Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47275 * 311.43440 * 3 2 1 5 5 C 1.36942 * 120.00091 * 273.56596 * 4 3 2 6 6 H 1.08001 * 120.00219 * 190.21165 * 5 4 3 7 7 C 1.38813 * 119.99631 * 10.21274 * 5 4 3 8 8 N 1.31613 * 120.00310 * 9.38007 * 7 5 4 9 9 Si 1.86805 * 119.99781 * 189.37831 * 7 5 4 10 10 H 1.48498 * 109.47049 * 89.99897 * 9 7 5 11 11 H 1.48495 * 109.47142 * 210.00345 * 9 7 5 12 12 H 1.48504 * 109.47193 * 329.99828 * 9 7 5 13 13 S 1.65599 * 119.99989 * 93.56648 * 4 3 2 14 14 O 1.42106 * 104.27463 * 153.93233 * 13 4 3 15 15 O 1.42100 * 104.27614 * 26.07369 * 13 4 3 16 16 C 1.81405 * 104.44848 * 269.99884 * 13 4 3 17 17 C 1.52993 * 109.46788 * 177.01642 * 16 13 4 18 18 H 1.09003 * 109.47770 * 307.23841 * 17 16 13 19 19 O 1.42896 * 109.47545 * 67.24051 * 17 16 13 20 20 C 1.42910 * 113.99984 * 253.35035 * 19 17 16 21 21 C 1.53003 * 109.47214 * 187.23762 * 17 16 13 22 22 C 1.54262 * 110.03108 * 297.17025 * 21 17 16 23 23 C 1.54889 * 104.19406 * 217.10357 * 22 21 17 24 24 C 1.54889 * 102.75003 * 37.94038 * 23 22 21 25 25 C 1.53869 * 110.03545 * 179.97438 * 21 17 16 26 26 H 4.40638 * 5.51439 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.46726 * 191.43418 * 3 2 1 28 28 H 1.08996 * 109.47343 * 71.43506 * 3 2 1 29 29 H 0.97004 * 119.99933 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46991 * 57.01928 * 16 13 4 31 31 H 1.09003 * 109.46767 * 297.01521 * 16 13 4 32 32 H 1.09001 * 109.47064 * 176.86055 * 20 19 17 33 33 H 1.08994 * 109.47316 * 56.86201 * 20 19 17 34 34 H 1.08997 * 109.46558 * 296.85783 * 20 19 17 35 35 H 1.08998 * 110.01476 * 58.60946 * 21 17 16 36 36 H 1.09006 * 110.48547 * 335.77605 * 22 21 17 37 37 H 1.09001 * 110.49236 * 98.42633 * 22 21 17 38 38 H 1.09004 * 110.75462 * 279.62178 * 23 22 21 39 39 H 1.09000 * 110.91580 * 156.33115 * 23 22 21 40 40 H 1.08999 * 110.48245 * 203.38295 * 24 23 22 41 41 H 1.08994 * 110.59839 * 80.79601 * 24 23 22 42 42 H 1.09000 * 110.03408 * 238.56807 * 25 21 17 43 43 H 1.09007 * 110.03253 * 359.97438 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9131 1.0355 5 6 3.2933 -0.4692 2.3212 6 1 3.8049 -1.0850 3.0460 7 6 2.7963 0.7725 2.6929 8 7 2.0165 1.4422 1.8709 9 14 3.2344 1.4931 4.3598 10 1 4.4739 2.3019 4.2391 11 1 2.1234 2.3573 4.8329 12 1 3.4541 0.3926 5.3324 13 16 3.4956 -2.4830 0.6512 14 8 4.4623 -2.8674 1.6193 15 8 3.8205 -2.4395 -0.7314 16 6 1.9414 -3.3815 0.9121 17 6 2.1272 -4.8474 0.5155 18 1 2.5321 -4.9021 -0.4950 19 8 3.0317 -5.4762 1.4257 20 6 4.3251 -5.7337 0.8750 21 6 0.7761 -5.5638 0.5629 22 6 0.2241 -5.5561 2.0034 23 6 -0.4595 -6.9376 2.1556 24 6 0.4947 -7.8786 1.3791 25 6 0.9480 -7.0403 0.1654 26 1 -1.0499 -0.0001 0.0003 27 1 3.0088 1.0081 0.2037 28 1 3.0095 -0.3263 -0.9741 29 1 1.6695 2.3101 2.1305 30 1 1.1572 -2.9362 0.3001 31 1 1.6597 -3.3224 1.9634 32 1 4.9690 -6.1605 1.6440 33 1 4.7588 -4.8009 0.5147 34 1 4.2339 -6.4360 0.0465 35 1 0.0713 -5.0759 -0.1104 36 1 1.0365 -5.4512 2.7226 37 1 -0.5037 -4.7544 2.1288 38 1 -1.4500 -6.9306 1.7005 39 1 -0.5200 -7.2284 3.2043 40 1 -0.0357 -8.7717 1.0489 41 1 1.3509 -8.1507 1.9962 42 1 0.3259 -7.2689 -0.7000 43 1 1.9940 -7.2465 -0.0618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849336392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -71.228301 kcal Electronic energy + Delta-G solvation = -26082.578401 eV Core-core repulsion = 22449.492325 eV Total energy + Delta-G solvation = -3633.086076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.39344 -38.14660 -37.82226 -37.69527 -36.60241 -33.70189 -33.16362 -32.88091 -29.68390 -28.76428 -28.36227 -27.62028 -25.65370 -23.80392 -21.49981 -20.67190 -20.34325 -19.63506 -18.81193 -18.25138 -17.74488 -17.29044 -17.09283 -16.57332 -16.21711 -15.95767 -15.74597 -15.30343 -15.10566 -14.97367 -14.28527 -14.13223 -14.11761 -13.84169 -13.36390 -13.30377 -13.08365 -12.84838 -12.80319 -12.68599 -12.47244 -12.27309 -12.26030 -12.01866 -11.94374 -11.86778 -11.69675 -11.56395 -11.47772 -11.38364 -11.26183 -10.95545 -10.71803 -10.44211 -10.00391 -8.22105 -5.85869 -0.35479 1.48612 1.50970 1.59208 1.87450 2.34149 2.43952 2.63135 2.64936 2.95780 3.18339 3.52369 3.54714 3.68308 3.80594 3.90801 3.94831 3.97719 4.28640 4.34070 4.35612 4.44916 4.55318 4.60102 4.68412 4.71207 4.74113 4.84955 4.88667 4.96776 5.02983 5.03530 5.11311 5.25670 5.30816 5.36466 5.45627 5.46562 5.54972 5.62317 6.07991 6.41359 6.81920 7.19083 7.23937 8.66252 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.004848 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.536309 B = 5774.294502 C = 5920.628504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.144 4.144 3 C 0.236 3.764 4 N -0.830 5.830 5 C -0.291 4.291 6 H 0.108 0.892 7 C -0.004 4.004 8 N -0.859 5.859 9 Si 0.986 3.014 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.267 1.267 13 S 2.516 3.484 14 O -0.991 6.991 15 O -1.013 7.013 16 C -0.657 4.657 17 C 0.106 3.894 18 H 0.069 0.931 19 O -0.382 6.382 20 C 0.013 3.987 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.118 4.118 26 H 0.233 0.767 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.274 0.726 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -11.326 -2.001 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.147 4.147 3 C 0.111 3.889 4 N -0.654 5.654 5 C -0.431 4.431 6 H 0.125 0.875 7 C -0.210 4.210 8 N -0.500 5.500 9 Si 0.809 3.191 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.192 1.192 13 S 2.616 3.384 14 O -0.981 6.981 15 O -1.003 7.003 16 C -0.782 4.782 17 C 0.047 3.953 18 H 0.087 0.913 19 O -0.301 6.301 20 C -0.083 4.083 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.155 4.155 26 H 0.250 0.750 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.743 -11.684 -2.214 12.803 hybrid contribution -0.494 0.894 0.717 1.248 sum -5.237 -10.791 -1.497 12.087 Atomic orbital electron populations 1.25077 0.96189 1.02617 1.03812 1.23668 0.95058 0.98557 0.97426 1.18430 0.84614 0.96964 0.88941 1.54037 1.75176 1.21026 1.15137 1.19947 1.32003 1.02896 0.88254 0.87482 1.26120 0.95100 0.97483 1.02318 1.70176 1.29454 1.14302 1.36045 0.85023 0.78051 0.78379 0.77601 1.19656 1.20134 1.19183 1.10631 0.80490 0.74218 0.73033 1.93387 1.59965 1.82905 1.61885 1.93362 1.85327 1.86534 1.35085 1.31269 1.27087 1.08883 1.10995 1.21871 0.92885 0.88445 0.92120 0.91315 1.87950 1.22701 1.79919 1.39510 1.23184 0.84633 0.99400 1.01092 1.22029 0.93446 0.96700 0.98586 1.22337 0.99394 0.98198 0.95788 1.22473 0.98731 0.93891 1.00555 1.22302 0.98924 0.97987 0.96243 1.22188 1.01611 0.92769 0.98975 0.75017 0.86491 0.90470 0.91539 0.85197 0.85940 0.87456 0.96652 0.91138 0.89207 0.92491 0.92153 0.90543 0.91307 0.90192 0.92282 0.90228 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.08 19.25 74.32 1.43 -8.65 16 2 C -0.14 -6.42 11.32 31.13 0.35 -6.07 16 3 C 0.24 11.05 5.43 84.57 0.46 11.51 16 4 N -0.83 -40.80 2.81 -352.52 -0.99 -41.80 16 5 C -0.29 -14.87 9.51 84.03 0.80 -14.07 16 6 H 0.11 5.57 7.05 -2.91 -0.02 5.55 16 7 C 0.00 -0.20 5.26 84.86 0.45 0.25 16 8 N -0.86 -41.84 8.29 21.65 0.18 -41.67 16 9 Si 0.99 39.27 29.56 68.60 2.03 41.30 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 12 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 13 S 2.52 116.34 4.26 -56.49 -0.24 116.10 16 14 O -0.99 -50.25 14.71 -127.36 -1.87 -52.12 16 15 O -1.01 -49.13 16.54 -127.65 -2.11 -51.24 16 16 C -0.66 -25.20 5.53 71.98 0.40 -24.80 16 17 C 0.11 3.53 1.75 30.59 0.05 3.58 16 18 H 0.07 2.21 7.65 -2.39 -0.02 2.20 16 19 O -0.38 -13.28 8.48 -148.98 -1.26 -14.54 16 20 C 0.01 0.41 10.13 113.37 1.15 1.56 16 21 C -0.09 -2.36 2.82 -10.07 -0.03 -2.39 16 22 C -0.12 -3.21 5.35 31.67 0.17 -3.04 16 23 C -0.12 -2.47 6.91 31.89 0.22 -2.25 16 24 C -0.12 -2.32 6.83 31.69 0.22 -2.10 16 25 C -0.12 -2.58 6.23 31.33 0.20 -2.38 16 26 H 0.23 6.92 7.80 -4.42 -0.03 6.89 16 27 H 0.12 5.73 6.14 -2.39 -0.01 5.71 16 28 H 0.08 3.44 6.84 -2.39 -0.02 3.42 16 29 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 30 H 0.13 4.71 8.14 -2.39 -0.02 4.69 16 31 H 0.12 4.84 7.52 -2.39 -0.02 4.83 16 32 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.01 0.55 5.67 -2.39 -0.01 0.54 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.79 7.03 -2.38 -0.02 1.77 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.36 7.36 -2.38 -0.02 1.35 16 Total: -1.00 -61.29 355.03 2.57 -58.72 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.99 Total: 34.11 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 5.86 Total: -48.86 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -0.81 Total: -83.46 kcal Atomic # 8 Polarization: -112.66 SS G_CDS: -5.25 Total: -117.90 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 116.34 SS G_CDS: -0.24 Total: 116.10 kcal Total: -61.29 2.57 -58.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849336392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.509 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds