.02902 0.87724 1.22646 0.97898 1.01617 0.94206 1.19750 0.93313 1.02371 0.94409 1.20243 0.99017 0.99759 0.93102 1.20479 0.95557 1.00203 0.95619 1.20923 0.94224 1.05998 1.00109 1.17728 0.85456 0.98086 0.88810 1.86196 1.27261 1.78421 1.30426 1.23091 1.02663 1.00118 0.80896 1.19005 0.91652 1.02297 0.88926 1.84493 1.38501 1.64578 1.18657 0.88833 0.88329 0.88017 0.88928 0.89303 0.94321 0.93346 0.92552 0.81197 0.85150 0.85156 0.84464 0.92553 0.88023 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 29.02 0.42 -2.29 16 2 C -0.15 -2.51 8.91 -36.02 -0.32 -2.83 16 3 C 0.13 2.40 5.45 -5.19 -0.03 2.38 16 4 N -0.57 -12.82 2.46 -177.86 -0.44 -13.26 16 5 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 6 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.58 12.91 7.58 -12.72 -0.10 12.81 16 15 O -0.51 -13.00 16.39 5.22 0.09 -12.91 16 16 C 0.01 0.14 6.71 -36.91 -0.25 -0.11 16 17 C -0.14 -2.30 10.81 -37.24 -0.40 -2.70 16 18 C -0.10 -1.40 6.38 -105.21 -0.67 -2.07 16 19 C -0.10 -1.14 10.06 -39.58 -0.40 -1.54 16 20 C -0.10 -0.94 9.97 -39.96 -0.40 -1.33 16 21 C -0.19 -1.90 9.03 -39.37 -0.36 -2.26 16 22 C 0.14 1.86 6.70 -39.12 -0.26 1.60 16 23 O -0.31 -3.79 10.50 -19.63 -0.21 -4.00 16 24 C 0.03 0.19 9.81 101.05 0.99 1.18 16 25 C 0.03 0.45 7.35 -38.24 -0.28 0.17 16 26 O -0.16 -2.76 6.22 2.67 0.02 -2.74 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 29 H 0.10 1.69 7.80 -52.49 -0.41 1.28 16 30 H 0.09 1.70 7.67 -51.93 -0.40 1.30 16 31 H 0.09 1.59 5.41 -51.93 -0.28 1.31 16 32 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.05 1.42 7.37 -51.93 -0.38 1.03 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.14 0.92 6.26 -52.49 -0.33 0.59 16 39 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -33.15 355.04 -7.06 -40.21 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.09 Total: 0.45 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.50 Total: -4.25 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.30 Total: -38.91 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.10 Total: -19.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.15 -7.06 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.390 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds