Wall clock time and date at job start Tue Mar 31 2020 10:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35964 * 117.00142 * 2 1 4 4 C 1.38262 * 120.11804 * 359.97438 * 3 2 1 5 5 C 1.38772 * 120.67767 * 179.72750 * 4 3 2 6 6 C 1.36631 * 120.49013 * 359.97366 * 5 4 3 7 7 C 1.39774 * 119.81496 * 0.02562 * 6 5 4 8 8 C 1.46258 * 134.14632 * 180.02562 * 7 6 5 9 9 C 1.35817 * 106.08512 * 179.97438 * 8 7 6 10 10 C 1.46987 * 125.13902 * 180.02562 * 9 8 7 11 11 O 1.21660 * 120.00237 * 354.61390 * 10 9 8 12 12 N 1.34776 * 120.00322 * 174.60762 * 10 9 8 13 13 C 1.46502 * 120.00458 * 185.57332 * 12 10 9 14 14 C 1.52999 * 109.47016 * 185.19979 * 13 12 10 15 15 C 1.50706 * 115.55158 * 57.83989 * 14 13 12 16 16 H 1.07991 * 119.99798 * 264.63787 * 15 14 13 17 17 C 1.37872 * 119.99647 * 84.63878 * 15 14 13 18 18 N 1.31511 * 120.00502 * 1.96478 * 17 15 14 19 19 Si 1.86805 * 119.99974 * 181.96327 * 17 15 14 20 20 H 1.48501 * 109.46830 * 89.99747 * 19 17 15 21 21 H 1.48493 * 109.47315 * 210.00229 * 19 17 15 22 22 H 1.48503 * 109.46708 * 330.00067 * 19 17 15 23 23 C 1.52995 * 117.49671 * 272.16798 * 14 13 12 24 24 C 1.53001 * 117.49699 * 203.51236 * 14 13 12 25 25 O 1.34926 * 109.71979 * 359.97438 * 9 8 7 26 26 C 1.34779 * 110.84625 * 359.97438 * 25 9 8 27 27 H 1.09002 * 109.47242 * 59.99842 * 1 2 3 28 28 H 1.09002 * 109.47729 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47185 * 300.00411 * 1 2 3 30 30 H 1.07993 * 119.66560 * 359.75022 * 4 3 2 31 31 H 1.07998 * 119.75369 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.09089 * 180.02562 * 6 5 4 33 33 H 1.07998 * 126.96122 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99447 * 5.57365 * 12 10 9 35 35 H 1.09004 * 109.46762 * 305.19680 * 13 12 10 36 36 H 1.08999 * 109.46770 * 65.19799 * 13 12 10 37 37 H 0.97000 * 120.00585 * 185.01985 * 18 17 15 38 38 H 1.08998 * 117.49968 * 0.02562 * 23 14 13 39 39 H 1.09000 * 117.49880 * 145.02405 * 23 14 13 40 40 H 1.09001 * 117.50028 * 214.98127 * 24 14 13 41 41 H 1.09003 * 117.49870 * 359.97108 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2957 2.3726 -0.0005 5 6 1.9136 3.6151 0.0051 6 6 3.2765 3.7116 0.0119 7 6 4.0553 2.5509 0.0126 8 6 5.4944 2.2898 0.0192 9 6 5.6317 0.9386 0.0166 10 6 6.9130 0.2184 0.0219 11 8 7.9578 0.8350 -0.0697 12 7 6.9306 -1.1250 0.1284 13 6 8.2068 -1.8331 0.2566 14 6 7.9575 -3.3424 0.2295 15 6 7.2571 -3.8636 -0.9989 16 1 6.1862 -4.0029 -0.9916 17 6 7.9836 -4.1626 -2.1318 18 7 9.2919 -4.0298 -2.1282 19 14 7.1094 -4.7565 -3.6722 20 1 6.7445 -3.5897 -4.5152 21 1 8.0096 -5.6571 -4.4362 22 1 5.8791 -5.4948 -3.2895 23 6 7.6555 -4.0324 1.5612 24 6 9.0093 -4.2438 0.8791 25 8 4.4141 0.3573 0.0096 26 6 3.4386 1.2873 0.0079 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2174 2.3120 -0.0050 31 1 1.3127 4.5125 0.0051 32 1 3.7506 4.6819 0.0167 33 1 6.2873 3.0230 0.0250 34 1 6.0983 -1.6231 0.1201 35 1 8.8598 -1.5578 -0.5716 36 1 8.6806 -1.5599 1.1994 37 1 9.7960 -4.1697 -2.9451 38 1 7.6340 -3.4111 2.4565 39 1 6.9505 -4.8637 1.5488 40 1 9.1946 -5.2141 0.4181 41 1 9.8792 -3.7617 1.3252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797561984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:37 Heat of formation + Delta-G solvation = -35.704706 kcal Electronic energy + Delta-G solvation = -25468.593126 eV Core-core repulsion = 21701.603518 eV Total energy + Delta-G solvation = -3766.989608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62073 -40.83263 -40.29475 -38.52322 -37.95760 -35.17690 -34.00124 -33.52539 -31.48934 -30.49878 -28.59462 -27.99378 -27.26009 -24.61262 -23.83646 -22.95184 -22.45131 -21.60574 -21.23093 -19.53936 -18.86114 -18.48781 -17.93998 -17.69439 -16.89071 -16.73123 -16.59818 -16.50743 -16.01668 -15.95029 -15.74454 -15.04777 -14.68391 -14.46354 -14.33986 -14.07803 -13.82942 -13.51178 -13.30727 -13.23213 -12.95457 -12.87130 -12.47894 -12.40186 -12.24753 -12.23274 -12.04773 -11.66375 -11.34523 -11.00019 -10.93649 -10.45692 -10.23050 -9.95923 -9.69471 -8.92310 -8.13687 -6.26572 -0.52747 0.27980 0.74328 1.33524 1.38014 1.40499 1.48416 2.00790 2.12198 2.23665 2.39869 2.63024 3.14704 3.30655 3.51990 3.66170 3.83935 3.93196 4.07541 4.20281 4.26901 4.30428 4.39266 4.41737 4.49381 4.56852 4.62632 4.65546 4.75175 4.92346 4.96657 5.00293 5.07338 5.25372 5.26628 5.34882 5.41502 5.50633 5.58617 5.66404 5.73941 5.74980 6.33017 6.34447 6.50160 6.80175 6.97908 7.43164 8.94037 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003641 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.149352 B = 7687.749518 C = 8484.489547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.343 6.343 3 C 0.119 3.881 4 C -0.170 4.170 5 C -0.088 4.088 6 C -0.100 4.100 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.034 4.034 10 C 0.587 3.413 11 O -0.559 6.559 12 N -0.683 5.683 13 C 0.174 3.826 14 C -0.003 4.003 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.029 3.971 18 N -0.903 5.903 19 Si 0.943 3.057 20 H -0.284 1.284 21 H -0.284 1.284 22 H -0.265 1.265 23 C -0.181 4.181 24 C -0.147 4.147 25 O -0.193 6.193 26 C 0.007 3.993 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.411 0.589 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 15.157 5.802 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C 0.074 3.926 4 C -0.189 4.189 5 C -0.106 4.106 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.084 4.084 10 C 0.373 3.627 11 O -0.441 6.441 12 N -0.330 5.330 13 C 0.051 3.949 14 C -0.003 4.003 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.172 4.172 18 N -0.541 5.541 19 Si 0.770 3.230 20 H -0.210 1.210 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.218 4.218 24 C -0.185 4.185 25 O -0.095 6.095 26 C -0.041 4.041 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.194 0.806 32 H 0.178 0.822 33 H 0.205 0.795 34 H 0.247 0.753 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.640 14.934 5.665 24.547 hybrid contribution -0.219 -0.897 -1.117 1.450 sum -18.859 14.036 4.548 23.945 Atomic orbital electron populations 1.23443 0.75483 1.05760 1.03059 1.86165 1.24350 1.26446 1.88835 1.18112 0.86100 0.86998 1.01395 1.21492 1.01527 0.90110 1.05749 1.21067 0.93872 0.98204 0.97418 1.20689 0.93789 0.96765 1.00610 1.19957 0.92101 0.93743 1.05983 1.22983 0.95762 0.93767 1.00951 1.21939 0.83484 0.93268 1.09719 1.16963 0.85772 0.82495 0.77479 1.90810 1.31792 1.68323 1.53189 1.45856 1.11657 1.05354 1.70099 1.20787 0.83449 0.92011 0.98681 1.19065 1.00818 0.88576 0.91861 1.20620 0.93211 1.43547 0.96938 0.92532 1.25621 0.95265 0.95070 1.01257 1.70084 1.06374 1.49753 1.27850 0.85779 0.78850 0.78154 0.80256 1.20980 1.20942 1.18973 1.23051 0.99177 1.03534 0.96055 1.22394 0.91697 1.01025 1.03401 1.84060 1.13089 1.35853 1.76529 1.19522 0.88501 0.87695 1.08397 0.90740 0.86999 0.90482 0.80695 0.80576 0.82161 0.79545 0.75299 0.94198 0.92823 0.93118 0.89043 0.89912 0.91659 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.62 10.50 -93.14 -0.98 -9.60 16 3 C 0.12 2.96 6.70 22.57 0.15 3.11 16 4 C -0.17 -2.63 9.03 22.40 0.20 -2.42 16 5 C -0.09 -1.13 9.97 22.02 0.22 -0.91 16 6 C -0.10 -1.75 10.05 22.27 0.22 -1.53 16 7 C -0.12 -3.09 6.38 -20.24 -0.13 -3.22 16 8 C -0.11 -3.41 10.81 23.79 0.26 -3.16 16 9 C -0.03 -1.23 7.07 24.00 0.17 -1.06 16 10 C 0.59 24.61 7.79 86.54 0.67 25.28 16 11 O -0.56 -25.94 16.81 -4.22 -0.07 -26.01 16 12 N -0.68 -29.32 5.37 -466.78 -2.51 -31.82 16 13 C 0.17 8.14 5.57 86.38 0.48 8.62 16 14 C 0.00 -0.12 1.51 -52.93 -0.08 -0.20 16 15 C -0.51 -26.92 8.38 25.60 0.21 -26.70 16 16 H 0.06 2.98 7.81 -2.92 -0.02 2.96 16 17 C 0.03 1.58 5.43 84.65 0.46 2.04 16 18 N -0.90 -51.79 12.72 21.44 0.27 -51.52 16 19 Si 0.94 43.91 29.54 68.60 2.03 45.93 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.18 -7.44 9.94 30.62 0.30 -7.14 16 24 C -0.15 -6.76 9.26 30.62 0.28 -6.48 16 25 O -0.19 -7.06 10.29 -13.42 -0.14 -7.20 16 26 C 0.01 0.21 7.35 23.14 0.17 0.38 16 27 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 30 H 0.18 1.36 6.26 -2.91 -0.02 1.34 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.41 17.10 7.97 -92.70 -0.74 16.36 16 35 H 0.04 2.15 8.09 -2.38 -0.02 2.13 16 36 H 0.05 2.34 8.11 -2.39 -0.02 2.32 16 37 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 38 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -70.50 358.37 3.65 -66.85 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.33 Total: 25.43 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.71 Total: -12.07 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.23 Total: -83.35 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.19 Total: -42.80 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.50 3.65 -66.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.150 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds