Wall clock time and date at job start Tue Mar 31 2020 10:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00426 * 2 1 4 4 C 1.50694 * 109.46994 * 270.00314 * 3 2 1 5 5 C 1.41383 * 126.58345 * 89.99623 * 4 3 2 6 6 C 1.34516 * 106.84132 * 179.97438 * 5 4 3 7 7 O 1.34299 * 108.42337 * 0.02562 * 6 5 4 8 8 C 1.34306 * 109.47552 * 359.76604 * 7 6 5 9 9 C 1.34783 * 119.99988 * 179.97438 * 2 1 3 10 10 O 1.21284 * 119.99976 * 180.02562 * 9 2 1 11 11 C 1.50699 * 120.00059 * 359.97438 * 9 2 1 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 2 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08998 * 109.47741 * 270.00060 * 1 2 3 28 28 H 1.09001 * 109.47144 * 30.00541 * 1 2 3 29 29 H 1.09003 * 109.47209 * 149.99639 * 1 2 3 30 30 H 1.09002 * 109.46470 * 29.99242 * 3 2 1 31 31 H 1.08991 * 109.47749 * 149.99605 * 3 2 1 32 32 H 1.07995 * 126.58228 * 359.92658 * 5 4 3 33 33 H 1.08000 * 125.79030 * 179.97438 * 6 5 4 34 34 H 1.08004 * 125.79434 * 180.24250 * 8 7 6 35 35 H 1.09004 * 109.46756 * 60.00007 * 11 9 2 36 36 H 1.08998 * 109.46908 * 300.00650 * 11 9 2 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 6 1.6059 2.5146 -2.2152 6 6 2.2106 2.6534 -3.4087 7 8 3.3681 1.9729 -3.3797 8 6 3.5200 1.3989 -2.1750 9 6 2.1388 -1.1673 0.0005 10 8 3.3517 -1.1673 0.0010 11 6 1.3853 -2.4724 0.0017 12 6 2.3646 -3.6178 0.0027 13 6 2.8140 -4.1436 -1.1952 14 6 3.7130 -5.1943 -1.1985 15 6 4.1700 -5.7177 -0.0047 16 6 3.7165 -5.1958 1.1994 17 8 4.1593 -5.7120 2.3743 18 6 4.9434 -6.8067 2.3051 19 1 5.2589 -7.1850 1.3440 20 6 5.3445 -7.4467 3.4678 21 7 4.9597 -6.9862 4.6385 22 14 6.4302 -8.9638 3.3719 23 1 6.7205 -9.2756 1.9493 24 1 7.7036 -8.7074 4.0917 25 1 5.7302 -10.1139 3.9984 26 6 2.8128 -4.1409 1.1993 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6083 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 0.6580 2.9403 -1.9206 33 1 1.8295 3.2158 -4.2482 34 1 4.3590 0.7936 -1.8650 35 1 0.7583 -2.5306 -0.8881 36 1 0.7590 -2.5294 0.8919 37 1 2.4619 -3.7327 -2.1299 38 1 4.0616 -5.6030 -2.1353 39 1 4.8761 -6.5349 -0.0079 40 1 5.2401 -7.4341 5.4518 41 1 2.4613 -3.7301 2.1343 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760397030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:10 Heat of formation + Delta-G solvation = -37.011748 kcal Electronic energy + Delta-G solvation = -25098.342570 eV Core-core repulsion = 21331.296284 eV Total energy + Delta-G solvation = -3767.046286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.47388 -41.18772 -40.43279 -38.26739 -36.79519 -34.44034 -34.25570 -33.31208 -31.06087 -30.76191 -28.97946 -28.01139 -27.32664 -26.33453 -23.29214 -22.78381 -22.44878 -21.52904 -20.29830 -19.41136 -18.73974 -18.48311 -17.90436 -17.23482 -16.83017 -16.69011 -16.58728 -16.09702 -16.07696 -15.52282 -15.47820 -15.04440 -14.55504 -14.38564 -14.12968 -14.01850 -13.90810 -13.66918 -13.59091 -13.40146 -13.14775 -12.96891 -12.75010 -12.50914 -12.43400 -12.25686 -12.22948 -12.08165 -11.20314 -11.06374 -10.81512 -10.59925 -9.71719 -9.63984 -9.45969 -8.98066 -8.47323 -6.15773 0.51296 0.75046 0.82798 1.33835 1.42564 1.52494 1.52700 1.69119 2.17386 2.28204 2.32920 2.84115 3.16619 3.43628 3.70152 3.85136 3.94948 4.04244 4.09534 4.18299 4.28796 4.35569 4.43267 4.52058 4.58074 4.60560 4.64892 4.72953 4.74477 4.87887 5.00331 5.05870 5.12538 5.13403 5.25473 5.30440 5.55621 5.61200 5.64792 5.72489 5.75264 6.02892 6.19286 6.22389 6.41515 6.97375 7.23303 7.79033 8.76586 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002603 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.046722 B =10755.196449 C =11017.428873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.183 3.817 4 C -0.206 4.206 5 C -0.206 4.206 6 C -0.047 4.047 7 O -0.195 6.195 8 C -0.041 4.041 9 C 0.511 3.489 10 O -0.575 6.575 11 C -0.089 4.089 12 C -0.024 4.024 13 C -0.181 4.181 14 C -0.073 4.073 15 C -0.247 4.247 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.265 1.265 26 C -0.191 4.191 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.174 0.826 33 H 0.237 0.763 34 H 0.190 0.810 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 18.392 -15.699 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.060 3.940 4 C -0.208 4.208 5 C -0.225 4.225 6 C -0.113 4.113 7 O -0.091 6.091 8 C -0.110 4.110 9 C 0.300 3.700 10 O -0.454 6.454 11 C -0.128 4.128 12 C -0.025 4.025 13 C -0.199 4.199 14 C -0.091 4.091 15 C -0.266 4.266 16 C 0.063 3.937 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.194 1.194 25 H -0.190 1.190 26 C -0.211 4.211 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.192 0.808 33 H 0.253 0.747 34 H 0.207 0.793 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.215 18.415 -15.479 26.980 hybrid contribution 0.795 -0.777 0.661 1.293 sum -11.421 17.639 -14.817 25.712 Atomic orbital electron populations 1.22130 0.76689 1.05073 1.03356 1.47999 1.08605 1.04602 1.73160 1.19704 0.97979 0.85187 0.91095 1.20949 0.96566 1.04183 0.99116 1.21996 1.02857 1.03717 0.93956 1.24829 0.85160 0.99693 1.01646 1.84085 1.38358 1.52883 1.33789 1.24091 1.02174 1.01363 0.83344 1.20952 0.87676 0.86196 0.75158 1.90716 1.16171 1.87842 1.50637 1.20721 0.96891 0.87891 1.07304 1.19191 0.96505 0.95048 0.91738 1.20925 1.02025 0.99469 0.97520 1.21109 0.95613 0.95521 0.96860 1.21284 1.06878 1.05673 0.92753 1.19860 0.93316 0.93916 0.86573 1.83936 1.60901 1.42190 1.27098 1.21861 1.27712 1.03826 0.95542 0.88280 1.26613 0.99565 1.02549 0.93419 1.70193 1.45600 1.41886 0.98401 0.84514 0.76800 0.75187 0.79567 1.17562 1.19373 1.19023 1.20196 1.02422 0.99752 0.98682 0.91055 0.89041 0.89454 0.86680 0.91627 0.80836 0.74693 0.79339 0.84468 0.86229 0.83969 0.83805 0.86466 0.91838 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.24 127.77 1.31 2.01 16 2 N -0.61 -12.08 2.86 -851.15 -2.43 -14.51 16 3 C 0.18 3.55 5.92 85.63 0.51 4.06 16 4 C -0.21 -4.09 5.75 -19.94 -0.11 -4.21 16 5 C -0.21 -2.93 10.87 22.19 0.24 -2.69 16 6 C -0.05 -0.66 12.09 66.97 0.81 0.15 16 7 O -0.20 -4.20 10.65 -2.48 -0.03 -4.23 16 8 C -0.04 -0.97 12.01 66.97 0.80 -0.16 16 9 C 0.51 14.41 7.67 87.66 0.67 15.08 16 10 O -0.57 -22.27 15.61 -3.04 -0.05 -22.32 16 11 C -0.09 -2.19 4.38 29.10 0.13 -2.06 16 12 C -0.02 -0.87 4.37 -19.88 -0.09 -0.96 16 13 C -0.18 -6.18 9.70 22.30 0.22 -5.96 16 14 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 15 C -0.25 -11.62 9.17 22.39 0.21 -11.41 16 16 C 0.11 6.07 6.65 22.58 0.15 6.22 16 17 O -0.23 -14.89 9.76 -22.74 -0.22 -15.11 16 18 C -0.41 -25.20 9.49 67.92 0.64 -24.56 16 19 H 0.10 5.59 5.21 -2.91 -0.02 5.58 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.40 13.67 21.61 0.30 -58.11 16 22 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 23 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.19 -8.80 9.65 22.39 0.22 -8.59 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 29 H 0.09 0.67 6.44 -2.39 -0.02 0.66 16 30 H 0.12 1.49 8.07 -2.39 -0.02 1.47 16 31 H 0.07 1.64 7.42 -2.39 -0.02 1.62 16 32 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.24 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.19 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.14 2.29 7.34 -2.38 -0.02 2.27 16 36 H 0.12 2.49 8.05 -2.39 -0.02 2.47 16 37 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -85.83 357.94 7.04 -78.80 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 1.05 Total: 25.60 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 6.39 Total: -36.59 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -2.14 Total: -72.61 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.30 Total: -41.66 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -85.83 7.04 -78.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760397030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.784 kcal (2) G-P(sol) polarization free energy of solvation -85.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds