Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47275 * 311.43440 * 3 2 1 5 5 C 1.36942 * 120.00091 * 273.56596 * 4 3 2 6 6 H 1.08001 * 120.00219 * 190.21165 * 5 4 3 7 7 C 1.38813 * 119.99631 * 10.21274 * 5 4 3 8 8 N 1.31613 * 120.00310 * 9.38007 * 7 5 4 9 9 Si 1.86805 * 119.99781 * 189.37831 * 7 5 4 10 10 H 1.48498 * 109.47049 * 89.99897 * 9 7 5 11 11 H 1.48495 * 109.47142 * 210.00345 * 9 7 5 12 12 H 1.48504 * 109.47193 * 329.99828 * 9 7 5 13 13 S 1.65599 * 119.99989 * 93.56648 * 4 3 2 14 14 O 1.42106 * 104.27463 * 153.93233 * 13 4 3 15 15 O 1.42100 * 104.27614 * 26.07369 * 13 4 3 16 16 C 1.81405 * 104.44848 * 269.99884 * 13 4 3 17 17 C 1.52993 * 109.46788 * 177.01642 * 16 13 4 18 18 H 1.09003 * 109.47770 * 307.23841 * 17 16 13 19 19 O 1.42896 * 109.47545 * 67.24051 * 17 16 13 20 20 C 1.42910 * 113.99984 * 253.35035 * 19 17 16 21 21 C 1.53003 * 109.47214 * 187.23762 * 17 16 13 22 22 C 1.54262 * 110.03108 * 297.17025 * 21 17 16 23 23 C 1.54889 * 104.19406 * 217.10357 * 22 21 17 24 24 C 1.54889 * 102.75003 * 37.94038 * 23 22 21 25 25 C 1.53869 * 110.03545 * 179.97438 * 21 17 16 26 26 H 4.40638 * 5.51439 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.46726 * 191.43418 * 3 2 1 28 28 H 1.08996 * 109.47343 * 71.43506 * 3 2 1 29 29 H 0.97004 * 119.99933 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46991 * 57.01928 * 16 13 4 31 31 H 1.09003 * 109.46767 * 297.01521 * 16 13 4 32 32 H 1.09001 * 109.47064 * 176.86055 * 20 19 17 33 33 H 1.08994 * 109.47316 * 56.86201 * 20 19 17 34 34 H 1.08997 * 109.46558 * 296.85783 * 20 19 17 35 35 H 1.08998 * 110.01476 * 58.60946 * 21 17 16 36 36 H 1.09006 * 110.48547 * 335.77605 * 22 21 17 37 37 H 1.09001 * 110.49236 * 98.42633 * 22 21 17 38 38 H 1.09004 * 110.75462 * 279.62178 * 23 22 21 39 39 H 1.09000 * 110.91580 * 156.33115 * 23 22 21 40 40 H 1.08999 * 110.48245 * 203.38295 * 24 23 22 41 41 H 1.08994 * 110.59839 * 80.79601 * 24 23 22 42 42 H 1.09000 * 110.03408 * 238.56807 * 25 21 17 43 43 H 1.09007 * 110.03253 * 359.97438 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9131 1.0355 5 6 3.2933 -0.4692 2.3212 6 1 3.8049 -1.0850 3.0460 7 6 2.7963 0.7725 2.6929 8 7 2.0165 1.4422 1.8709 9 14 3.2344 1.4931 4.3598 10 1 4.4739 2.3019 4.2391 11 1 2.1234 2.3573 4.8329 12 1 3.4541 0.3926 5.3324 13 16 3.4956 -2.4830 0.6512 14 8 4.4623 -2.8674 1.6193 15 8 3.8205 -2.4395 -0.7314 16 6 1.9414 -3.3815 0.9121 17 6 2.1272 -4.8474 0.5155 18 1 2.5321 -4.9021 -0.4950 19 8 3.0317 -5.4762 1.4257 20 6 4.3251 -5.7337 0.8750 21 6 0.7761 -5.5638 0.5629 22 6 0.2241 -5.5561 2.0034 23 6 -0.4595 -6.9376 2.1556 24 6 0.4947 -7.8786 1.3791 25 6 0.9480 -7.0403 0.1654 26 1 -1.0499 -0.0001 0.0003 27 1 3.0088 1.0081 0.2037 28 1 3.0095 -0.3263 -0.9741 29 1 1.6695 2.3101 2.1305 30 1 1.1572 -2.9362 0.3001 31 1 1.6597 -3.3224 1.9634 32 1 4.9690 -6.1605 1.6440 33 1 4.7588 -4.8009 0.5147 34 1 4.2339 -6.4360 0.0465 35 1 0.0713 -5.0759 -0.1104 36 1 1.0365 -5.4512 2.7226 37 1 -0.5037 -4.7544 2.1288 38 1 -1.4500 -6.9306 1.7005 39 1 -0.5200 -7.2284 3.2043 40 1 -0.0357 -8.7717 1.0489 41 1 1.3509 -8.1507 1.9962 42 1 0.3259 -7.2689 -0.7000 43 1 1.9940 -7.2465 -0.0618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849336392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -54.800900 kcal Electronic energy + Delta-G solvation = -26081.866055 eV Core-core repulsion = 22449.492325 eV Total energy + Delta-G solvation = -3632.373730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.14791 -36.59760 -36.32613 -35.81056 -34.62112 -32.00213 -31.77190 -31.14681 -28.66384 -27.48726 -26.61553 -26.30278 -23.86047 -22.43293 -20.52575 -19.48776 -18.54390 -17.89549 -17.01759 -16.52968 -16.36953 -15.85338 -15.67834 -14.87148 -14.66612 -14.54899 -14.26304 -13.91361 -13.49530 -13.28545 -13.14153 -12.88113 -12.52729 -12.35021 -11.88847 -11.60992 -11.27878 -11.21770 -11.12837 -11.09309 -10.97146 -10.90507 -10.82046 -10.79513 -10.50248 -10.45084 -10.44332 -10.31607 -10.23493 -9.85461 -9.66071 -9.28948 -9.15569 -8.80804 -8.25008 -6.49458 -3.99952 1.48235 3.11210 3.15708 3.19520 3.62413 3.97585 4.00496 4.12161 4.38258 4.64152 4.75073 4.78338 4.84392 5.03593 5.21892 5.33626 5.35114 5.43761 5.53023 5.56962 5.57880 5.69889 5.77567 5.77791 5.82834 5.88063 6.01436 6.02924 6.05652 6.12198 6.19020 6.32955 6.37980 6.42450 6.59234 6.62204 6.81237 7.00982 7.19087 7.36078 7.44490 8.22018 8.59140 8.84729 9.02319 10.38770 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.004848 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.536309 B = 5774.294502 C = 5920.628504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.102 4.102 3 C 0.233 3.767 4 N -0.806 5.806 5 C -0.245 4.245 6 H 0.122 0.878 7 C 0.024 3.976 8 N -0.837 5.837 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.265 1.265 13 S 2.486 3.514 14 O -0.970 6.970 15 O -1.000 7.000 16 C -0.678 4.678 17 C 0.113 3.887 18 H 0.063 0.937 19 O -0.371 6.371 20 C 0.023 3.977 21 C -0.088 4.088 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.197 0.803 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 -9.377 -1.653 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.105 4.105 3 C 0.108 3.892 4 N -0.629 5.629 5 C -0.390 4.390 6 H 0.139 0.861 7 C -0.185 4.185 8 N -0.478 5.478 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.189 1.189 13 S 2.584 3.416 14 O -0.960 6.960 15 O -0.990 6.990 16 C -0.797 4.797 17 C 0.053 3.947 18 H 0.081 0.919 19 O -0.290 6.290 20 C -0.074 4.074 21 C -0.108 4.108 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.156 4.156 26 H 0.214 0.786 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.999 -9.829 -1.893 10.449 hybrid contribution -1.047 0.509 0.738 1.378 sum -4.046 -9.320 -1.155 10.226 Atomic orbital electron populations 1.24238 0.95342 1.04673 1.05813 1.23578 0.94668 0.96658 0.95612 1.18608 0.83613 0.97649 0.89352 1.54500 1.73031 1.20289 1.15063 1.20078 1.28999 1.01542 0.88375 0.86094 1.25579 0.95364 0.97790 0.99754 1.70088 1.28534 1.14161 1.35030 0.85806 0.78284 0.79265 0.80845 1.19838 1.20671 1.18925 1.12954 0.80471 0.74300 0.73844 1.93394 1.58840 1.82472 1.61268 1.93364 1.84829 1.86083 1.34705 1.31549 1.30360 1.07246 1.10578 1.21682 0.90971 0.89900 0.92100 0.91878 1.87949 1.22139 1.80048 1.38851 1.22981 0.85140 0.99923 0.99316 1.21980 0.95363 0.95316 0.98091 1.22329 0.99930 0.96410 0.96495 1.22482 0.98217 0.95676 0.99804 1.22299 0.99075 0.97408 0.96883 1.22164 1.01236 0.94421 0.97786 0.78613 0.85146 0.90651 0.91425 0.86496 0.85839 0.89067 0.93903 0.94365 0.90246 0.90183 0.91959 0.92060 0.91904 0.92409 0.91468 0.92242 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.73 19.25 29.55 0.57 -5.16 16 2 C -0.10 -2.28 11.32 -37.12 -0.42 -2.70 16 3 C 0.23 5.31 5.43 -6.83 -0.04 5.28 16 4 N -0.81 -19.28 2.81 -62.77 -0.18 -19.46 16 5 C -0.25 -6.05 9.51 -15.06 -0.14 -6.19 16 6 H 0.12 2.99 7.05 -52.49 -0.37 2.62 16 7 C 0.02 0.57 5.26 -17.43 -0.09 0.48 16 8 N -0.84 -19.93 8.29 55.49 0.46 -19.47 16 9 Si 0.93 18.75 29.56 -169.99 -5.03 13.72 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 12 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 13 S 2.49 56.89 4.26 -107.50 -0.46 56.44 16 14 O -0.97 -24.08 14.71 -57.85 -0.85 -24.93 16 15 O -1.00 -24.18 16.54 -57.54 -0.95 -25.13 16 16 C -0.68 -13.28 5.53 37.15 0.21 -13.07 16 17 C 0.11 1.96 1.75 -26.73 -0.05 1.92 16 18 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 19 O -0.37 -6.68 8.48 -35.23 -0.30 -6.98 16 20 C 0.02 0.38 10.13 101.05 1.02 1.40 16 21 C -0.09 -1.30 2.82 -89.51 -0.25 -1.55 16 22 C -0.11 -1.65 5.35 -25.07 -0.13 -1.78 16 23 C -0.12 -1.48 6.91 -24.74 -0.17 -1.65 16 24 C -0.12 -1.38 6.83 -25.05 -0.17 -1.55 16 25 C -0.12 -1.50 6.23 -25.59 -0.16 -1.66 16 26 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 27 H 0.13 3.05 6.14 -51.93 -0.32 2.73 16 28 H 0.08 1.63 6.84 -51.93 -0.36 1.27 16 29 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.12 2.21 8.14 -51.93 -0.42 1.79 16 31 H 0.12 2.46 7.52 -51.92 -0.39 2.07 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.04 0.80 5.67 -51.93 -0.29 0.50 16 34 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.29 7.03 -51.93 -0.37 0.93 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.82 7.36 -51.93 -0.38 0.44 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -28.28 355.03 -8.44 -36.71 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.65 Total: 9.98 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 0.17 Total: -26.24 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.28 Total: -38.93 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.10 Total: -57.04 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: 56.89 SS G_CDS: -0.46 Total: 56.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.28 -8.44 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849336392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.089 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds