Wall clock time and date at job start Tue Mar 31 2020 11:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00098 * 2 1 4 4 O 1.20834 * 119.99618 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00326 * 180.02562 * 3 2 1 6 6 S 1.81394 * 109.47341 * 179.97438 * 5 3 2 7 7 C 1.81401 * 103.00273 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.47277 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46827 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99769 * 179.97438 * 9 8 7 12 12 C 1.46928 * 120.63038 * 0.02562 * 11 9 8 13 13 C 1.53187 * 108.77625 * 126.37031 * 12 11 9 14 14 C 1.53046 * 109.31363 * 54.63376 * 13 12 11 15 15 C 1.53046 * 109.53579 * 298.63645 * 14 13 12 16 16 H 1.08995 * 109.49499 * 301.40973 * 15 14 13 17 17 C 1.50700 * 109.49623 * 181.31259 * 15 14 13 18 18 H 1.08003 * 120.00020 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00099 * 179.97438 * 17 15 14 20 20 N 1.31518 * 119.99891 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 119.99797 * 0.02562 * 19 17 15 22 22 H 1.48505 * 109.46941 * 90.00222 * 21 19 17 23 23 H 1.48500 * 109.46962 * 209.99490 * 21 19 17 24 24 H 1.48497 * 109.47146 * 329.99916 * 21 19 17 25 25 C 1.46921 * 120.63025 * 179.97438 * 11 9 8 26 26 H 1.09000 * 109.47036 * 300.00337 * 1 2 3 27 27 H 1.09003 * 109.47193 * 60.00201 * 1 2 3 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99878 * 5 3 2 30 30 H 1.09004 * 109.46869 * 300.00287 * 5 3 2 31 31 H 1.09000 * 109.47243 * 59.99387 * 7 6 5 32 32 H 1.08998 * 109.46667 * 300.00333 * 7 6 5 33 33 H 1.08994 * 109.47496 * 59.99704 * 8 7 6 34 34 H 1.09000 * 109.46758 * 299.99013 * 8 7 6 35 35 H 1.09000 * 109.58351 * 246.16146 * 12 11 9 36 36 H 1.09002 * 109.58642 * 6.43802 * 12 11 9 37 37 H 1.09001 * 109.49833 * 294.68424 * 13 12 11 38 38 H 1.08996 * 109.49835 * 174.58430 * 13 12 11 39 39 H 1.08993 * 109.46296 * 178.61734 * 14 13 12 40 40 H 1.09000 * 109.45696 * 58.65290 * 14 13 12 41 41 H 0.96996 * 119.99616 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.58905 * 113.84216 * 25 11 9 43 43 H 1.09008 * 109.58585 * 353.41416 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 16 4.0806 3.0144 -0.0012 7 6 5.8913 2.9047 -0.0026 8 6 6.4877 4.3136 -0.0026 9 6 7.9920 4.2223 -0.0045 10 8 8.5336 3.1373 -0.0052 11 7 8.7353 5.3466 -0.0053 12 6 8.0935 6.6683 -0.0039 13 6 8.6537 7.4872 1.1633 14 6 10.1804 7.5299 1.0650 15 6 10.7393 6.1083 1.1601 16 1 10.4286 5.6576 2.1026 17 6 12.2442 6.1541 1.0956 18 1 12.7518 7.1023 0.9970 19 6 12.9730 4.9857 1.1634 20 7 14.2864 5.0257 1.1066 21 14 12.0950 3.3458 1.3345 22 1 11.8067 2.7956 -0.0144 23 1 12.9594 2.3972 2.0816 24 1 10.8211 3.5410 2.0722 25 6 10.2027 5.2738 -0.0065 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 6.2222 2.3696 -0.8928 32 1 6.2235 2.3698 0.8871 33 1 6.1568 4.8483 0.8877 34 1 6.1555 4.8487 -0.8923 35 1 8.3058 7.1786 -0.9434 36 1 7.0161 6.5513 0.1129 37 1 8.3627 7.0234 2.1058 38 1 8.2578 8.5018 1.1190 39 1 10.5801 8.1324 1.8805 40 1 10.4706 7.9711 0.1115 41 1 14.7991 4.2038 1.1547 42 1 10.5874 5.6701 -0.9462 43 1 10.5172 4.2368 0.1112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:02 Heat of formation + Delta-G solvation = -121.675768 kcal Electronic energy + Delta-G solvation = -23814.766076 eV Core-core repulsion = 20179.492434 eV Total energy + Delta-G solvation = -3635.273642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82796 -39.87947 -37.13568 -36.95741 -33.64968 -32.80097 -31.94831 -31.24466 -30.50834 -27.74820 -25.96589 -25.22677 -23.46486 -22.06655 -21.75964 -19.72391 -18.51798 -18.14615 -17.48027 -17.11788 -17.03760 -16.72692 -15.89590 -15.83590 -15.58839 -14.65489 -14.38219 -14.10465 -13.99860 -13.95428 -13.84138 -13.20861 -13.05137 -12.84077 -12.71516 -12.53036 -12.45227 -12.36064 -12.12701 -11.53594 -11.32288 -11.28913 -11.09636 -11.02911 -10.63171 -10.44133 -10.29949 -10.13291 -9.80877 -9.62036 -9.22695 -9.10923 -8.62626 -8.12276 -8.00505 -6.12618 -4.14226 0.88939 1.69945 2.11635 2.33610 2.87433 3.34763 3.37526 3.47093 3.53737 4.25240 4.39863 4.45835 4.57108 4.64249 4.71993 4.73409 4.75876 4.76266 5.06412 5.08805 5.19562 5.30073 5.34541 5.48319 5.53165 5.69371 5.79277 5.84015 5.97617 6.06975 6.14384 6.37033 6.49495 6.61260 6.71696 6.81704 7.11954 7.21413 7.40588 7.69073 7.79780 8.41251 8.50463 8.90584 9.48838 10.99361 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.002624 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.310698 B =10668.325909 C =11609.651520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.479 3.521 4 O -0.484 6.484 5 C -0.105 4.105 6 S -0.186 6.186 7 C -0.083 4.083 8 C -0.123 4.123 9 C 0.511 3.489 10 O -0.548 6.548 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.137 4.137 14 C -0.101 4.101 15 C 0.004 3.996 16 H 0.030 0.970 17 C -0.516 4.516 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.881 3.119 22 H -0.273 1.273 23 H -0.296 1.296 24 H -0.264 1.264 25 C 0.102 3.898 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.498 -5.453 -3.057 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.370 6.370 5 C -0.253 4.253 6 S 0.040 5.960 7 C -0.232 4.232 8 C -0.164 4.164 9 C 0.297 3.703 10 O -0.427 6.427 11 N -0.338 5.338 12 C -0.016 4.016 13 C -0.175 4.175 14 C -0.139 4.139 15 C -0.015 4.015 16 H 0.048 0.952 17 C -0.554 4.554 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.711 3.289 22 H -0.200 1.200 23 H -0.223 1.223 24 H -0.189 1.189 25 C -0.019 4.019 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.922 -4.938 -3.064 26.566 hybrid contribution 0.279 -2.018 0.053 2.038 sum -25.643 -6.956 -3.011 26.740 Atomic orbital electron populations 1.23334 0.75535 1.03982 1.02874 1.86482 1.23931 1.32660 1.84235 1.22604 0.90490 0.81835 0.73112 1.90734 1.66441 1.35968 1.43875 1.23039 0.92210 1.01041 1.09031 1.87304 1.05354 1.05080 1.98241 1.23266 0.92210 1.00697 1.07044 1.21340 0.93055 0.96584 1.05425 1.20348 0.88771 0.84343 0.76828 1.90694 1.73834 1.27402 1.50723 1.48430 1.08387 1.05307 1.71670 1.21747 0.96724 0.83607 0.99506 1.21989 0.98493 0.99055 0.97992 1.21444 0.91987 0.98882 1.01543 1.19481 0.96610 0.91851 0.93581 0.95188 1.20954 0.88111 0.95139 1.51231 0.90455 1.25056 0.94761 0.99120 0.94125 1.69892 1.05274 1.28267 1.49856 0.86961 0.79230 0.83734 0.78988 1.19974 1.22332 1.18892 1.22614 0.75469 1.02521 1.01287 0.91615 0.91618 0.87772 0.85709 0.85688 0.88834 0.88833 0.87979 0.88050 0.91334 0.90514 0.91964 0.91503 0.92170 0.92471 0.92505 0.91473 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.95 10.57 -39.25 -0.41 -3.37 16 3 C 0.48 4.68 7.98 36.00 0.29 4.97 16 4 O -0.48 -6.17 15.61 -18.76 -0.29 -6.46 16 5 C -0.10 -0.86 6.53 36.00 0.24 -0.62 16 6 S -0.19 -1.99 20.88 -107.50 -2.24 -4.23 16 7 C -0.08 -0.94 5.23 37.16 0.19 -0.75 16 8 C -0.12 -1.46 4.05 -27.88 -0.11 -1.58 16 9 C 0.51 8.82 7.70 -10.98 -0.08 8.73 16 10 O -0.55 -11.69 15.39 5.56 0.09 -11.61 16 11 N -0.61 -10.70 2.97 -172.80 -0.51 -11.21 16 12 C 0.11 1.42 6.34 -3.71 -0.02 1.39 16 13 C -0.14 -1.93 6.08 -26.61 -0.16 -2.09 16 14 C -0.10 -1.84 5.11 -26.68 -0.14 -1.98 16 15 C 0.00 0.10 1.84 -91.68 -0.17 -0.07 16 16 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 17 C -0.52 -14.18 9.14 -34.44 -0.31 -14.49 16 18 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 20 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 21 Si 0.88 23.07 24.32 -169.99 -4.13 18.94 16 22 H -0.27 -7.22 6.92 56.52 0.39 -6.83 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 24 H -0.26 -6.89 6.53 56.52 0.37 -6.53 16 25 C 0.10 2.23 5.11 -3.74 -0.02 2.21 16 26 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 27 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.12 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.09 1.06 8.10 -51.92 -0.42 0.64 16 32 H 0.09 1.10 8.10 -51.92 -0.42 0.68 16 33 H 0.10 1.08 7.69 -51.93 -0.40 0.68 16 34 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.96 2.34 -51.92 -0.12 1.83 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -34.89 358.52 -7.38 -42.27 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.70 Total: -2.20 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.66 Total: -1.01 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.26 Total: -37.73 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.62 Total: -21.44 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.13 Total: 18.94 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.24 Total: -4.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.89 -7.38 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.406 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds