Wall clock time and date at job start Tue Mar 31 2020 11:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42102 * 108.57764 * 2 1 4 4 O 1.42098 * 108.58288 * 228.97455 * 2 1 3 5 5 C 1.81400 * 101.92179 * 114.48485 * 2 1 3 6 6 C 1.50697 * 112.85043 * 305.67807 * 5 2 1 7 7 O 1.21284 * 119.99991 * 106.65274 * 6 5 2 8 8 N 1.34779 * 119.99889 * 286.65027 * 6 5 2 9 9 C 1.46928 * 120.62935 * 355.61913 * 8 6 5 10 10 C 1.53190 * 108.77372 * 126.11888 * 9 8 6 11 11 C 1.53042 * 109.31568 * 54.62950 * 10 9 8 12 12 C 1.53036 * 109.53933 * 298.63899 * 11 10 9 13 13 H 1.08999 * 109.49932 * 301.40836 * 12 11 10 14 14 C 1.50703 * 109.49703 * 181.35042 * 12 11 10 15 15 H 1.07999 * 119.99425 * 239.99974 * 14 12 11 16 16 C 1.37868 * 120.00328 * 59.99519 * 14 12 11 17 17 N 1.31516 * 120.00150 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00306 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47195 * 90.00071 * 18 16 14 20 20 H 1.48495 * 109.47597 * 210.00129 * 18 16 14 21 21 H 1.48500 * 109.47006 * 330.00400 * 18 16 14 22 22 C 1.46929 * 120.62883 * 175.33756 * 8 6 5 23 23 C 1.53778 * 113.61226 * 76.87332 * 5 2 1 24 24 C 1.54047 * 86.98830 * 140.02062 * 23 5 2 25 25 C 1.53784 * 87.07687 * 334.56762 * 24 23 5 26 26 H 1.09008 * 109.47529 * 311.59987 * 1 2 3 27 27 H 1.09006 * 109.47529 * 71.60043 * 1 2 3 28 28 H 1.09000 * 109.47706 * 191.60214 * 1 2 3 29 29 H 1.08996 * 109.58273 * 245.89864 * 9 8 6 30 30 H 1.08996 * 109.58570 * 6.32530 * 9 8 6 31 31 H 1.09001 * 109.49882 * 174.58513 * 10 9 8 32 32 H 1.09006 * 109.49905 * 294.64761 * 10 9 8 33 33 H 1.09006 * 109.45287 * 58.65884 * 11 10 9 34 34 H 1.09005 * 109.46049 * 178.61574 * 11 10 9 35 35 H 0.97003 * 120.00317 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.58899 * 353.67579 * 22 8 6 37 37 H 1.09002 * 109.58207 * 114.09652 * 22 8 6 38 38 H 1.09007 * 113.61407 * 254.61668 * 23 5 2 39 39 H 1.09003 * 113.61870 * 25.51512 * 23 5 2 40 40 H 1.09004 * 113.61760 * 220.02289 * 24 23 5 41 41 H 1.08995 * 113.69311 * 89.12351 * 24 23 5 42 42 H 1.08998 * 113.61133 * 270.88236 * 25 24 23 43 43 H 1.08996 * 113.61451 * 139.97452 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 1.5171 -0.0156 2.7561 7 8 0.5710 -0.5231 3.3205 8 7 1.9678 1.1922 3.1494 9 6 3.1703 1.7770 2.5405 10 6 2.8280 3.1759 2.0185 11 6 2.2307 4.0083 3.1554 12 6 0.9415 3.3486 3.6502 13 1 0.2351 3.2656 2.8243 14 6 0.3366 4.1864 4.7471 15 1 0.1926 3.7653 5.7311 16 6 -0.0327 5.4905 4.4945 17 7 0.1433 6.0035 3.2964 18 14 -0.7818 6.5293 5.8543 19 1 0.2976 7.2387 6.5871 20 1 -1.7137 7.5224 5.2624 21 1 -1.5249 5.6525 6.7947 22 6 1.2624 1.9517 4.1907 23 6 2.0028 -2.2616 1.6552 24 6 3.2824 -2.3135 2.5113 25 6 3.6882 -0.9887 1.8440 26 1 -0.3634 0.6823 0.7685 27 1 -0.3634 0.3244 -0.9752 28 1 -0.3634 -1.0066 0.2067 29 1 3.9601 1.8492 3.2881 30 1 3.5031 1.1497 1.7136 31 1 3.7334 3.6588 1.6509 32 1 2.1042 3.0946 1.2074 33 1 2.9459 4.0685 3.9758 34 1 2.0089 5.0121 2.7928 35 1 -0.1170 6.9209 3.1185 36 1 0.3365 1.4396 4.4527 37 1 1.8968 2.0380 5.0729 38 1 1.1061 -2.5785 2.1879 39 1 2.1091 -2.7401 0.6816 40 1 3.9402 -3.1466 2.2634 41 1 3.0972 -2.2244 3.5816 42 1 4.2544 -1.1198 0.9219 43 1 4.1513 -0.2786 2.5290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:51 Heat of formation + Delta-G solvation = -93.418445 kcal Electronic energy + Delta-G solvation = -26729.918096 eV Core-core repulsion = 23095.869783 eV Total energy + Delta-G solvation = -3634.048313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95145 -39.27632 -38.14216 -38.03584 -37.18038 -35.35890 -33.05624 -32.01613 -30.62801 -28.47115 -27.26439 -26.52787 -25.97612 -23.30958 -22.54845 -20.95213 -20.49943 -19.51518 -18.80452 -18.34951 -17.42449 -17.31391 -17.09796 -16.70014 -16.59407 -15.93900 -15.63214 -15.09057 -14.97017 -14.61551 -14.44448 -14.15831 -14.07339 -13.81221 -13.69541 -13.55713 -13.55436 -13.41197 -13.23351 -13.06180 -12.83687 -12.64709 -12.56607 -12.15620 -11.97352 -11.86739 -11.77958 -11.65980 -11.46944 -11.26206 -11.02873 -10.89208 -10.69835 -10.40227 -9.56524 -8.08390 -6.24131 -1.17195 1.25476 1.41879 1.43043 1.52774 1.68929 1.85916 2.40510 2.44639 2.66726 3.09143 3.18138 3.25734 3.31430 3.65942 3.93057 4.02394 4.09319 4.19356 4.33069 4.39663 4.53996 4.54823 4.60455 4.69246 4.79972 4.83331 4.85092 4.86245 4.94301 5.01784 5.04678 5.14383 5.29116 5.35862 5.52039 5.62077 5.69413 5.97182 6.15767 6.35242 6.39969 6.84858 6.98308 7.44189 8.95114 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.004596 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.664329 B = 6090.408858 C = 6409.615077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.433 3.567 3 O -0.942 6.942 4 O -0.942 6.942 5 C -0.606 4.606 6 C 0.546 3.454 7 O -0.560 6.560 8 N -0.595 5.595 9 C 0.104 3.896 10 C -0.128 4.128 11 C -0.108 4.108 12 C 0.039 3.961 13 H -0.008 1.008 14 C -0.536 4.536 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.111 4.111 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -15.866 -6.073 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.617 3.383 3 O -0.939 6.939 4 O -0.939 6.939 5 C -0.698 4.698 6 C 0.332 3.668 7 O -0.440 6.440 8 N -0.326 5.326 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.146 4.146 12 C 0.020 3.980 13 H 0.010 0.990 14 C -0.574 4.574 15 H 0.073 0.927 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.195 1.195 22 C 0.007 3.993 23 C -0.135 4.135 24 C -0.156 4.156 25 C -0.149 4.149 26 H 0.133 0.867 27 H 0.169 0.831 28 H 0.171 0.829 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.144 0.856 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.886 -15.653 -6.523 18.701 hybrid contribution -1.383 1.047 1.271 2.150 sum 6.503 -14.606 -5.252 16.828 Atomic orbital electron populations 1.30178 1.24357 1.13194 1.12575 1.07549 0.79407 0.75167 0.76220 1.93640 1.79958 1.34288 1.85979 1.93567 1.80291 1.67571 1.52444 1.31553 1.09953 1.10797 1.17487 1.19126 0.83111 0.80862 0.83679 1.90655 1.29840 1.66665 1.56794 1.48291 1.28340 1.17217 1.38716 1.22256 0.85905 0.95513 0.98123 1.21933 1.01487 0.94705 0.98480 1.21491 0.96162 1.00683 0.96272 1.18903 0.93832 0.90469 0.94766 0.98959 1.21418 1.41103 0.97543 0.97344 0.92660 1.25683 0.96010 0.98992 0.97529 1.70031 1.48192 1.15140 1.21858 0.85614 0.78417 0.78485 0.79463 1.19894 1.21116 1.19472 1.21701 0.96035 0.92326 0.89192 1.22888 1.01780 0.84864 1.03956 1.22767 0.96448 0.97339 0.99044 1.23148 0.86906 1.00242 1.04570 0.86665 0.83148 0.82877 0.89689 0.87929 0.90740 0.91591 0.94583 0.92044 0.92998 0.91719 0.91457 0.88961 0.85242 0.87280 0.90696 0.85553 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -14.35 10.18 113.37 1.15 -13.19 16 2 S 2.43 58.80 4.84 -56.49 -0.27 58.53 16 3 O -0.94 -28.84 12.86 -127.37 -1.64 -30.48 16 4 O -0.94 -23.77 17.36 -127.37 -2.21 -25.98 16 5 C -0.61 -14.01 0.49 -11.01 -0.01 -14.01 16 6 C 0.55 17.48 5.75 87.66 0.50 17.98 16 7 O -0.56 -21.09 15.49 -3.04 -0.05 -21.13 16 8 N -0.59 -20.85 2.97 -818.91 -2.43 -23.29 16 9 C 0.10 3.19 4.07 86.36 0.35 3.54 16 10 C -0.13 -4.84 5.54 30.67 0.17 -4.67 16 11 C -0.11 -5.00 4.96 30.62 0.15 -4.85 16 12 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 13 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 14 C -0.54 -29.21 8.57 25.60 0.22 -28.99 16 15 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.02 0.94 5.30 84.65 0.45 1.38 16 17 N -0.91 -52.48 11.31 21.44 0.24 -52.24 16 18 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.13 5.46 5.65 86.36 0.49 5.95 16 23 C -0.10 -1.71 7.13 31.21 0.22 -1.49 16 24 C -0.12 -1.84 7.81 31.21 0.24 -1.60 16 25 C -0.11 -1.92 5.80 31.12 0.18 -1.74 16 26 H 0.11 3.10 7.96 -2.39 -0.02 3.08 16 27 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.10 2.62 3.06 -2.39 -0.01 2.62 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.07 2.76 6.20 -2.38 -0.01 2.75 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 3.28 6.04 -2.38 -0.01 3.26 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.06 2.90 7.03 -2.39 -0.02 2.88 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.09 1.81 7.38 -2.38 -0.02 1.79 16 39 H 0.13 1.70 7.50 -2.39 -0.02 1.68 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 1.62 8.10 -2.39 -0.02 1.60 16 43 H 0.10 1.72 5.93 -2.39 -0.01 1.71 16 Total: -1.00 -70.39 337.72 0.78 -69.61 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.01 Total: 19.35 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.10 Total: -39.74 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -2.19 Total: -75.52 kcal Atomic # 8 Polarization: -73.70 SS G_CDS: -3.90 Total: -77.59 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 58.80 SS G_CDS: -0.27 Total: 58.53 kcal Total: -70.39 0.78 -69.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.813 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds