Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00430 * 2 1 4 4 O 1.20835 * 119.99412 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00614 * 180.02562 * 3 2 1 6 6 H 1.08994 * 115.51845 * 34.58173 * 5 3 2 7 7 C 1.53004 * 117.44456 * 180.02562 * 5 3 2 8 8 H 1.09000 * 119.53643 * 354.27581 * 7 5 3 9 9 C 1.54385 * 118.12133 * 199.18972 * 7 5 3 10 10 N 1.48144 * 104.61576 * 270.78851 * 9 7 5 11 11 C 1.34777 * 127.83357 * 219.58649 * 10 9 7 12 12 O 1.21555 * 119.99721 * 173.87211 * 11 10 9 13 13 C 1.47886 * 120.00603 * 353.86924 * 11 10 9 14 14 C 1.39927 * 120.02001 * 335.18630 * 13 11 10 15 15 C 1.38330 * 120.35408 * 179.73602 * 14 13 11 16 16 C 1.37751 * 120.41226 * 0.56090 * 15 14 13 17 17 C 1.40754 * 120.04092 * 359.69727 * 16 15 14 18 18 C 1.41441 * 120.17912 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99810 * 34.91270 * 18 17 16 20 20 C 1.39936 * 119.99739 * 214.91193 * 18 17 16 21 21 N 1.30825 * 120.00210 * 355.23357 * 20 18 17 22 22 Si 1.86797 * 119.99886 * 175.23072 * 20 18 17 23 23 H 1.48502 * 109.47177 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47225 * 120.00122 * 22 20 18 25 25 H 1.48499 * 109.47206 * 240.00156 * 22 20 18 26 26 C 1.38991 * 120.02932 * 155.45169 * 13 11 10 27 27 C 1.48147 * 104.32613 * 39.58622 * 10 9 7 28 28 C 1.54388 * 104.71834 * 320.35692 * 27 10 9 29 29 H 1.09001 * 117.61485 * 244.84162 * 28 27 10 30 30 H 1.08997 * 109.47293 * 299.99848 * 1 2 3 31 31 H 1.08997 * 109.47502 * 59.99991 * 1 2 3 32 32 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 33 33 H 1.09001 * 110.40694 * 152.00190 * 9 7 5 34 34 H 1.09000 * 110.40907 * 29.57116 * 9 7 5 35 35 H 1.07993 * 119.82167 * 359.97438 * 14 13 11 36 36 H 1.07996 * 119.79560 * 180.25217 * 15 14 13 37 37 H 1.08000 * 119.97997 * 179.71717 * 16 15 14 38 38 H 0.97001 * 119.99977 * 179.97438 * 21 20 18 39 39 H 1.08004 * 120.19729 * 359.96707 * 26 13 11 40 40 H 1.09001 * 110.40487 * 79.20026 * 27 10 9 41 41 H 1.08999 * 110.40521 * 201.51036 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0774 0.4909 -0.5592 7 6 4.1994 2.6678 0.0001 8 1 3.5626 3.5475 -0.0937 9 6 5.6710 2.7984 -0.4480 10 7 6.4576 2.6148 0.7938 11 6 7.5666 3.2787 1.1757 12 8 8.0377 3.0900 2.2803 13 6 8.2103 4.2367 0.2511 14 6 8.0352 4.1015 -1.1305 15 6 8.6297 4.9968 -2.0014 16 6 9.4100 6.0247 -1.5197 17 6 9.6020 6.1734 -0.1332 18 6 10.4022 7.2281 0.3647 19 1 10.4073 8.1848 -0.1362 20 6 11.1873 7.0317 1.5063 21 7 11.1109 5.9051 2.1669 22 14 12.3444 8.3782 2.0870 23 1 12.2443 9.5448 1.1736 24 1 11.9698 8.7937 3.4625 25 1 13.7386 7.8670 2.0867 26 6 8.9941 5.2686 0.7535 27 6 5.7487 1.5358 1.5205 28 6 4.2499 1.8339 1.3008 29 1 3.6529 2.0934 2.1750 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 5.8533 3.7864 -0.8708 34 1 5.9180 2.0225 -1.1726 35 1 7.4296 3.2961 -1.5189 36 1 8.4852 4.8864 -3.0660 37 1 9.8746 6.7170 -2.2061 38 1 11.6554 5.7688 2.9580 39 1 9.1350 5.3745 1.8191 40 1 6.0079 0.5627 1.1034 41 1 5.9914 1.5699 2.5826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816960159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -49.392237 kcal Electronic energy + Delta-G solvation = -25224.270943 eV Core-core repulsion = 21456.687799 eV Total energy + Delta-G solvation = -3767.583144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06078 -39.91487 -38.18621 -36.93749 -36.60440 -33.84469 -33.28462 -30.40514 -29.47422 -28.62882 -28.43349 -26.47844 -25.28876 -23.67937 -21.75993 -21.05685 -20.62960 -20.18268 -19.06130 -18.11170 -17.58806 -17.12102 -16.63770 -15.91461 -15.60708 -15.23817 -14.83496 -14.79104 -14.43310 -13.85350 -13.51973 -13.43911 -13.25866 -12.85384 -12.76434 -12.63617 -12.38967 -12.34305 -12.09354 -11.70259 -11.66833 -11.16072 -11.14142 -11.03019 -10.80547 -10.71092 -10.54674 -10.46452 -10.23665 -10.01164 -9.71954 -9.28230 -9.04426 -8.50599 -7.66320 -7.40352 -6.64055 -4.46139 1.70370 2.17054 2.27120 2.80393 3.09110 3.11901 3.15338 3.19007 3.27717 3.70023 3.96222 4.20505 4.33677 4.37129 4.66847 4.72515 4.76525 4.84102 4.85504 4.97084 5.17625 5.31230 5.43135 5.49133 5.58329 5.74215 5.79105 5.87635 5.94822 6.04661 6.05460 6.24561 6.41436 6.69399 6.98586 6.99720 7.25483 7.37354 7.44095 7.63672 7.75677 7.87119 8.02408 8.18125 8.51391 8.78672 8.83433 8.86758 10.26521 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.028565 B = 0.002664 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.985945 B =10508.449113 C =10941.473321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.495 3.505 4 O -0.503 6.503 5 C -0.137 4.137 6 H 0.139 0.861 7 C -0.134 4.134 8 H 0.134 0.866 9 C 0.125 3.875 10 N -0.626 5.626 11 C 0.588 3.412 12 O -0.535 6.535 13 C -0.130 4.130 14 C -0.212 4.212 15 C -0.108 4.108 16 C -0.196 4.196 17 C 0.094 3.906 18 C -0.465 4.465 19 H 0.079 0.921 20 C 0.068 3.932 21 N -0.801 5.801 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.083 4.083 27 C 0.132 3.868 28 C -0.140 4.140 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.281 0.719 39 H 0.142 0.858 40 H 0.075 0.925 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 -10.566 -4.152 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.338 3.662 4 O -0.391 6.391 5 C -0.156 4.156 6 H 0.157 0.843 7 C -0.153 4.153 8 H 0.152 0.848 9 C 0.002 3.998 10 N -0.362 5.362 11 C 0.382 3.618 12 O -0.412 6.412 13 C -0.133 4.133 14 C -0.231 4.231 15 C -0.126 4.126 16 C -0.216 4.216 17 C 0.091 3.909 18 C -0.495 4.495 19 H 0.097 0.903 20 C -0.149 4.149 21 N -0.427 5.427 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.103 4.103 27 C 0.009 3.991 28 C -0.159 4.159 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.159 0.841 40 H 0.093 0.907 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.053 -10.404 -3.277 18.590 hybrid contribution 0.183 0.406 0.154 0.471 sum -14.870 -9.998 -3.124 18.189 Atomic orbital electron populations 1.23296 0.76053 1.03808 1.02677 1.86489 1.23514 1.33079 1.84013 1.22505 0.90245 0.81299 0.72158 1.90688 1.66847 1.36432 1.45095 1.22458 0.87884 1.00855 1.04430 0.84299 1.23963 0.97717 0.93507 1.00145 0.84803 1.22183 0.85958 1.04273 0.87416 1.49149 1.27514 1.38241 1.21306 1.18627 0.77604 0.79107 0.86495 1.90740 1.63318 1.65303 1.21818 1.19444 1.02980 0.98296 0.92603 1.20773 1.07684 1.02501 0.92174 1.20485 0.98746 0.96154 0.97223 1.21283 1.04626 1.00309 0.95395 1.17654 0.90004 0.92749 0.90461 1.19549 1.22028 0.98905 1.09013 0.90277 1.25935 0.97453 0.96253 0.95235 1.69737 1.34437 1.23449 1.15109 0.86125 0.79725 0.80973 0.79054 1.18568 1.19906 1.19912 1.21894 0.93058 0.93781 1.01615 1.21675 0.86980 0.90887 0.99565 1.24475 0.96911 1.03269 0.91279 0.85189 0.91817 0.91775 0.87939 0.87247 0.90619 0.88002 0.88727 0.88459 0.90749 0.84065 0.90690 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.39 10.56 -39.26 -0.41 -3.80 16 3 C 0.49 5.42 7.74 36.00 0.28 5.70 16 4 O -0.50 -6.83 16.09 -18.76 -0.30 -7.14 16 5 C -0.14 -1.32 6.05 -89.45 -0.54 -1.87 16 6 H 0.14 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.13 -1.52 6.43 -89.06 -0.57 -2.09 16 8 H 0.13 1.60 7.80 -51.93 -0.41 1.19 16 9 C 0.12 1.61 4.86 -2.41 -0.01 1.59 16 10 N -0.63 -10.27 3.31 -170.40 -0.56 -10.84 16 11 C 0.59 12.79 7.69 -12.31 -0.09 12.69 16 12 O -0.54 -13.46 16.84 5.32 0.09 -13.37 16 13 C -0.13 -3.01 5.69 -105.04 -0.60 -3.61 16 14 C -0.21 -4.28 7.94 -38.92 -0.31 -4.59 16 15 C -0.11 -2.21 10.01 -39.73 -0.40 -2.61 16 16 C -0.20 -4.55 9.78 -38.81 -0.38 -4.93 16 17 C 0.09 2.44 5.55 -106.87 -0.59 1.85 16 18 C -0.46 -12.17 9.04 -37.73 -0.34 -12.51 16 19 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 20 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 21 N -0.80 -21.48 10.60 55.55 0.59 -20.89 16 22 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 26 C -0.08 -2.19 8.21 -38.45 -0.32 -2.51 16 27 C 0.13 1.69 6.89 -2.41 -0.02 1.68 16 28 C -0.14 -1.52 7.04 -86.74 -0.61 -2.14 16 29 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 1.53 5.90 -51.93 -0.31 1.23 16 34 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 35 H 0.10 1.71 5.12 -52.49 -0.27 1.44 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 39 H 0.14 4.07 5.92 -52.48 -0.31 3.76 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.30 7.84 -51.93 -0.41 0.89 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.65 348.69 -8.94 -40.59 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.03 Total: 6.59 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.53 Total: -10.41 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.02 Total: -31.72 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.63 Total: -24.31 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.65 -8.94 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816960159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.804 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds