Wall clock time and date at job start Tue Mar 31 2020 10:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35591 * 117.00206 * 2 1 4 4 C 1.39999 * 118.80613 * 180.02562 * 3 2 1 5 5 C 1.38797 * 119.43417 * 180.02562 * 4 3 2 6 6 C 1.47821 * 121.36395 * 179.97438 * 5 4 3 7 7 O 1.21455 * 120.00520 * 174.34772 * 6 5 4 8 8 O 1.34723 * 119.99803 * 354.35415 * 6 5 4 9 9 C 1.45195 * 116.99750 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47034 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46870 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00329 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00031 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47296 * 59.99648 * 16 14 12 18 18 H 1.48495 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47388 * 299.99657 * 16 14 12 20 20 C 1.46341 * 117.27708 * 359.97438 * 5 4 3 21 21 C 1.39918 * 121.54393 * 180.02562 * 20 5 4 22 22 C 1.36339 * 119.58877 * 179.97438 * 21 20 5 23 23 C 1.39295 * 120.79642 * 0.02562 * 22 21 20 24 24 C 1.36127 * 121.08049 * 359.97221 * 23 22 21 25 25 C 1.40634 * 119.72558 * 0.02641 * 24 23 22 26 26 N 1.31219 * 118.80270 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47012 * 59.99703 * 1 2 3 28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46869 * 299.99758 * 1 2 3 30 30 H 1.08003 * 120.28177 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47315 * 299.99530 * 9 8 6 32 32 H 1.08999 * 109.47697 * 59.99477 * 9 8 6 33 33 H 1.09002 * 109.46947 * 300.00092 * 10 9 8 34 34 H 1.09006 * 109.46832 * 59.99687 * 10 9 8 35 35 H 1.08999 * 109.47267 * 300.00136 * 11 10 9 36 36 H 1.09003 * 109.46634 * 60.00394 * 11 10 9 37 37 H 0.97003 * 119.99946 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.20604 * 0.02562 * 21 20 5 39 39 H 1.07990 * 119.60414 * 180.27335 * 22 21 20 40 40 H 1.07997 * 119.46237 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.13844 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0876 2.4819 0.0000 6 6 5.5627 2.5781 0.0000 7 8 6.1006 3.6622 -0.1031 8 8 6.3104 1.4633 0.1143 9 6 7.7524 1.6333 0.1074 10 6 8.4276 0.2673 0.2465 11 6 9.9470 0.4463 0.2386 12 6 10.6120 -0.8992 0.3749 13 1 10.0111 -1.7926 0.4592 14 6 11.9878 -0.9895 0.3931 15 7 12.7196 0.0983 0.2910 16 14 12.8120 -2.6572 0.5628 17 1 12.4103 -3.5258 -0.5728 18 1 14.2867 -2.4836 0.5551 19 1 12.3942 -3.2882 1.8405 20 6 3.2463 3.6793 0.0005 21 6 3.8012 4.9637 0.0006 22 6 2.9797 6.0519 0.0005 23 6 1.5951 5.9002 0.0010 24 6 1.0235 4.6648 0.0010 25 6 1.8390 3.5191 0.0010 26 7 1.3072 2.2935 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0176 0.3371 -0.0005 31 1 8.0592 2.0968 -0.8302 32 1 8.0472 2.2704 0.9412 33 1 8.1208 -0.1959 1.1843 34 1 8.1328 -0.3702 -0.5872 35 1 10.2535 0.9093 -0.6994 36 1 10.2420 1.0839 1.0720 37 1 13.6875 0.0347 0.3035 38 1 4.8735 5.0924 -0.0002 39 1 3.4077 7.0434 -0.0039 40 1 0.9647 6.7771 0.0006 41 1 -0.0519 4.5648 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850308451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:23 Heat of formation + Delta-G solvation = -72.609710 kcal Electronic energy + Delta-G solvation = -24647.436444 eV Core-core repulsion = 20878.846515 eV Total energy + Delta-G solvation = -3768.589929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39995 -40.15022 -39.14088 -36.67087 -36.48099 -34.09427 -33.65771 -31.75000 -30.72041 -30.20955 -27.93428 -27.18083 -25.17180 -23.84047 -23.41240 -22.70410 -21.09081 -20.37179 -19.06079 -18.39458 -17.55723 -17.26141 -16.57072 -16.44389 -16.27442 -15.84843 -15.39875 -15.32296 -14.55307 -14.49447 -14.40367 -14.08303 -13.93581 -13.49274 -13.21722 -12.35656 -12.32465 -12.28624 -12.22988 -12.03586 -11.92206 -11.72416 -10.99302 -10.98969 -10.84820 -10.77374 -10.70341 -10.62421 -10.49443 -9.88890 -9.78254 -9.53514 -9.20896 -8.90200 -8.43050 -8.40723 -6.05709 -4.08946 -0.28640 0.52686 1.34150 2.36954 2.41682 2.71253 2.76308 3.31383 3.35830 3.38304 3.77664 3.81269 4.21002 4.37684 4.39611 4.48940 4.66384 4.82612 4.94419 4.97777 5.00756 5.15075 5.24526 5.30038 5.30323 5.34399 5.49311 5.51158 5.57993 5.78155 5.91182 5.97005 6.07026 6.20344 6.34690 6.47919 6.52947 6.73903 6.83818 6.92613 7.44126 7.56504 7.65909 7.67212 7.92139 8.32806 8.96980 9.55510 11.05687 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.002495 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.584546 B =11219.392382 C =12724.706655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.347 3.653 4 C -0.106 4.106 5 C -0.033 4.033 6 C 0.511 3.489 7 O -0.492 6.492 8 O -0.347 6.347 9 C 0.068 3.932 10 C -0.110 4.110 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.094 4.094 21 C -0.088 4.088 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.107 4.107 25 C 0.162 3.838 26 N -0.524 5.524 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.166 0.834 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.163 0.837 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.760 8.229 -0.754 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.153 3.847 4 C -0.126 4.126 5 C -0.041 4.041 6 C 0.355 3.645 7 O -0.381 6.381 8 O -0.263 6.263 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.096 4.096 21 C -0.106 4.106 22 C -0.145 4.145 23 C -0.110 4.110 24 C -0.126 4.126 25 C 0.043 3.957 26 N -0.252 5.252 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.154 8.321 -0.789 28.412 hybrid contribution 1.212 -0.656 0.074 1.380 sum -25.942 7.666 -0.715 27.060 Atomic orbital electron populations 1.22917 0.76734 1.03228 1.02659 1.86270 1.23335 1.24120 1.87046 1.19739 0.88768 0.84943 0.91271 1.21664 0.92060 0.99439 0.99463 1.20384 0.90246 0.92831 1.00676 1.20642 0.87197 0.83013 0.73688 1.90701 1.73688 1.28575 1.45140 1.86562 1.23031 1.34452 1.82215 1.23654 0.72484 1.01710 1.02562 1.21800 0.98492 0.92367 1.02073 1.19047 0.86681 0.97776 0.97734 1.21126 0.91395 0.92921 1.50670 0.92444 1.25026 0.97534 0.96705 0.95162 1.69951 1.05566 1.27658 1.50181 0.86599 0.78211 0.84114 0.78750 1.20159 1.21257 1.20157 1.19434 0.92737 0.93160 1.04270 1.21770 1.02973 0.90340 0.95496 1.21053 0.93347 0.99362 1.00711 1.20977 0.95270 0.97256 0.97478 1.20678 0.99837 0.90108 1.01970 1.18254 0.89451 0.90262 0.97708 1.67115 1.40096 0.98164 1.19795 0.92061 0.88310 0.92060 0.81605 0.91050 0.91062 0.91968 0.91965 0.96180 0.96186 0.92800 0.82016 0.85207 0.85174 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.35 101.05 1.05 1.34 16 2 O -0.30 -3.20 10.45 -18.47 -0.19 -3.40 16 3 C 0.35 4.11 7.49 -17.15 -0.13 3.98 16 4 C -0.11 -1.27 9.62 -38.72 -0.37 -1.64 16 5 C -0.03 -0.44 6.08 -102.51 -0.62 -1.06 16 6 C 0.51 7.77 7.90 34.65 0.27 8.05 16 7 O -0.49 -8.17 13.50 -19.23 -0.26 -8.43 16 8 O -0.35 -5.55 9.61 -40.56 -0.39 -5.94 16 9 C 0.07 1.20 5.48 37.16 0.20 1.40 16 10 C -0.11 -2.20 5.53 -26.73 -0.15 -2.34 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.09 -1.20 5.90 -104.71 -0.62 -1.82 16 21 C -0.09 -1.05 9.31 -39.64 -0.37 -1.41 16 22 C -0.13 -1.17 9.97 -39.87 -0.40 -1.57 16 23 C -0.09 -0.73 9.94 -39.95 -0.40 -1.12 16 24 C -0.11 -1.01 9.99 -39.44 -0.39 -1.40 16 25 C 0.16 1.94 6.62 -84.90 -0.56 1.38 16 26 N -0.52 -6.26 9.00 -11.13 -0.10 -6.36 16 27 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 30 H 0.17 1.79 7.72 -52.48 -0.41 1.39 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.16 2.11 5.17 -52.48 -0.27 1.84 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 356.67 15.07 5.38 5.38 Total: -1.00 -31.44 356.67 -8.17 -39.61 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.28 Total: -2.31 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.04 Total: -9.07 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.64 Total: -32.21 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.84 Total: -17.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.44 -8.17 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850308451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.001 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds