Wall clock time and date at job start Tue Mar 31 2020 10:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47331 * 2 1 4 4 C 1.34228 * 117.00230 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99999 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00308 * 180.02562 * 4 3 2 7 7 C 1.53004 * 110.05324 * 305.17953 * 6 4 3 8 8 C 1.54260 * 110.03506 * 183.76212 * 6 4 3 9 9 C 1.54890 * 104.19673 * 217.10105 * 8 6 4 10 10 C 1.54892 * 102.74570 * 37.94195 * 9 8 6 11 11 C 1.53881 * 110.03508 * 66.58928 * 6 4 3 12 12 H 1.08994 * 110.03662 * 238.57756 * 11 6 4 13 13 N 1.46502 * 110.03051 * 0.02562 * 11 6 4 14 14 C 1.34775 * 119.99905 * 238.36926 * 13 11 6 15 15 O 1.21275 * 120.00059 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99923 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46916 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99737 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00411 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99944 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47026 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47386 * 120.00136 * 22 20 18 25 25 H 1.48505 * 109.46791 * 240.00072 * 22 20 18 26 26 H 1.09002 * 109.46978 * 60.00208 * 1 2 3 27 27 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46915 * 299.99905 * 1 2 3 29 29 H 1.09002 * 109.47413 * 239.99670 * 2 1 3 30 30 H 1.09001 * 109.47453 * 120.00019 * 2 1 3 31 31 H 1.08994 * 109.47200 * 181.41642 * 7 6 4 32 32 H 1.08997 * 109.47084 * 301.41861 * 7 6 4 33 33 H 1.09003 * 109.47148 * 61.41201 * 7 6 4 34 34 H 1.08997 * 110.48445 * 335.78179 * 8 6 4 35 35 H 1.09002 * 110.48458 * 98.29144 * 8 6 4 36 36 H 1.09003 * 110.75959 * 279.62962 * 9 8 6 37 37 H 1.08997 * 110.75753 * 156.25474 * 9 8 6 38 38 H 1.09000 * 110.48515 * 203.37927 * 10 9 8 39 39 H 1.09006 * 110.48321 * 80.73823 * 10 9 8 40 40 H 0.96997 * 120.00189 * 58.37019 * 13 11 6 41 41 H 1.08998 * 109.47124 * 300.00186 * 16 14 13 42 42 H 1.09003 * 109.46523 * 60.00380 * 16 14 13 43 43 H 0.96996 * 119.99750 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.3556 3.7394 -1.1740 8 6 5.4591 2.8729 -0.0959 9 6 5.9451 4.0300 0.8120 10 6 4.9424 3.9831 1.9916 11 6 3.5922 3.6433 1.3273 12 1 3.0301 4.5571 1.1350 13 7 2.8184 2.7497 2.1927 14 6 1.5980 3.1222 2.6268 15 8 1.1403 4.1969 2.3006 16 6 0.8017 2.2028 3.5166 17 16 -0.7810 2.9801 3.9252 18 6 -1.4843 1.7256 4.9430 19 1 -0.9354 0.8156 5.1356 20 6 -2.7442 1.9063 5.4966 21 7 -3.4135 3.0151 5.2616 22 14 -3.4901 0.5759 6.5751 23 1 -2.5432 -0.5630 6.6823 24 1 -3.7573 1.1272 7.9278 25 1 -4.7631 0.1057 5.9720 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7972 4.7359 -1.1793 32 1 3.5933 3.2317 -2.1088 33 1 2.2737 3.8218 -1.0703 34 1 5.8248 1.9162 0.2769 35 1 5.7841 3.0300 -1.1244 36 1 5.8817 4.9842 0.2889 37 1 6.9611 3.8465 1.1611 38 1 4.8904 4.9527 2.4869 39 1 5.2247 3.2056 2.7015 40 1 3.1842 1.8901 2.4533 41 1 0.6206 1.2617 2.9974 42 1 1.3599 2.0108 4.4330 43 1 -4.2938 3.1416 5.6487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598481654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:46 Heat of formation + Delta-G solvation = -159.715631 kcal Electronic energy + Delta-G solvation = -25415.461224 eV Core-core repulsion = 21778.538050 eV Total energy + Delta-G solvation = -3636.923174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27823 -40.57445 -39.08222 -37.55772 -34.88130 -34.57564 -33.06404 -32.05626 -31.17438 -28.39383 -27.62174 -26.63293 -24.82216 -23.14779 -21.98610 -21.81440 -20.49178 -19.84987 -18.65441 -18.06331 -18.04237 -17.53335 -16.88023 -16.43960 -16.34082 -16.10640 -15.75393 -15.27158 -15.06161 -14.67394 -14.51796 -14.34325 -13.86107 -13.75999 -13.53426 -13.41135 -13.20933 -13.15712 -12.96280 -12.92298 -12.68023 -12.54251 -12.49410 -12.38587 -12.01023 -11.83513 -11.69109 -11.54913 -11.50998 -11.32214 -11.15549 -10.93269 -10.27315 -10.15382 -8.64997 -8.34542 -6.11577 1.06946 1.26012 1.40542 1.45732 1.56675 1.59660 1.66001 2.21890 2.27577 2.99800 3.24626 3.32824 3.43086 3.66115 3.89223 3.94460 3.98143 4.00922 4.16115 4.23657 4.27508 4.28673 4.32373 4.44534 4.49435 4.66166 4.71675 4.79373 4.84381 4.86031 4.93975 5.03230 5.12324 5.13745 5.19849 5.25358 5.39587 5.42328 5.44272 5.50436 6.20242 6.34537 6.67705 7.07246 7.17499 8.74777 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.003817 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.994591 B = 7334.364257 C = 8099.129265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.477 3.523 5 O -0.530 6.530 6 C -0.070 4.070 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.110 4.110 10 C -0.132 4.132 11 C 0.145 3.855 12 H 0.101 0.899 13 N -0.715 5.715 14 C 0.548 3.452 15 O -0.554 6.554 16 C -0.131 4.131 17 S -0.135 6.135 18 C -0.546 4.546 19 H 0.079 0.921 20 C 0.017 3.983 21 N -0.910 5.910 22 Si 0.995 3.005 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.273 1.273 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.179 -3.249 -12.198 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.321 3.679 5 O -0.420 6.420 6 C -0.072 4.072 7 C -0.193 4.193 8 C -0.144 4.144 9 C -0.147 4.147 10 C -0.171 4.171 11 C 0.040 3.960 12 H 0.120 0.880 13 N -0.367 5.367 14 C 0.334 3.666 15 O -0.432 6.432 16 C -0.282 4.282 17 S 0.092 5.908 18 C -0.694 4.694 19 H 0.097 0.903 20 C -0.188 4.188 21 N -0.546 5.546 22 Si 0.817 3.183 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.198 1.198 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.239 0.761 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.440 -1.680 -12.719 22.465 hybrid contribution -0.345 -2.452 1.189 2.746 sum 18.095 -4.132 -11.531 21.851 Atomic orbital electron populations 1.21818 0.92037 1.04034 1.02953 1.23178 0.95910 0.79569 1.02740 1.86640 1.24482 1.33173 1.83062 1.23799 0.80508 0.92705 0.70840 1.90618 1.60746 1.43656 1.46978 1.21854 0.98427 0.88349 0.98557 1.21890 1.01121 1.00967 0.95320 1.22495 0.88713 1.00683 1.02496 1.22459 0.99029 0.98615 0.94607 1.22789 0.92435 1.02941 0.98886 1.21946 0.93569 0.93397 0.87124 0.88046 1.45926 1.17135 1.21967 1.51692 1.19883 0.81265 0.86187 0.79237 1.90668 1.69935 1.24474 1.58083 1.23367 1.00462 1.02272 1.02110 1.85508 1.12809 1.28160 1.64342 1.23213 1.05742 1.05191 1.35264 0.90277 1.26052 0.96329 0.98756 0.97632 1.70177 1.13440 1.27006 1.43986 0.84962 0.78138 0.77739 0.77469 1.18251 1.19926 1.19838 0.91424 0.88071 0.93397 0.90325 0.91257 0.88562 0.90868 0.93021 0.90531 0.88813 0.89283 0.88870 0.90030 0.90513 0.76083 0.88118 0.87823 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 10.29 71.98 0.74 -2.90 16 2 C 0.06 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -9.92 9.23 -51.40 -0.47 -10.39 16 4 C 0.48 12.03 5.13 71.24 0.37 12.39 16 5 O -0.53 -14.72 15.14 21.96 0.33 -14.38 16 6 C -0.07 -1.40 0.88 -52.20 -0.05 -1.44 16 7 C -0.14 -2.43 8.03 71.98 0.58 -1.85 16 8 C -0.11 -1.58 5.72 31.67 0.18 -1.39 16 9 C -0.11 -1.25 6.91 31.89 0.22 -1.03 16 10 C -0.13 -2.19 6.53 31.67 0.21 -1.99 16 11 C 0.14 3.30 3.23 45.72 0.15 3.45 16 12 H 0.10 2.74 6.48 -2.39 -0.02 2.72 16 13 N -0.71 -19.61 3.19 -439.10 -1.40 -21.01 16 14 C 0.55 20.52 7.79 87.66 0.68 21.20 16 15 O -0.55 -25.19 15.21 -3.01 -0.05 -25.24 16 16 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 17 S -0.14 -7.46 20.57 -56.49 -1.16 -8.62 16 18 C -0.55 -31.05 9.50 67.96 0.65 -30.41 16 19 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 20 C 0.02 0.98 5.49 84.86 0.47 1.44 16 21 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 22 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.08 1.36 6.83 -2.39 -0.02 1.34 16 35 H 0.09 1.09 7.84 -2.39 -0.02 1.07 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.25 8.05 -2.38 -0.02 1.24 16 40 H 0.40 9.74 8.11 -92.71 -0.75 8.99 16 41 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.07 368.49 4.89 -70.19 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.25 Total: 24.65 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.07 Total: -5.53 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.12 Total: -76.11 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.19 Total: -50.01 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.16 Total: -8.62 kcal Total: -75.07 4.89 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598481654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.529 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds