Wall clock time and date at job start Tue Mar 31 2020 11:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00038 * 2 1 4 4 C 1.53008 * 109.46895 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46723 * 65.00261 * 4 3 2 6 6 C 1.36800 * 120.00312 * 86.41784 * 5 4 3 7 7 H 1.07989 * 120.00304 * 222.16676 * 6 5 4 8 8 C 1.39087 * 119.99686 * 42.16547 * 6 5 4 9 9 N 1.31342 * 120.00067 * 18.17556 * 8 6 5 10 10 Si 1.86801 * 119.99550 * 198.17748 * 8 6 5 11 11 H 1.48498 * 109.47413 * 60.00331 * 10 8 6 12 12 H 1.48505 * 109.46772 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47058 * 299.99690 * 10 8 6 14 14 C 1.34770 * 119.99608 * 266.41156 * 5 4 3 15 15 O 1.21653 * 120.00526 * 4.88919 * 14 5 4 16 16 C 1.47315 * 119.99851 * 184.88429 * 14 5 4 17 17 C 1.38982 * 120.69698 * 39.56047 * 16 14 5 18 18 C 1.38775 * 120.57617 * 179.68026 * 17 16 14 19 19 C 1.36146 * 121.83977 * 0.63549 * 18 17 16 20 20 C 1.40520 * 120.67922 * 359.66878 * 19 18 17 21 21 C 1.40477 * 121.28751 * 180.02562 * 20 19 18 22 22 C 1.36624 * 119.60258 * 179.97438 * 21 20 19 23 23 O 1.35891 * 119.56435 * 180.02562 * 22 21 20 24 24 C 1.39764 * 120.87788 * 0.02562 * 22 21 20 25 25 C 1.36223 * 120.85477 * 359.97213 * 24 22 21 26 26 C 1.40036 * 119.69179 * 0.04828 * 25 24 22 27 27 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46997 * 299.99918 * 1 2 3 29 29 H 1.08997 * 109.47156 * 59.99907 * 1 2 3 30 30 H 1.09005 * 109.47368 * 60.00127 * 3 2 1 31 31 H 1.09000 * 109.47362 * 299.99969 * 3 2 1 32 32 H 1.09000 * 109.47091 * 304.99988 * 4 3 2 33 33 H 1.09005 * 109.46645 * 185.00128 * 4 3 2 34 34 H 0.97001 * 119.99727 * 180.02562 * 9 8 6 35 35 H 1.07999 * 119.70550 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.08112 * 180.30707 * 18 17 16 37 37 H 1.08008 * 119.66509 * 179.69747 * 19 18 17 38 38 H 1.08005 * 120.20406 * 0.02562 * 21 20 19 39 39 H 0.96702 * 113.99828 * 89.99690 * 23 22 21 40 40 H 1.08000 * 119.57305 * 180.02562 * 24 22 21 41 41 H 1.08005 * 120.15273 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1971 1.3373 -2.3575 7 1 3.8620 1.0005 -3.3273 8 6 4.8528 2.5576 -2.2335 9 7 5.5669 2.8135 -1.1613 10 14 4.7178 3.8326 -3.5921 11 1 3.2933 4.2082 -3.7788 12 1 5.5021 5.0375 -3.2199 13 1 5.2504 3.2661 -4.8573 14 6 4.1654 -0.7692 -1.3120 15 8 3.8849 -1.4678 -0.3564 16 6 4.7113 -1.3804 -2.5362 17 6 5.7282 -0.7558 -3.2484 18 6 6.2451 -1.3371 -4.3977 19 6 5.7756 -2.5217 -4.8769 20 6 4.7444 -3.2062 -4.2116 21 6 4.2506 -4.4295 -4.6945 22 6 3.2474 -5.0658 -4.0199 23 8 2.7707 -6.2494 -4.4874 24 6 2.7047 -4.5157 -2.8553 25 6 3.1629 -3.3311 -2.3629 26 6 4.1902 -2.6532 -3.0309 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 6.0238 3.6648 -1.0747 35 1 6.1227 0.1880 -2.9018 36 1 7.0385 -0.8330 -4.9296 37 1 6.2004 -2.9401 -5.7775 38 1 4.6622 -4.8648 -5.5932 39 1 3.2324 -7.0245 -4.1391 40 1 1.9125 -5.0370 -2.3385 41 1 2.7356 -2.9165 -1.4618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601625002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:18 Heat of formation + Delta-G solvation = -86.356346 kcal Electronic energy + Delta-G solvation = -26649.879118 eV Core-core repulsion = 22880.693089 eV Total energy + Delta-G solvation = -3769.186028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47505 -40.26669 -38.84400 -38.33645 -36.75708 -36.01131 -33.54571 -33.39946 -31.18085 -30.60474 -29.43700 -27.22959 -26.85557 -25.03229 -23.96300 -23.66186 -22.78382 -21.04082 -19.71082 -18.98027 -18.19501 -17.72215 -17.34323 -17.05071 -16.87740 -16.70855 -16.21071 -16.08656 -15.84923 -15.49489 -15.07554 -15.04986 -14.48015 -14.30563 -14.12507 -13.95540 -13.49277 -13.35892 -13.22221 -13.16062 -12.73454 -12.67964 -12.48488 -12.35137 -12.16600 -12.05403 -11.89916 -11.87171 -11.46510 -10.97709 -10.72047 -10.55378 -10.23739 -9.45752 -9.34984 -8.72181 -8.29070 -6.06852 -0.51529 0.06702 0.90488 1.45288 1.49253 1.56746 1.95126 2.28924 2.32004 2.90001 2.97165 3.06741 3.26538 3.34001 3.82789 3.96959 4.01392 4.19728 4.25878 4.33937 4.36835 4.39735 4.43392 4.50113 4.54457 4.59469 4.65846 4.76315 4.87301 5.01245 5.05005 5.19425 5.21469 5.24554 5.31517 5.45340 5.47597 5.62761 5.74576 5.85519 6.04248 6.07263 6.36395 6.47803 6.89570 7.13726 7.58374 8.06702 8.72923 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.005586 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.486712 B = 5011.267085 C = 6608.033783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.118 3.882 5 N -0.435 5.435 6 C -0.343 4.343 7 H 0.079 0.921 8 C 0.016 3.984 9 N -0.888 5.888 10 Si 0.972 3.028 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.261 1.261 14 C 0.506 3.494 15 O -0.613 6.613 16 C -0.118 4.118 17 C -0.065 4.065 18 C -0.124 4.124 19 C -0.090 4.090 20 C -0.058 4.058 21 C -0.128 4.128 22 C 0.104 3.896 23 O -0.502 6.502 24 C -0.145 4.145 25 C -0.099 4.099 26 C -0.053 4.053 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.275 0.725 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.410 0.590 40 H 0.140 0.860 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -7.910 -7.257 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.018 4.018 4 C -0.006 4.006 5 N -0.152 5.152 6 C -0.471 4.471 7 H 0.097 0.903 8 C -0.188 4.188 9 N -0.524 5.524 10 Si 0.795 3.205 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.186 1.186 14 C 0.297 3.703 15 O -0.500 6.500 16 C -0.121 4.121 17 C -0.084 4.084 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.059 4.059 21 C -0.147 4.147 22 C 0.060 3.940 23 O -0.316 6.316 24 C -0.163 4.163 25 C -0.117 4.117 26 C -0.054 4.054 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.186 0.814 38 H 0.183 0.817 39 H 0.269 0.731 40 H 0.158 0.842 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.510 -7.868 -6.981 10.814 hybrid contribution -0.029 1.023 0.412 1.104 sum -2.539 -6.845 -6.569 9.821 Atomic orbital electron populations 1.22849 0.80729 1.03003 1.00363 1.88094 1.20481 1.28325 1.95363 1.22906 0.94336 0.84561 0.99952 1.21417 0.91871 1.00314 0.86999 1.43282 1.56782 1.04392 1.10780 1.19353 1.37646 1.02012 0.88069 0.90302 1.26082 0.93001 1.00268 0.99478 1.69936 1.27527 1.24774 1.30184 0.85311 0.78509 0.77652 0.78987 1.19771 1.20484 1.18583 1.18641 0.80638 0.83574 0.87476 1.90572 1.56881 1.62717 1.39853 1.21095 0.99453 0.95042 0.96473 1.21703 0.94274 0.98453 0.93957 1.21031 1.00929 0.96357 0.95832 1.21358 0.94925 0.94476 1.00018 1.18076 0.97775 0.95816 0.94194 1.21422 0.96721 0.94809 1.01699 1.18053 0.94205 0.88970 0.92795 1.84767 1.61757 1.14390 1.70656 1.21301 1.01725 0.96581 0.96703 1.21096 0.95888 0.95277 0.99406 1.19137 0.96864 0.93628 0.95728 0.89426 0.92714 0.94186 0.91456 0.93797 0.93823 0.87636 0.91508 0.85637 0.82923 0.81408 0.81694 0.73069 0.84218 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.40 -17.73 9.71 -145.24 -1.41 -19.14 16 3 C 0.06 2.51 6.27 71.98 0.45 2.97 16 4 C 0.12 5.77 5.46 86.38 0.47 6.24 16 5 N -0.44 -22.63 2.45 -639.39 -1.56 -24.20 16 6 C -0.34 -17.21 6.21 84.12 0.52 -16.69 16 7 H 0.08 4.01 7.22 -2.92 -0.02 3.99 16 8 C 0.02 0.76 4.97 84.97 0.42 1.18 16 9 N -0.89 -44.80 11.55 21.69 0.25 -44.55 16 10 Si 0.97 37.91 29.59 68.60 2.03 39.94 16 11 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 12 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 13 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 14 C 0.51 26.90 6.71 86.63 0.58 27.48 16 15 O -0.61 -35.03 13.79 -0.46 -0.01 -35.04 16 16 C -0.12 -5.51 5.39 -18.65 -0.10 -5.61 16 17 C -0.06 -2.70 8.11 22.58 0.18 -2.52 16 18 C -0.12 -3.90 9.88 21.91 0.22 -3.68 16 19 C -0.09 -2.49 9.71 22.34 0.22 -2.27 16 20 C -0.06 -1.91 5.74 -21.33 -0.12 -2.03 16 21 C -0.13 -3.40 9.69 22.44 0.22 -3.19 16 22 C 0.10 2.86 6.65 22.26 0.15 3.00 16 23 O -0.50 -10.71 13.47 -92.32 -1.24 -11.96 16 24 C -0.14 -4.66 9.89 22.17 0.22 -4.44 16 25 C -0.10 -4.01 9.21 22.24 0.20 -3.80 16 26 C -0.05 -2.19 5.90 -19.94 -0.12 -2.30 16 27 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 28 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 2.28 7.39 -2.39 -0.02 2.26 16 33 H 0.11 5.28 5.71 -2.38 -0.01 5.26 16 34 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 35 H 0.13 5.79 6.47 -2.91 -0.02 5.77 16 36 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.41 4.40 9.06 -74.06 -0.67 3.73 16 40 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.12 5.43 6.05 -2.91 -0.02 5.41 16 Total: -1.00 -68.93 345.80 3.22 -65.71 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.40 Total: 32.79 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.76 Total: -3.56 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.31 Total: -68.75 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -2.66 Total: -66.13 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -68.93 3.22 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds