Wall clock time and date at job start Tue Mar 31 2020 11:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 108.57707 * 2 1 4 4 O 1.42099 * 108.58072 * 228.97445 * 2 1 3 5 5 C 1.81402 * 101.92127 * 114.48562 * 2 1 3 6 6 C 1.50698 * 112.84994 * 294.01045 * 5 2 1 7 7 O 1.21276 * 119.99630 * 106.92542 * 6 5 2 8 8 N 1.34773 * 120.00153 * 286.92578 * 6 5 2 9 9 C 1.46922 * 120.63465 * 4.32081 * 8 6 5 10 10 C 1.52761 * 109.00996 * 233.58791 * 9 8 6 11 11 C 1.53042 * 109.38021 * 305.58542 * 10 9 8 12 12 C 1.53039 * 109.54156 * 61.24108 * 11 10 9 13 13 H 1.09000 * 109.49592 * 58.58144 * 12 11 10 14 14 C 1.50694 * 109.50075 * 178.68593 * 12 11 10 15 15 H 1.07997 * 120.00085 * 119.83623 * 14 12 11 16 16 C 1.37883 * 119.99760 * 299.83721 * 14 12 11 17 17 N 1.31516 * 120.00086 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99731 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46772 * 89.99932 * 18 16 14 20 20 H 1.48498 * 109.46623 * 209.99468 * 18 16 14 21 21 H 1.48491 * 109.47051 * 330.00047 * 18 16 14 22 22 C 1.46928 * 120.62751 * 184.59933 * 8 6 5 23 23 C 1.53781 * 113.69182 * 65.28413 * 5 2 1 24 24 C 1.53778 * 87.08201 * 139.98967 * 23 5 2 25 25 C 1.53785 * 87.08393 * 334.56710 * 24 23 5 26 26 H 1.08994 * 109.47187 * 306.64379 * 1 2 3 27 27 H 1.09001 * 109.47022 * 66.64699 * 1 2 3 28 28 H 1.09004 * 109.46683 * 186.64149 * 1 2 3 29 29 H 1.09000 * 109.58382 * 353.41341 * 9 8 6 30 30 H 1.08993 * 109.59282 * 113.84491 * 9 8 6 31 31 H 1.09003 * 109.56943 * 185.54987 * 10 9 8 32 32 H 1.09003 * 109.36511 * 65.49457 * 10 9 8 33 33 H 1.09004 * 109.45828 * 301.21902 * 11 10 9 34 34 H 1.09005 * 109.45893 * 181.26428 * 11 10 9 35 35 H 0.96995 * 119.99769 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.58634 * 246.15246 * 22 8 6 37 37 H 1.08995 * 109.58781 * 6.43988 * 22 8 6 38 38 H 1.08996 * 113.61104 * 254.54119 * 23 5 2 39 39 H 1.09004 * 113.61196 * 25.44353 * 23 5 2 40 40 H 1.08999 * 113.61721 * 220.01793 * 24 23 5 41 41 H 1.09002 * 113.69345 * 89.12439 * 24 23 5 42 42 H 1.09000 * 113.61086 * 270.88692 * 25 24 23 43 43 H 1.09004 * 113.69101 * 139.98948 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 1.7567 0.1331 2.7683 7 8 0.7903 -0.1768 3.4322 8 7 2.4443 1.2545 3.0618 9 6 3.5586 1.6937 2.2109 10 6 4.7981 1.8975 3.0802 11 6 4.4639 2.8578 4.2240 12 6 3.3570 2.2547 5.0919 13 1 3.6857 1.2920 5.4835 14 6 3.0512 3.1862 6.2362 15 1 2.0587 3.5973 6.3475 16 6 4.0385 3.5138 7.1413 17 7 5.2470 3.0128 7.0061 18 14 3.6595 4.6691 8.5594 19 1 3.1943 3.8811 9.7291 20 1 4.8860 5.4218 8.9259 21 1 2.5970 5.6225 8.1507 22 6 2.0976 2.0579 4.2421 23 6 1.7402 -2.2008 1.7460 24 6 3.0565 -2.4543 2.4996 25 6 3.6331 -1.2490 1.7382 26 1 -0.3633 0.6133 0.8245 27 1 -0.3633 0.4074 -0.9435 28 1 -0.3633 -1.0208 0.1189 29 1 3.7639 0.9339 1.4568 30 1 3.2985 2.6336 1.7243 31 1 5.6026 2.3171 2.4762 32 1 5.1133 0.9383 3.4909 33 1 4.1252 3.8087 3.8126 34 1 5.3535 3.0218 4.8322 35 1 5.9414 3.2430 7.6430 36 1 1.7158 3.0281 3.9245 37 1 1.3374 1.5395 4.8265 38 1 0.8515 -2.3319 2.3632 39 1 1.6754 -2.7243 0.7921 40 1 3.5316 -3.4010 2.2424 41 1 2.9827 -2.2963 3.5755 42 1 4.0857 -1.5124 0.7822 43 1 4.2729 -0.6110 2.3480 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:55 Heat of formation + Delta-G solvation = -96.832360 kcal Electronic energy + Delta-G solvation = -26529.897084 eV Core-core repulsion = 22895.700733 eV Total energy + Delta-G solvation = -3634.196351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96345 -39.27663 -38.25492 -37.98492 -37.20009 -35.37563 -33.11872 -32.10990 -30.59237 -28.51695 -27.14238 -26.60107 -26.00416 -23.39610 -22.56448 -21.09827 -20.44898 -19.30717 -18.98389 -18.31327 -17.48340 -17.40904 -17.08898 -16.72933 -16.58479 -16.08811 -15.53835 -15.08269 -14.90609 -14.61551 -14.45407 -14.15952 -14.07921 -13.94980 -13.71026 -13.55049 -13.52363 -13.46426 -13.24601 -13.16766 -12.87782 -12.63855 -12.56813 -12.11827 -12.01518 -11.91323 -11.82116 -11.69603 -11.54394 -11.33023 -11.10174 -10.90568 -10.75187 -10.43888 -9.57243 -8.11134 -6.25883 -1.16488 1.26868 1.41300 1.42406 1.52123 1.62617 1.90593 2.40062 2.43356 2.70185 3.07719 3.16071 3.25803 3.30954 3.65267 3.99381 4.00788 4.06727 4.17544 4.22729 4.32422 4.52167 4.53455 4.57738 4.62980 4.77860 4.80972 4.84998 4.87837 4.91862 4.94897 5.00286 5.11655 5.23426 5.28250 5.42984 5.50476 5.60783 5.91066 6.09843 6.32573 6.39089 6.82178 6.97484 7.42268 8.92870 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.004163 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.896024 B = 6724.907379 C = 6770.019504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.434 3.566 3 O -0.953 6.953 4 O -0.941 6.941 5 C -0.608 4.608 6 C 0.545 3.455 7 O -0.562 6.562 8 N -0.593 5.593 9 C 0.112 3.888 10 C -0.133 4.133 11 C -0.106 4.106 12 C 0.043 3.957 13 H -0.008 1.008 14 C -0.537 4.537 15 H 0.054 0.946 16 C 0.019 3.981 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.128 3.872 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.127 0.873 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.131 0.869 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -9.662 -16.035 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.617 3.383 3 O -0.950 6.950 4 O -0.939 6.939 5 C -0.698 4.698 6 C 0.331 3.669 7 O -0.441 6.441 8 N -0.324 5.324 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.144 4.144 12 C 0.023 3.977 13 H 0.010 0.990 14 C -0.575 4.575 15 H 0.072 0.928 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.780 3.220 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.006 3.994 23 C -0.128 4.128 24 C -0.163 4.163 25 C -0.152 4.152 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.100 -9.490 -16.252 19.499 hybrid contribution -0.425 0.682 1.938 2.098 sum -5.525 -8.808 -14.314 17.692 Atomic orbital electron populations 1.30087 1.22083 1.14063 1.13022 1.07580 0.80330 0.74890 0.75546 1.93618 1.80492 1.34913 1.85945 1.93578 1.80836 1.67424 1.52013 1.31562 1.10983 1.09032 1.18240 1.19166 0.82734 0.80352 0.84651 1.90645 1.28614 1.72361 1.52507 1.48248 1.32809 1.24228 1.27118 1.22052 0.85452 1.01873 0.91634 1.21948 0.97399 1.00127 0.97596 1.21442 1.01101 0.96614 0.95277 1.18867 0.91426 0.94804 0.92559 0.98968 1.21410 0.96778 1.28634 1.10692 0.92758 1.25667 0.94875 0.97522 1.00007 1.70002 1.02738 1.45233 1.37198 0.85611 0.77755 0.79092 0.79516 1.20484 1.20725 1.19211 1.21715 0.98732 0.93774 0.85178 1.22809 1.00319 0.85459 1.04185 1.22712 0.95918 0.98941 0.98743 1.23093 0.89154 0.98532 1.04455 0.85432 0.82704 0.82421 0.89013 0.89805 0.89434 0.92855 0.94529 0.91566 0.92935 0.91743 0.91723 0.88733 0.84533 0.87381 0.91915 0.85073 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -9.30 10.39 113.37 1.18 -8.12 16 2 S 2.43 50.79 4.61 -56.49 -0.26 50.53 16 3 O -0.95 -25.80 14.28 -127.37 -1.82 -27.62 16 4 O -0.94 -21.35 17.47 -127.37 -2.23 -23.57 16 5 C -0.61 -14.30 0.41 -11.01 0.00 -14.31 16 6 C 0.54 18.03 6.19 87.66 0.54 18.57 16 7 O -0.56 -21.53 15.48 -3.02 -0.05 -21.58 16 8 N -0.59 -21.74 2.98 -819.76 -2.44 -24.18 16 9 C 0.11 3.67 3.60 86.22 0.31 3.98 16 10 C -0.13 -4.75 5.88 30.53 0.18 -4.57 16 11 C -0.11 -4.85 4.96 30.62 0.15 -4.70 16 12 C 0.04 2.13 2.25 -11.46 -0.03 2.10 16 13 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 14 C -0.54 -29.39 8.56 25.60 0.22 -29.17 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 16 C 0.02 1.02 5.30 84.66 0.45 1.46 16 17 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 18 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.13 5.56 5.65 86.36 0.49 6.05 16 23 C -0.09 -1.62 7.02 31.12 0.22 -1.40 16 24 C -0.12 -2.49 7.80 31.12 0.24 -2.24 16 25 C -0.11 -2.43 5.82 31.12 0.18 -2.25 16 26 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.51 3.36 -2.39 -0.01 2.51 16 30 H 0.08 2.78 7.65 -2.39 -0.02 2.76 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.05 1.94 7.27 -2.39 -0.02 1.92 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 3.44 6.05 -2.38 -0.01 3.42 16 35 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.06 2.97 7.03 -2.39 -0.02 2.96 16 38 H 0.09 1.86 7.38 -2.39 -0.02 1.84 16 39 H 0.14 1.53 7.86 -2.39 -0.02 1.51 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.13 2.09 7.83 -2.39 -0.02 2.07 16 43 H 0.08 2.08 5.39 -2.39 -0.01 2.07 16 Total: -1.00 -70.48 339.99 0.62 -69.87 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.01 Total: 17.39 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.13 Total: -34.60 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.20 Total: -75.75 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -4.09 Total: -72.77 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.26 Total: 50.53 kcal Total: -70.48 0.62 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.967 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds