Wall clock time and date at job start Tue Mar 31 2020 10:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47331 * 2 1 4 4 C 1.34228 * 117.00230 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99999 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00308 * 180.02562 * 4 3 2 7 7 C 1.53004 * 110.05324 * 305.17953 * 6 4 3 8 8 C 1.54260 * 110.03506 * 183.76212 * 6 4 3 9 9 C 1.54890 * 104.19673 * 217.10105 * 8 6 4 10 10 C 1.54892 * 102.74570 * 37.94195 * 9 8 6 11 11 C 1.53881 * 110.03508 * 66.58928 * 6 4 3 12 12 H 1.08994 * 110.03662 * 238.57756 * 11 6 4 13 13 N 1.46502 * 110.03051 * 0.02562 * 11 6 4 14 14 C 1.34775 * 119.99905 * 238.36926 * 13 11 6 15 15 O 1.21275 * 120.00059 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99923 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46916 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99737 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00411 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99944 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47026 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47386 * 120.00136 * 22 20 18 25 25 H 1.48505 * 109.46791 * 240.00072 * 22 20 18 26 26 H 1.09002 * 109.46978 * 60.00208 * 1 2 3 27 27 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46915 * 299.99905 * 1 2 3 29 29 H 1.09002 * 109.47413 * 239.99670 * 2 1 3 30 30 H 1.09001 * 109.47453 * 120.00019 * 2 1 3 31 31 H 1.08994 * 109.47200 * 181.41642 * 7 6 4 32 32 H 1.08997 * 109.47084 * 301.41861 * 7 6 4 33 33 H 1.09003 * 109.47148 * 61.41201 * 7 6 4 34 34 H 1.08997 * 110.48445 * 335.78179 * 8 6 4 35 35 H 1.09002 * 110.48458 * 98.29144 * 8 6 4 36 36 H 1.09003 * 110.75959 * 279.62962 * 9 8 6 37 37 H 1.08997 * 110.75753 * 156.25474 * 9 8 6 38 38 H 1.09000 * 110.48515 * 203.37927 * 10 9 8 39 39 H 1.09006 * 110.48321 * 80.73823 * 10 9 8 40 40 H 0.96997 * 120.00189 * 58.37019 * 13 11 6 41 41 H 1.08998 * 109.47124 * 300.00186 * 16 14 13 42 42 H 1.09003 * 109.46523 * 60.00380 * 16 14 13 43 43 H 0.96996 * 119.99750 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.3556 3.7394 -1.1740 8 6 5.4591 2.8729 -0.0959 9 6 5.9451 4.0300 0.8120 10 6 4.9424 3.9831 1.9916 11 6 3.5922 3.6433 1.3273 12 1 3.0301 4.5571 1.1350 13 7 2.8184 2.7497 2.1927 14 6 1.5980 3.1222 2.6268 15 8 1.1403 4.1969 2.3006 16 6 0.8017 2.2028 3.5166 17 16 -0.7810 2.9801 3.9252 18 6 -1.4843 1.7256 4.9430 19 1 -0.9354 0.8156 5.1356 20 6 -2.7442 1.9063 5.4966 21 7 -3.4135 3.0151 5.2616 22 14 -3.4901 0.5759 6.5751 23 1 -2.5432 -0.5630 6.6823 24 1 -3.7573 1.1272 7.9278 25 1 -4.7631 0.1057 5.9720 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7972 4.7359 -1.1793 32 1 3.5933 3.2317 -2.1088 33 1 2.2737 3.8218 -1.0703 34 1 5.8248 1.9162 0.2769 35 1 5.7841 3.0300 -1.1244 36 1 5.8817 4.9842 0.2889 37 1 6.9611 3.8465 1.1611 38 1 4.8904 4.9527 2.4869 39 1 5.2247 3.2056 2.7015 40 1 3.1842 1.8901 2.4533 41 1 0.6206 1.2617 2.9974 42 1 1.3599 2.0108 4.4330 43 1 -4.2938 3.1416 5.6487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598481654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:47 Heat of formation + Delta-G solvation = -139.348891 kcal Electronic energy + Delta-G solvation = -25414.578056 eV Core-core repulsion = 21778.538050 eV Total energy + Delta-G solvation = -3636.040006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25157 -39.28097 -37.98129 -36.47832 -33.60485 -32.43490 -32.17536 -31.15520 -29.71181 -27.35660 -25.80757 -25.42645 -23.85695 -22.15369 -21.10667 -20.49666 -19.52952 -18.01475 -17.45730 -17.00320 -16.73058 -16.30573 -15.36365 -15.12823 -14.81177 -14.79118 -14.38982 -14.11536 -13.92121 -13.44516 -13.18086 -13.00877 -12.79059 -12.64992 -12.57180 -12.38878 -12.09275 -11.92717 -11.63471 -11.51921 -11.48141 -11.27715 -11.08051 -11.04017 -10.96586 -10.84535 -10.75720 -10.51055 -10.32196 -9.80781 -9.38822 -9.08509 -8.92676 -8.23272 -6.49955 -6.22653 -3.92637 2.11365 2.60423 3.01662 3.08834 3.20488 3.27395 3.31781 3.68866 4.08902 4.19647 4.28060 4.54097 4.82046 4.92813 4.94310 5.00060 5.01933 5.05075 5.11648 5.12854 5.25752 5.31180 5.37064 5.49928 5.57880 5.59586 5.63828 5.71985 5.76120 5.85199 5.87724 5.88497 5.91226 6.05183 6.08198 6.09954 6.23200 6.48954 6.59757 7.59096 7.64012 7.71727 8.34690 8.60215 9.23074 10.84751 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.003817 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.994591 B = 7334.364257 C = 8099.129265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.480 3.520 5 O -0.516 6.516 6 C -0.072 4.072 7 C -0.138 4.138 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.135 4.135 11 C 0.151 3.849 12 H 0.119 0.881 13 N -0.734 5.734 14 C 0.543 3.457 15 O -0.514 6.514 16 C -0.153 4.153 17 S -0.056 6.056 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.394 0.606 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 -1.995 -11.952 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.011 4.011 3 O -0.256 6.256 4 C 0.323 3.677 5 O -0.405 6.405 6 C -0.074 4.074 7 C -0.195 4.195 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.174 4.174 11 C 0.045 3.955 12 H 0.137 0.863 13 N -0.388 5.388 14 C 0.329 3.671 15 O -0.388 6.388 16 C -0.303 4.303 17 S 0.171 5.829 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.743 3.257 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.228 0.772 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.359 -0.407 -12.457 20.566 hybrid contribution 0.204 -2.828 1.191 3.075 sum 16.563 -3.234 -11.266 20.291 Atomic orbital electron populations 1.21843 0.91979 1.03034 1.04521 1.23066 0.95978 0.80010 1.02026 1.86623 1.23741 1.32210 1.83020 1.23333 0.80957 0.91937 0.71448 1.90629 1.60614 1.42948 1.46261 1.21737 0.96877 0.89765 0.99025 1.21882 1.02591 0.99754 0.95289 1.22491 0.90788 1.00607 1.01065 1.22456 0.98929 0.98486 0.95966 1.22792 0.93686 1.02818 0.98069 1.21696 0.92833 0.94460 0.86516 0.86322 1.46125 1.18658 1.21429 1.52572 1.20222 0.80265 0.87113 0.79466 1.90678 1.68726 1.22953 1.56439 1.23533 1.03858 1.02169 1.00789 1.85385 1.07911 1.25889 1.63740 1.22907 1.05161 1.05054 1.35194 0.90973 1.24974 0.95950 0.96276 0.96281 1.70025 1.12898 1.24689 1.42638 0.86146 0.78956 0.80841 0.79734 1.19644 1.20564 1.20568 0.91539 0.90309 0.90293 0.91680 0.91398 0.90723 0.92098 0.90611 0.89427 0.90601 0.90825 0.90707 0.90266 0.90758 0.77160 0.89448 0.89434 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.29 37.16 0.38 -1.51 16 2 C 0.06 0.78 6.19 37.16 0.23 1.00 16 3 O -0.34 -4.77 9.23 -39.25 -0.36 -5.13 16 4 C 0.48 6.30 5.13 36.01 0.18 6.49 16 5 O -0.52 -7.52 15.14 -18.75 -0.28 -7.81 16 6 C -0.07 -0.77 0.88 -154.54 -0.14 -0.91 16 7 C -0.14 -1.33 8.03 37.16 0.30 -1.03 16 8 C -0.11 -0.99 5.72 -25.07 -0.14 -1.13 16 9 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 10 C -0.14 -1.27 6.53 -25.07 -0.16 -1.43 16 11 C 0.15 1.80 3.23 -66.81 -0.22 1.58 16 12 H 0.12 1.61 6.48 -51.93 -0.34 1.27 16 13 N -0.73 -10.28 3.19 -52.72 -0.17 -10.45 16 14 C 0.54 10.04 7.79 -10.98 -0.09 9.96 16 15 O -0.51 -11.31 15.21 5.56 0.08 -11.23 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 18 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 22 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.09 0.89 6.83 -51.93 -0.35 0.54 16 35 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 40 H 0.39 4.98 8.11 -40.82 -0.33 4.65 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.79 368.49 -7.96 -41.75 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.88 Total: 3.57 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.60 Total: -3.64 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.57 Total: -35.57 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.56 Total: -24.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.79 -7.96 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598481654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.598 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds