Wall clock time and date at job start Tue Mar 31 2020 10:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00426 * 2 1 4 4 C 1.50694 * 109.46994 * 270.00314 * 3 2 1 5 5 C 1.41383 * 126.58345 * 89.99623 * 4 3 2 6 6 C 1.34516 * 106.84132 * 179.97438 * 5 4 3 7 7 O 1.34299 * 108.42337 * 0.02562 * 6 5 4 8 8 C 1.34306 * 109.47552 * 359.76604 * 7 6 5 9 9 C 1.34783 * 119.99988 * 179.97438 * 2 1 3 10 10 O 1.21284 * 119.99976 * 180.02562 * 9 2 1 11 11 C 1.50699 * 120.00059 * 359.97438 * 9 2 1 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 2 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08998 * 109.47741 * 270.00060 * 1 2 3 28 28 H 1.09001 * 109.47144 * 30.00541 * 1 2 3 29 29 H 1.09003 * 109.47209 * 149.99639 * 1 2 3 30 30 H 1.09002 * 109.46470 * 29.99242 * 3 2 1 31 31 H 1.08991 * 109.47749 * 149.99605 * 3 2 1 32 32 H 1.07995 * 126.58228 * 359.92658 * 5 4 3 33 33 H 1.08000 * 125.79030 * 179.97438 * 6 5 4 34 34 H 1.08004 * 125.79434 * 180.24250 * 8 7 6 35 35 H 1.09004 * 109.46756 * 60.00007 * 11 9 2 36 36 H 1.08998 * 109.46908 * 300.00650 * 11 9 2 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 6 1.6059 2.5146 -2.2152 6 6 2.2106 2.6534 -3.4087 7 8 3.3681 1.9729 -3.3797 8 6 3.5200 1.3989 -2.1750 9 6 2.1388 -1.1673 0.0005 10 8 3.3517 -1.1673 0.0010 11 6 1.3853 -2.4724 0.0017 12 6 2.3646 -3.6178 0.0027 13 6 2.8140 -4.1436 -1.1952 14 6 3.7130 -5.1943 -1.1985 15 6 4.1700 -5.7177 -0.0047 16 6 3.7165 -5.1958 1.1994 17 8 4.1593 -5.7120 2.3743 18 6 4.9434 -6.8067 2.3051 19 1 5.2589 -7.1850 1.3440 20 6 5.3445 -7.4467 3.4678 21 7 4.9597 -6.9862 4.6385 22 14 6.4302 -8.9638 3.3719 23 1 6.7205 -9.2756 1.9493 24 1 7.7036 -8.7074 4.0917 25 1 5.7302 -10.1139 3.9984 26 6 2.8128 -4.1409 1.1993 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6083 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 0.6580 2.9403 -1.9206 33 1 1.8295 3.2158 -4.2482 34 1 4.3590 0.7936 -1.8650 35 1 0.7583 -2.5306 -0.8881 36 1 0.7590 -2.5294 0.8919 37 1 2.4619 -3.7327 -2.1299 38 1 4.0616 -5.6030 -2.1353 39 1 4.8761 -6.5349 -0.0079 40 1 5.2401 -7.4341 5.4518 41 1 2.4613 -3.7301 2.1343 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760397030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:11 Heat of formation + Delta-G solvation = -14.038924 kcal Electronic energy + Delta-G solvation = -25097.346393 eV Core-core repulsion = 21331.296284 eV Total energy + Delta-G solvation = -3766.050110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71748 -39.93290 -38.77238 -36.56033 -35.72419 -33.49159 -32.32053 -31.89925 -30.17677 -29.14887 -27.82273 -27.10543 -25.58576 -25.01741 -21.78008 -21.63961 -21.23839 -20.49747 -19.19857 -17.69300 -17.56626 -16.92421 -16.87247 -16.32851 -15.74397 -15.59140 -15.01194 -14.82091 -14.37553 -14.32856 -13.73152 -13.58632 -13.39581 -13.16745 -13.08088 -12.98525 -12.73314 -12.65280 -12.42406 -12.32444 -11.77157 -11.57754 -11.46693 -11.22716 -10.78958 -10.70025 -10.55532 -10.38567 -10.11359 -9.61240 -9.27277 -8.84048 -8.78360 -8.68448 -7.99405 -7.15124 -6.38784 -3.97564 1.59269 2.11608 2.31019 2.46422 2.78516 2.99872 3.15556 3.17452 3.23130 3.23911 4.01615 4.46579 4.61856 4.64341 4.85873 4.91948 4.95023 5.04404 5.16384 5.17204 5.27559 5.29980 5.45840 5.47969 5.54496 5.59451 5.73902 5.80963 5.85655 5.99108 6.00014 6.24162 6.28294 6.39456 6.41322 6.72331 6.94506 6.98486 7.13934 7.33078 7.33850 7.43712 7.50662 7.89601 8.06714 8.30045 9.07274 9.78849 10.79735 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002603 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.046722 B =10755.196449 C =11017.428873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.185 3.815 4 C -0.206 4.206 5 C -0.203 4.203 6 C -0.051 4.051 7 O -0.179 6.179 8 C -0.009 4.009 9 C 0.517 3.483 10 O -0.518 6.518 11 C -0.092 4.092 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.174 4.174 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.199 0.801 34 H 0.206 0.794 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 17.109 -12.738 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.063 3.937 4 C -0.208 4.208 5 C -0.223 4.223 6 C -0.118 4.118 7 O -0.074 6.074 8 C -0.077 4.077 9 C 0.305 3.695 10 O -0.392 6.392 11 C -0.132 4.132 12 C -0.033 4.033 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.102 3.898 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.193 4.193 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.163 0.837 33 H 0.216 0.784 34 H 0.222 0.778 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.723 17.079 -12.471 23.276 hybrid contribution 0.245 -0.663 -0.022 0.707 sum -9.478 16.416 -12.493 22.702 Atomic orbital electron populations 1.21783 0.79606 1.03176 1.01815 1.47962 1.06861 1.05583 1.75166 1.19617 0.98453 0.84765 0.90897 1.20822 0.96518 1.04246 0.99249 1.21693 1.02020 1.04125 0.94415 1.23980 0.86493 1.00892 1.00424 1.84099 1.36912 1.52337 1.34023 1.24180 1.01469 0.99728 0.82367 1.20786 0.88284 0.84920 0.75498 1.90721 1.13850 1.87005 1.47633 1.20622 0.97812 0.90476 1.04255 1.18677 0.96938 0.94611 0.93103 1.20337 1.04071 1.01081 0.96009 1.20670 0.96179 0.95677 0.96784 1.21171 1.06402 1.05309 0.92126 1.19272 0.91593 0.92402 0.86558 1.83977 1.58869 1.40847 1.24737 1.21363 1.27199 1.03355 0.94670 0.89095 1.25271 0.98097 0.99006 0.94211 1.70049 1.43076 1.39510 0.97405 0.85659 0.79082 0.79971 0.78771 1.19133 1.20199 1.20194 1.19937 1.02243 0.99979 0.97157 0.92427 0.91321 0.90853 0.89796 0.88956 0.83710 0.78397 0.77787 0.88553 0.88325 0.88071 0.87534 0.85644 0.92179 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.24 59.84 0.61 1.19 16 2 N -0.62 -6.92 2.86 -182.96 -0.52 -7.45 16 3 C 0.19 1.94 5.92 -5.20 -0.03 1.91 16 4 C -0.21 -2.21 5.75 -104.74 -0.60 -2.82 16 5 C -0.20 -1.79 10.87 -39.70 -0.43 -2.23 16 6 C -0.05 -0.43 12.09 29.42 0.36 -0.08 16 7 O -0.18 -2.02 10.65 5.71 0.06 -1.95 16 8 C -0.01 -0.10 12.01 29.42 0.35 0.25 16 9 C 0.52 7.69 7.67 -10.98 -0.08 7.61 16 10 O -0.52 -9.90 15.61 5.55 0.09 -9.81 16 11 C -0.09 -1.27 4.38 -29.04 -0.13 -1.40 16 12 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 13 C -0.20 -3.63 9.70 -39.53 -0.38 -4.01 16 14 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 15 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 16 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 19 H 0.09 2.44 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 22 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 30 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.21 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.10 1.07 7.34 -51.93 -0.38 0.68 16 36 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -35.60 357.94 -6.26 -41.86 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.02 Total: 5.16 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -2.00 Total: -18.71 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.24 Total: -32.62 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.15 Total: -17.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.60 -6.26 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760397030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.824 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds