Wall clock time and date at job start Tue Mar 31 2020 11:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00038 * 2 1 4 4 C 1.53008 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46723 * 65.00261 * 4 3 2 6 6 C 1.36800 * 120.00312 * 86.41784 * 5 4 3 7 7 H 1.07989 * 120.00304 * 222.16676 * 6 5 4 8 8 C 1.39087 * 119.99686 * 42.16547 * 6 5 4 9 9 N 1.31342 * 120.00067 * 18.17556 * 8 6 5 10 10 Si 1.86801 * 119.99550 * 198.17748 * 8 6 5 11 11 H 1.48498 * 109.47413 * 60.00331 * 10 8 6 12 12 H 1.48505 * 109.46772 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47058 * 299.99690 * 10 8 6 14 14 C 1.34770 * 119.99608 * 266.41156 * 5 4 3 15 15 O 1.21653 * 120.00526 * 4.88919 * 14 5 4 16 16 C 1.47315 * 119.99851 * 184.88429 * 14 5 4 17 17 C 1.38982 * 120.69698 * 39.56047 * 16 14 5 18 18 C 1.38775 * 120.57617 * 179.68026 * 17 16 14 19 19 C 1.36146 * 121.83977 * 0.63549 * 18 17 16 20 20 C 1.40520 * 120.67922 * 359.66878 * 19 18 17 21 21 C 1.40477 * 121.28751 * 180.02562 * 20 19 18 22 22 C 1.36624 * 119.60258 * 179.97438 * 21 20 19 23 23 O 1.35891 * 119.56435 * 180.02562 * 22 21 20 24 24 C 1.39764 * 120.87788 * 0.02562 * 22 21 20 25 25 C 1.36223 * 120.85477 * 359.97213 * 24 22 21 26 26 C 1.40036 * 119.69179 * 0.04828 * 25 24 22 27 27 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46997 * 299.99918 * 1 2 3 29 29 H 1.08997 * 109.47156 * 59.99907 * 1 2 3 30 30 H 1.09005 * 109.47368 * 60.00127 * 3 2 1 31 31 H 1.09000 * 109.47362 * 299.99969 * 3 2 1 32 32 H 1.09000 * 109.47091 * 304.99988 * 4 3 2 33 33 H 1.09005 * 109.46645 * 185.00128 * 4 3 2 34 34 H 0.97001 * 119.99727 * 180.02562 * 9 8 6 35 35 H 1.07999 * 119.70550 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.08112 * 180.30707 * 18 17 16 37 37 H 1.08008 * 119.66509 * 179.69747 * 19 18 17 38 38 H 1.08005 * 120.20406 * 0.02562 * 21 20 19 39 39 H 0.96702 * 113.99828 * 89.99690 * 23 22 21 40 40 H 1.08000 * 119.57305 * 180.02562 * 24 22 21 41 41 H 1.08005 * 120.15273 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1971 1.3373 -2.3575 7 1 3.8620 1.0005 -3.3273 8 6 4.8528 2.5576 -2.2335 9 7 5.5669 2.8135 -1.1613 10 14 4.7178 3.8326 -3.5921 11 1 3.2933 4.2082 -3.7788 12 1 5.5021 5.0375 -3.2199 13 1 5.2504 3.2661 -4.8573 14 6 4.1654 -0.7692 -1.3120 15 8 3.8849 -1.4678 -0.3564 16 6 4.7113 -1.3804 -2.5362 17 6 5.7282 -0.7558 -3.2484 18 6 6.2451 -1.3371 -4.3977 19 6 5.7756 -2.5217 -4.8769 20 6 4.7444 -3.2062 -4.2116 21 6 4.2506 -4.4295 -4.6945 22 6 3.2474 -5.0658 -4.0199 23 8 2.7707 -6.2494 -4.4874 24 6 2.7047 -4.5157 -2.8553 25 6 3.1629 -3.3311 -2.3629 26 6 4.1902 -2.6532 -3.0309 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 6.0238 3.6648 -1.0747 35 1 6.1227 0.1880 -2.9018 36 1 7.0385 -0.8330 -4.9296 37 1 6.2004 -2.9401 -5.7775 38 1 4.6622 -4.8648 -5.5932 39 1 3.2324 -7.0245 -4.1391 40 1 1.9125 -5.0370 -2.3385 41 1 2.7356 -2.9165 -1.4618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601625002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:18 Heat of formation + Delta-G solvation = -67.651305 kcal Electronic energy + Delta-G solvation = -26649.068006 eV Core-core repulsion = 22880.693089 eV Total energy + Delta-G solvation = -3768.374917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06766 -38.65681 -37.52228 -36.78859 -35.06948 -34.57138 -31.97632 -31.69586 -29.63517 -29.21102 -28.03097 -25.78233 -25.04352 -23.53059 -22.52928 -22.32896 -21.19247 -19.30612 -18.42885 -17.37246 -16.83330 -16.09203 -15.82176 -15.56091 -15.38393 -15.28264 -14.57541 -14.49009 -14.40426 -14.03461 -13.63988 -13.58035 -12.96205 -12.80177 -12.65801 -12.56859 -12.01501 -11.88685 -11.60931 -11.45838 -11.21951 -11.13248 -11.02972 -10.74430 -10.63653 -10.50627 -10.41462 -10.29676 -10.17048 -9.32951 -9.17480 -9.00932 -8.42201 -8.07581 -7.51828 -7.33862 -6.47600 -4.18867 0.85235 1.40576 2.31117 3.06942 3.14673 3.17243 3.31674 3.95506 4.01914 4.37106 4.49503 4.55874 4.68111 4.97022 5.13181 5.23609 5.42405 5.46885 5.58587 5.65313 5.72871 5.75854 5.87177 5.96143 6.01002 6.05776 6.11085 6.23944 6.33205 6.38317 6.55285 6.60094 6.63487 6.77880 6.80786 7.03355 7.09654 7.13464 7.23194 7.35296 7.45572 7.80523 7.84502 7.90010 8.31817 8.98700 9.43552 9.90419 10.53362 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.005586 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.486712 B = 5011.267085 C = 6608.033783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.050 3.950 4 C 0.118 3.882 5 N -0.426 5.426 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.045 3.955 9 N -0.860 5.860 10 Si 0.910 3.090 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.518 3.482 15 O -0.580 6.580 16 C -0.071 4.071 17 C -0.066 4.066 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.044 4.044 21 C -0.143 4.143 22 C 0.099 3.901 23 O -0.504 6.504 24 C -0.159 4.159 25 C -0.064 4.064 26 C -0.035 4.035 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.272 0.728 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.384 0.616 40 H 0.123 0.877 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -6.549 -4.018 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.144 5.144 6 C -0.464 4.464 7 H 0.105 0.895 8 C -0.161 4.161 9 N -0.496 5.496 10 Si 0.736 3.264 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.307 3.693 15 O -0.465 6.465 16 C -0.074 4.074 17 C -0.085 4.085 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.044 4.044 21 C -0.162 4.162 22 C 0.055 3.945 23 O -0.314 6.314 24 C -0.177 4.177 25 C -0.082 4.082 26 C -0.035 4.035 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.239 0.761 40 H 0.141 0.859 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.526 -6.491 -3.744 7.908 hybrid contribution 0.020 0.799 -0.581 0.988 sum -2.506 -5.692 -4.326 7.576 Atomic orbital electron populations 1.22628 0.83357 1.01676 0.98862 1.88138 1.17496 1.27967 1.95082 1.23082 0.96369 0.84418 0.98913 1.21470 0.89600 1.01587 0.87905 1.43084 1.56715 1.04157 1.10421 1.19353 1.37074 1.01603 0.88392 0.89493 1.25430 0.93880 0.99231 0.97576 1.69846 1.26889 1.24276 1.28541 0.86262 0.78725 0.80088 0.81341 1.19807 1.20820 1.19438 1.18072 0.81069 0.83512 0.86600 1.90633 1.55410 1.62075 1.38416 1.21189 0.97157 0.93053 0.96034 1.21812 0.94631 0.99340 0.92731 1.20782 0.99898 0.95445 0.96915 1.20851 0.97139 0.95909 0.99734 1.17753 0.97057 0.94678 0.94951 1.21080 0.97657 0.96315 1.01110 1.18114 0.94669 0.87983 0.93728 1.84816 1.61317 1.14351 1.70870 1.21086 1.02198 0.98042 0.96386 1.21342 0.94210 0.93350 0.99314 1.18974 0.96219 0.94104 0.94249 0.90552 0.95140 0.94938 0.94332 0.93329 0.91514 0.86799 0.91741 0.83045 0.86205 0.86297 0.85571 0.76090 0.85879 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.76 9.71 -39.14 -0.38 -8.14 16 3 C 0.05 1.01 6.27 37.16 0.23 1.24 16 4 C 0.12 2.71 5.46 -4.04 -0.02 2.69 16 5 N -0.43 -10.38 2.45 -116.07 -0.28 -10.67 16 6 C -0.34 -8.06 6.21 -15.02 -0.09 -8.15 16 7 H 0.09 2.11 7.22 -52.49 -0.38 1.73 16 8 C 0.05 1.06 4.97 -17.45 -0.09 0.97 16 9 N -0.86 -20.96 11.55 55.50 0.64 -20.32 16 10 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 14 C 0.52 12.78 6.71 -12.57 -0.08 12.69 16 15 O -0.58 -15.25 13.79 1.32 0.02 -15.23 16 16 C -0.07 -1.58 5.39 -102.75 -0.55 -2.14 16 17 C -0.07 -1.34 8.11 -39.11 -0.32 -1.66 16 18 C -0.11 -1.88 9.88 -40.14 -0.40 -2.28 16 19 C -0.12 -1.86 9.71 -39.47 -0.38 -2.24 16 20 C -0.04 -0.78 5.74 -106.88 -0.61 -1.39 16 21 C -0.14 -2.20 9.69 -39.32 -0.38 -2.58 16 22 C 0.10 1.52 6.65 -39.59 -0.26 1.26 16 23 O -0.50 -6.48 13.47 -19.40 -0.26 -6.75 16 24 C -0.16 -2.62 9.89 -39.74 -0.39 -3.02 16 25 C -0.06 -1.25 9.21 -39.63 -0.37 -1.62 16 26 C -0.03 -0.70 5.90 -104.74 -0.62 -1.32 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.60 7.39 -51.93 -0.38 1.22 16 33 H 0.11 2.68 5.71 -51.93 -0.30 2.38 16 34 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 35 H 0.15 3.31 6.47 -52.49 -0.34 2.97 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 38 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.38 2.97 9.06 45.56 0.41 3.39 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.15 3.20 6.05 -52.48 -0.32 2.88 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -29.41 345.80 -7.55 -36.97 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.24 Total: 11.47 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.22 Total: -5.92 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.36 Total: -30.99 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.62 Total: -30.12 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.41 -7.55 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.684 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds