Wall clock time and date at job start Tue Mar 31 2020 10:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35591 * 117.00206 * 2 1 4 4 C 1.39999 * 118.80613 * 180.02562 * 3 2 1 5 5 C 1.38797 * 119.43417 * 180.02562 * 4 3 2 6 6 C 1.47821 * 121.36395 * 179.97438 * 5 4 3 7 7 O 1.21455 * 120.00520 * 174.34772 * 6 5 4 8 8 O 1.34723 * 119.99803 * 354.35415 * 6 5 4 9 9 C 1.45195 * 116.99750 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47034 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46870 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00329 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00031 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47296 * 59.99648 * 16 14 12 18 18 H 1.48495 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47388 * 299.99657 * 16 14 12 20 20 C 1.46341 * 117.27708 * 359.97438 * 5 4 3 21 21 C 1.39918 * 121.54393 * 180.02562 * 20 5 4 22 22 C 1.36339 * 119.58877 * 179.97438 * 21 20 5 23 23 C 1.39295 * 120.79642 * 0.02562 * 22 21 20 24 24 C 1.36127 * 121.08049 * 359.97221 * 23 22 21 25 25 C 1.40634 * 119.72558 * 0.02641 * 24 23 22 26 26 N 1.31219 * 118.80270 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47012 * 59.99703 * 1 2 3 28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46869 * 299.99758 * 1 2 3 30 30 H 1.08003 * 120.28177 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47315 * 299.99530 * 9 8 6 32 32 H 1.08999 * 109.47697 * 59.99477 * 9 8 6 33 33 H 1.09002 * 109.46947 * 300.00092 * 10 9 8 34 34 H 1.09006 * 109.46832 * 59.99687 * 10 9 8 35 35 H 1.08999 * 109.47267 * 300.00136 * 11 10 9 36 36 H 1.09003 * 109.46634 * 60.00394 * 11 10 9 37 37 H 0.97003 * 119.99946 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.20604 * 0.02562 * 21 20 5 39 39 H 1.07990 * 119.60414 * 180.27335 * 22 21 20 40 40 H 1.07997 * 119.46237 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.13844 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0876 2.4819 0.0000 6 6 5.5627 2.5781 0.0000 7 8 6.1006 3.6622 -0.1031 8 8 6.3104 1.4633 0.1143 9 6 7.7524 1.6333 0.1074 10 6 8.4276 0.2673 0.2465 11 6 9.9470 0.4463 0.2386 12 6 10.6120 -0.8992 0.3749 13 1 10.0111 -1.7926 0.4592 14 6 11.9878 -0.9895 0.3931 15 7 12.7196 0.0983 0.2910 16 14 12.8120 -2.6572 0.5628 17 1 12.4103 -3.5258 -0.5728 18 1 14.2867 -2.4836 0.5551 19 1 12.3942 -3.2882 1.8405 20 6 3.2463 3.6793 0.0005 21 6 3.8012 4.9637 0.0006 22 6 2.9797 6.0519 0.0005 23 6 1.5951 5.9002 0.0010 24 6 1.0235 4.6648 0.0010 25 6 1.8390 3.5191 0.0010 26 7 1.3072 2.2935 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0176 0.3371 -0.0005 31 1 8.0592 2.0968 -0.8302 32 1 8.0472 2.2704 0.9412 33 1 8.1208 -0.1959 1.1843 34 1 8.1328 -0.3702 -0.5872 35 1 10.2535 0.9093 -0.6994 36 1 10.2420 1.0839 1.0720 37 1 13.6875 0.0347 0.3035 38 1 4.8735 5.0924 -0.0002 39 1 3.4077 7.0434 -0.0039 40 1 0.9647 6.7771 0.0006 41 1 -0.0519 4.5648 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850308451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:22 Heat of formation + Delta-G solvation = -90.747139 kcal Electronic energy + Delta-G solvation = -24648.222942 eV Core-core repulsion = 20878.846515 eV Total energy + Delta-G solvation = -3769.376427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.33681 -41.30327 -39.93569 -37.99219 -37.27942 -35.96124 -34.65170 -33.65336 -31.53264 -31.03989 -29.19018 -28.41587 -26.35601 -25.04787 -24.52117 -23.79641 -22.27726 -22.02554 -19.99559 -19.24478 -18.76301 -18.31915 -18.22096 -17.81955 -17.13469 -17.06751 -16.50033 -16.14003 -16.11633 -15.76840 -15.39611 -15.00265 -14.94753 -14.55818 -14.30244 -14.07321 -13.90732 -13.77681 -13.06786 -12.94001 -12.82054 -12.79008 -12.53060 -12.50176 -12.39870 -12.13428 -11.94085 -11.73180 -11.70239 -11.53822 -11.44367 -11.28250 -10.78123 -10.56382 -9.71710 -9.24205 -8.21636 -6.32923 -1.22320 -0.30843 0.46159 1.23606 1.33718 1.42205 1.44848 1.52888 1.85562 1.89466 2.41467 2.93583 2.99260 3.12452 3.32602 3.36146 3.52860 3.85767 3.98541 3.99319 4.07136 4.22463 4.30157 4.38510 4.42961 4.45470 4.47588 4.53042 4.70093 4.78849 4.79033 4.84631 5.00054 5.06997 5.16148 5.30112 5.35812 5.47518 5.52015 5.64117 5.76143 5.80401 6.05772 6.18954 6.42060 6.56386 6.82805 7.36547 8.90330 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.002495 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.584546 B =11219.392382 C =12724.706655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.337 3.663 4 C -0.099 4.099 5 C -0.052 4.052 6 C 0.513 3.487 7 O -0.510 6.510 8 O -0.345 6.345 9 C 0.078 3.922 10 C -0.095 4.095 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.080 4.080 24 C -0.107 4.107 25 C 0.143 3.857 26 N -0.520 5.520 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.174 0.826 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H -0.002 1.002 36 H -0.002 1.002 37 H 0.265 0.735 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.171 0.829 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.098 8.072 -0.662 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.142 3.858 4 C -0.120 4.120 5 C -0.060 4.060 6 C 0.358 3.642 7 O -0.400 6.400 8 O -0.261 6.261 9 C 0.005 3.995 10 C -0.132 4.132 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.125 4.125 25 C 0.024 3.976 26 N -0.248 5.248 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.188 0.812 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -29.524 8.157 -0.697 30.638 hybrid contribution 1.806 -0.494 0.040 1.873 sum -27.718 7.662 -0.657 28.765 Atomic orbital electron populations 1.23173 0.75024 1.05073 1.02726 1.86263 1.25043 1.23415 1.86903 1.19793 0.88762 0.85440 0.91781 1.21757 0.92551 0.99221 0.98441 1.20278 0.88865 0.93948 1.02942 1.20986 0.87944 0.82367 0.72912 1.90700 1.74190 1.29040 1.46049 1.86530 1.21946 1.35043 1.82579 1.23301 0.73616 1.00086 1.02497 1.21485 0.95239 0.93840 1.02677 1.18925 0.90171 0.96372 0.95601 1.21601 0.92105 0.94100 1.50372 0.91670 1.25991 0.98373 1.00798 0.94687 1.70087 1.05901 1.30120 1.51232 0.85465 0.76953 0.79156 0.79281 1.19067 1.20970 1.19069 1.19601 0.93297 0.93238 1.04818 1.21710 1.02591 0.91113 0.98191 1.21423 0.93937 0.99619 0.98086 1.21398 0.94989 0.98167 0.95410 1.21033 1.00777 0.89688 1.01029 1.18635 0.89383 0.91101 0.98506 1.67160 1.40058 0.98262 1.19318 0.91950 0.85650 0.91963 0.80858 0.91183 0.91205 0.91327 0.91283 0.98340 0.98354 0.92677 0.83826 0.82717 0.81196 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.35 113.37 1.17 1.62 16 2 O -0.31 -6.29 10.45 -89.01 -0.93 -7.22 16 3 C 0.34 7.80 7.49 85.21 0.64 8.44 16 4 C -0.10 -2.39 9.62 22.83 0.22 -2.17 16 5 C -0.05 -1.42 6.08 -18.50 -0.11 -1.53 16 6 C 0.51 16.10 7.90 70.36 0.56 16.66 16 7 O -0.51 -17.63 13.50 19.98 0.27 -17.36 16 8 O -0.34 -11.21 9.61 -56.33 -0.54 -11.75 16 9 C 0.08 2.80 5.48 71.98 0.39 3.20 16 10 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16 11 C 0.03 1.37 4.97 29.85 0.15 1.52 16 12 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 13 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 15 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 16 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 20 C -0.11 -2.76 5.90 -19.92 -0.12 -2.88 16 21 C -0.12 -2.80 9.31 22.23 0.21 -2.59 16 22 C -0.11 -1.85 9.97 22.08 0.22 -1.63 16 23 C -0.08 -1.02 9.94 22.03 0.22 -0.80 16 24 C -0.11 -1.73 9.99 22.36 0.22 -1.51 16 25 C 0.14 3.27 6.62 40.30 0.27 3.53 16 26 N -0.52 -11.94 9.00 -302.56 -2.72 -14.66 16 27 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.80 8.09 -2.38 -0.02 0.78 16 30 H 0.17 3.76 7.72 -2.91 -0.02 3.73 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.14 3.91 5.17 -2.91 -0.02 3.90 16 39 H 0.16 1.70 8.06 -2.92 -0.02 1.67 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -68.75 356.67 4.33 -64.42 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.05 Total: 8.63 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.90 Total: -11.65 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -2.44 Total: -70.90 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.20 Total: -36.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.75 4.33 -64.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850308451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.326 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds