Wall clock time and date at job start Tue Mar 31 2020 10:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.46634 * 2 1 4 4 C 1.34235 * 116.99734 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00098 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99888 * 180.02562 * 4 3 2 7 7 C 1.52997 * 110.01940 * 55.72101 * 6 4 3 8 8 C 1.54273 * 110.03161 * 177.16756 * 6 4 3 9 9 C 1.54890 * 104.19504 * 142.89144 * 8 6 4 10 10 C 1.54886 * 102.74838 * 322.05502 * 9 8 6 11 11 C 1.53885 * 110.02907 * 294.32671 * 6 4 3 12 12 H 1.09003 * 110.02395 * 121.43077 * 11 6 4 13 13 N 1.46496 * 110.03407 * 0.02562 * 11 6 4 14 14 C 1.34772 * 120.00132 * 123.98143 * 13 11 6 15 15 O 1.21281 * 120.00420 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99944 * 179.97438 * 14 13 11 17 17 S 1.81002 * 109.46956 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99946 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99567 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00185 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99812 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47190 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47037 * 120.00034 * 22 20 18 25 25 H 1.48499 * 109.47526 * 239.99938 * 22 20 18 26 26 H 1.08998 * 109.47119 * 299.99840 * 1 2 3 27 27 H 1.09009 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47402 * 60.00453 * 1 2 3 29 29 H 1.09003 * 109.47447 * 119.99451 * 2 1 3 30 30 H 1.09002 * 109.47544 * 240.00410 * 2 1 3 31 31 H 1.09001 * 109.47263 * 59.29950 * 7 6 4 32 32 H 1.08999 * 109.46792 * 179.30075 * 7 6 4 33 33 H 1.09004 * 109.46995 * 299.29789 * 7 6 4 34 34 H 1.09001 * 110.48199 * 261.56522 * 8 6 4 35 35 H 1.08992 * 110.48638 * 24.21033 * 8 6 4 36 36 H 1.09000 * 110.75578 * 203.73538 * 9 8 6 37 37 H 1.08999 * 110.75742 * 80.36960 * 9 8 6 38 38 H 1.09000 * 110.49045 * 279.26316 * 10 9 8 39 39 H 1.09008 * 110.48691 * 156.62189 * 10 9 8 40 40 H 0.96999 * 119.99783 * 303.98894 * 13 11 6 41 41 H 1.09000 * 109.47115 * 300.00706 * 16 14 13 42 42 H 1.08999 * 109.47301 * 60.00487 * 16 14 13 43 43 H 0.97004 * 120.00269 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 0.0000 7 6 3.3731 3.7303 1.1886 8 6 5.4603 2.8726 0.0709 9 6 5.9317 4.0363 -0.8362 10 6 4.9104 3.9978 -2.0000 11 6 3.5710 3.6530 -1.3168 12 1 3.0120 4.5654 -1.1089 13 7 2.7826 2.7661 -2.1759 14 6 1.5757 3.1621 -2.6263 15 8 1.1424 4.2529 -2.3209 16 6 0.7650 2.2499 -3.5105 17 16 -0.7938 3.0603 -3.9457 18 6 -1.5194 1.8083 -4.9510 19 1 -0.9915 0.8823 -5.1252 20 6 -2.7693 2.0120 -5.5190 21 7 -3.4124 3.1408 -5.3071 22 14 -3.5382 0.6850 -6.5854 23 1 -2.6190 -0.4786 -6.6673 24 1 -4.8280 0.2552 -5.9877 25 1 -3.7792 1.2229 -7.9483 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.6362 3.2222 2.1164 32 1 3.8046 4.7312 1.1874 33 1 2.2884 3.8022 1.1087 34 1 5.8017 3.0247 1.0948 35 1 5.8200 1.9187 -0.3146 36 1 6.9421 3.8555 -1.2027 37 1 5.8766 4.9866 -0.3052 38 1 5.1813 3.2256 -2.7200 39 1 4.8505 4.9710 -2.4874 40 1 3.1293 1.8938 -2.4204 41 1 1.3264 2.0311 -4.4189 42 1 0.5562 1.3209 -2.9800 43 1 -4.2861 3.2831 -5.7038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598481662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:49 Heat of formation + Delta-G solvation = -159.558294 kcal Electronic energy + Delta-G solvation = -25393.169802 eV Core-core repulsion = 21756.253450 eV Total energy + Delta-G solvation = -3636.916352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28392 -40.57663 -39.08163 -37.56406 -34.88056 -34.57687 -33.06398 -32.05916 -31.17454 -28.39435 -27.62210 -26.63965 -24.82120 -23.15027 -22.00678 -21.79054 -20.49779 -19.85165 -18.66169 -18.06549 -18.04668 -17.51900 -16.88019 -16.43755 -16.34148 -16.11143 -15.75644 -15.27364 -15.06282 -14.67545 -14.51858 -14.34688 -13.86485 -13.75471 -13.53746 -13.41598 -13.21240 -13.15713 -12.96244 -12.92191 -12.67860 -12.54203 -12.49350 -12.39421 -12.01208 -11.83477 -11.69144 -11.54960 -11.51114 -11.32530 -11.15574 -10.93471 -10.27344 -10.15165 -8.65079 -8.34508 -6.11633 1.06282 1.26017 1.40606 1.45775 1.56723 1.59357 1.65610 2.21698 2.27555 2.99862 3.24249 3.32636 3.42705 3.65788 3.89065 3.94507 3.97819 4.01052 4.16280 4.23754 4.27435 4.28797 4.32234 4.44572 4.49330 4.66039 4.71641 4.79275 4.84220 4.86186 4.94031 5.02987 5.12118 5.13547 5.19713 5.25100 5.39382 5.42271 5.44067 5.50018 6.20224 6.34069 6.67320 7.07266 7.17255 8.74822 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.003807 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.880983 B = 7353.601470 C = 8141.987457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.477 3.523 5 O -0.530 6.530 6 C -0.069 4.069 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.110 4.110 10 C -0.133 4.133 11 C 0.145 3.855 12 H 0.101 0.899 13 N -0.714 5.714 14 C 0.548 3.452 15 O -0.555 6.555 16 C -0.131 4.131 17 S -0.136 6.136 18 C -0.546 4.546 19 H 0.079 0.921 20 C 0.017 3.983 21 N -0.910 5.910 22 Si 0.995 3.005 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.274 1.274 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.056 -3.670 12.414 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.321 3.679 5 O -0.419 6.419 6 C -0.071 4.071 7 C -0.193 4.193 8 C -0.144 4.144 9 C -0.147 4.147 10 C -0.171 4.171 11 C 0.040 3.960 12 H 0.119 0.881 13 N -0.366 5.366 14 C 0.334 3.666 15 O -0.432 6.432 16 C -0.282 4.282 17 S 0.091 5.909 18 C -0.694 4.694 19 H 0.097 0.903 20 C -0.188 4.188 21 N -0.546 5.546 22 Si 0.817 3.183 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.199 1.199 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.363 -2.071 12.898 22.535 hybrid contribution -0.381 -2.458 -1.159 2.744 sum 17.982 -4.529 11.738 21.946 Atomic orbital electron populations 1.21820 0.92019 1.04049 1.02961 1.23187 0.95926 0.79554 1.02772 1.86645 1.24445 1.33189 1.83063 1.23798 0.80529 0.92692 0.70892 1.90620 1.60746 1.43653 1.46920 1.21845 0.98415 0.88333 0.98531 1.21894 1.01235 1.01064 0.95119 1.22497 0.88726 1.00609 1.02530 1.22461 0.98907 0.98580 0.94777 1.22793 0.92595 1.02871 0.98860 1.21945 0.93275 0.93483 0.87343 0.88053 1.45914 1.18107 1.20713 1.51893 1.19886 0.81170 0.86383 0.79149 1.90670 1.70503 1.23446 1.58598 1.23366 1.00389 1.02323 1.02115 1.85511 1.14311 1.26546 1.64524 1.23214 1.06628 1.04044 1.35510 0.90262 1.26050 0.96453 0.98712 0.97560 1.70175 1.14582 1.25972 1.43890 0.84961 0.78099 0.77764 0.77474 1.18240 1.19834 1.19934 0.91440 0.88063 0.93348 0.90337 0.91203 0.90791 0.88581 0.92957 0.88769 0.90522 0.88895 0.89282 0.90574 0.90132 0.76139 0.87829 0.88061 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 10.29 71.98 0.74 -2.82 16 2 C 0.06 1.39 6.19 71.98 0.45 1.83 16 3 O -0.36 -9.76 9.23 -51.46 -0.48 -10.23 16 4 C 0.48 11.87 5.10 71.24 0.36 12.23 16 5 O -0.53 -14.57 15.14 21.97 0.33 -14.24 16 6 C -0.07 -1.37 0.88 -52.20 -0.05 -1.42 16 7 C -0.14 -2.39 8.04 71.98 0.58 -1.81 16 8 C -0.11 -1.57 5.72 31.67 0.18 -1.38 16 9 C -0.11 -1.27 6.91 31.88 0.22 -1.05 16 10 C -0.13 -2.24 6.53 31.67 0.21 -2.03 16 11 C 0.14 3.30 3.23 45.72 0.15 3.45 16 12 H 0.10 2.74 6.48 -2.39 -0.02 2.73 16 13 N -0.71 -19.61 3.21 -439.10 -1.41 -21.02 16 14 C 0.55 20.52 7.85 87.66 0.69 21.21 16 15 O -0.55 -25.23 15.21 -3.03 -0.05 -25.27 16 16 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 17 S -0.14 -7.50 20.57 -56.49 -1.16 -8.67 16 18 C -0.55 -31.05 9.50 67.95 0.65 -30.40 16 19 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 20 C 0.02 0.97 5.49 84.86 0.47 1.44 16 21 N -0.91 -55.40 13.22 21.65 0.29 -55.12 16 22 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.17 8.09 -2.38 -0.02 1.15 16 34 H 0.09 1.09 7.84 -2.39 -0.02 1.07 16 35 H 0.08 1.35 6.84 -2.39 -0.02 1.34 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 40 H 0.40 9.77 8.00 -92.71 -0.74 9.03 16 41 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.05 368.44 4.89 -70.16 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.26 Total: 24.57 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.08 Total: -5.62 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.12 Total: -76.14 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.19 Total: -49.74 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -1.16 Total: -8.67 kcal Total: -75.05 4.89 -70.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598481662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.400 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds