Wall clock time and date at job start Tue Mar 31 2020 10:41:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35591 * 117.00206 * 2 1
4 4 C 1.39999 * 118.80613 * 180.02562 * 3 2 1
5 5 C 1.38797 * 119.43417 * 180.02562 * 4 3 2
6 6 C 1.47821 * 121.36395 * 179.97438 * 5 4 3
7 7 O 1.21455 * 120.00520 * 174.34772 * 6 5 4
8 8 O 1.34723 * 119.99803 * 354.35415 * 6 5 4
9 9 C 1.45195 * 116.99750 * 180.02562 * 8 6 5
10 10 C 1.53008 * 109.47060 * 179.97438 * 9 8 6
11 11 C 1.52997 * 109.47034 * 179.97438 * 10 9 8
12 12 C 1.50701 * 109.46870 * 180.02562 * 11 10 9
13 13 H 1.08004 * 120.00329 * 359.97438 * 12 11 10
14 14 C 1.37880 * 120.00031 * 180.02562 * 12 11 10
15 15 N 1.31512 * 119.99910 * 359.97438 * 14 12 11
16 16 Si 1.86796 * 119.99913 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.47296 * 59.99648 * 16 14 12
18 18 H 1.48495 * 109.47224 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.47388 * 299.99657 * 16 14 12
20 20 C 1.46341 * 117.27708 * 359.97438 * 5 4 3
21 21 C 1.39918 * 121.54393 * 180.02562 * 20 5 4
22 22 C 1.36339 * 119.58877 * 179.97438 * 21 20 5
23 23 C 1.39295 * 120.79642 * 0.02562 * 22 21 20
24 24 C 1.36127 * 121.08049 * 359.97221 * 23 22 21
25 25 C 1.40634 * 119.72558 * 0.02641 * 24 23 22
26 26 N 1.31219 * 118.80270 * 359.97438 * 3 2 1
27 27 H 1.09000 * 109.47012 * 59.99703 * 1 2 3
28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.46869 * 299.99758 * 1 2 3
30 30 H 1.08003 * 120.28177 * 359.97438 * 4 3 2
31 31 H 1.09002 * 109.47315 * 299.99530 * 9 8 6
32 32 H 1.08999 * 109.47697 * 59.99477 * 9 8 6
33 33 H 1.09002 * 109.46947 * 300.00092 * 10 9 8
34 34 H 1.09006 * 109.46832 * 59.99687 * 10 9 8
35 35 H 1.08999 * 109.47267 * 300.00136 * 11 10 9
36 36 H 1.09003 * 109.46634 * 60.00394 * 11 10 9
37 37 H 0.97003 * 119.99946 * 180.02562 * 15 14 12
38 38 H 1.08003 * 120.20604 * 0.02562 * 21 20 5
39 39 H 1.07990 * 119.60414 * 180.27335 * 22 21 20
40 40 H 1.07997 * 119.46237 * 180.02562 * 23 22 21
41 41 H 1.08002 * 120.13844 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0446 1.2081 0.0000
4 6 3.4439 1.2522 -0.0005
5 6 4.0876 2.4819 0.0000
6 6 5.5627 2.5781 0.0000
7 8 6.1006 3.6622 -0.1031
8 8 6.3104 1.4633 0.1143
9 6 7.7524 1.6333 0.1074
10 6 8.4276 0.2673 0.2465
11 6 9.9470 0.4463 0.2386
12 6 10.6120 -0.8992 0.3749
13 1 10.0111 -1.7926 0.4592
14 6 11.9878 -0.9895 0.3931
15 7 12.7196 0.0983 0.2910
16 14 12.8120 -2.6572 0.5628
17 1 12.4103 -3.5258 -0.5728
18 1 14.2867 -2.4836 0.5551
19 1 12.3942 -3.2882 1.8405
20 6 3.2463 3.6793 0.0005
21 6 3.8012 4.9637 0.0006
22 6 2.9797 6.0519 0.0005
23 6 1.5951 5.9002 0.0010
24 6 1.0235 4.6648 0.0010
25 6 1.8390 3.5191 0.0010
26 7 1.3072 2.2935 -0.0005
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 4.0176 0.3371 -0.0005
31 1 8.0592 2.0968 -0.8302
32 1 8.0472 2.2704 0.9412
33 1 8.1208 -0.1959 1.1843
34 1 8.1328 -0.3702 -0.5872
35 1 10.2535 0.9093 -0.6994
36 1 10.2420 1.0839 1.0720
37 1 13.6875 0.0347 0.3035
38 1 4.8735 5.0924 -0.0002
39 1 3.4077 7.0434 -0.0039
40 1 0.9647 6.7771 0.0006
41 1 -0.0519 4.5648 0.0010
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000850308451.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:22
Heat of formation + Delta-G solvation = -90.747139 kcal
Electronic energy + Delta-G solvation = -24648.222942 eV
Core-core repulsion = 20878.846515 eV
Total energy + Delta-G solvation = -3769.376427 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.33681 -41.30327 -39.93569 -37.99219 -37.27942 -35.96124 -34.65170 -33.65336
-31.53264 -31.03989 -29.19018 -28.41587 -26.35601 -25.04787 -24.52117 -23.79641
-22.27726 -22.02554 -19.99559 -19.24478 -18.76301 -18.31915 -18.22096 -17.81955
-17.13469 -17.06751 -16.50033 -16.14003 -16.11633 -15.76840 -15.39611 -15.00265
-14.94753 -14.55818 -14.30244 -14.07321 -13.90732 -13.77681 -13.06786 -12.94001
-12.82054 -12.79008 -12.53060 -12.50176 -12.39870 -12.13428 -11.94085 -11.73180
-11.70239 -11.53822 -11.44367 -11.28250 -10.78123 -10.56382 -9.71710 -9.24205
-8.21636 -6.32923 -1.22320 -0.30843 0.46159 1.23606 1.33718 1.42205
1.44848 1.52888 1.85562 1.89466 2.41467 2.93583 2.99260 3.12452
3.32602 3.36146 3.52860 3.85767 3.98541 3.99319 4.07136 4.22463
4.30157 4.38510 4.42961 4.45470 4.47588 4.53042 4.70093 4.78849
4.79033 4.84631 5.00054 5.06997 5.16148 5.30112 5.35812 5.47518
5.52015 5.64117 5.76143 5.80401 6.05772 6.18954 6.42060 6.56386
6.82805 7.36547 8.90330
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.018147 B = 0.002495 C = 0.002200
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1542.584546 B =11219.392382 C =12724.706655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.311 6.311
3 C 0.337 3.663
4 C -0.099 4.099
5 C -0.052 4.052
6 C 0.513 3.487
7 O -0.510 6.510
8 O -0.345 6.345
9 C 0.078 3.922
10 C -0.095 4.095
11 C 0.027 3.973
12 C -0.544 4.544
13 H 0.065 0.935
14 C -0.001 4.001
15 N -0.933 5.933
16 Si 0.967 3.033
17 H -0.266 1.266
18 H -0.284 1.284
19 H -0.266 1.266
20 C -0.107 4.107
21 C -0.118 4.118
22 C -0.113 4.113
23 C -0.080 4.080
24 C -0.107 4.107
25 C 0.143 3.857
26 N -0.520 5.520
27 H 0.062 0.938
28 H 0.125 0.875
29 H 0.062 0.938
30 H 0.174 0.826
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.068 0.932
34 H 0.068 0.932
35 H -0.002 1.002
36 H -0.002 1.002
37 H 0.265 0.735
38 H 0.144 0.856
39 H 0.155 0.845
40 H 0.171 0.829
41 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.098 8.072 -0.662 30.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.216 6.216
3 C 0.142 3.858
4 C -0.120 4.120
5 C -0.060 4.060
6 C 0.358 3.642
7 O -0.400 6.400
8 O -0.261 6.261
9 C 0.005 3.995
10 C -0.132 4.132
11 C -0.011 4.011
12 C -0.582 4.582
13 H 0.083 0.917
14 C -0.198 4.198
15 N -0.573 5.573
16 Si 0.791 3.209
17 H -0.191 1.191
18 H -0.210 1.210
19 H -0.191 1.191
20 C -0.110 4.110
21 C -0.136 4.136
22 C -0.131 4.131
23 C -0.100 4.100
24 C -0.125 4.125
25 C 0.024 3.976
26 N -0.248 5.248
27 H 0.080 0.920
28 H 0.144 0.856
29 H 0.080 0.920
30 H 0.191 0.809
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.087 0.913
35 H 0.017 0.983
36 H 0.016 0.984
37 H 0.073 0.927
38 H 0.162 0.838
39 H 0.173 0.827
40 H 0.188 0.812
41 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -29.524 8.157 -0.697 30.638
hybrid contribution 1.806 -0.494 0.040 1.873
sum -27.718 7.662 -0.657 28.765
Atomic orbital electron populations
1.23173 0.75024 1.05073 1.02726 1.86263 1.25043 1.23415 1.86903
1.19793 0.88762 0.85440 0.91781 1.21757 0.92551 0.99221 0.98441
1.20278 0.88865 0.93948 1.02942 1.20986 0.87944 0.82367 0.72912
1.90700 1.74190 1.29040 1.46049 1.86530 1.21946 1.35043 1.82579
1.23301 0.73616 1.00086 1.02497 1.21485 0.95239 0.93840 1.02677
1.18925 0.90171 0.96372 0.95601 1.21601 0.92105 0.94100 1.50372
0.91670 1.25991 0.98373 1.00798 0.94687 1.70087 1.05901 1.30120
1.51232 0.85465 0.76953 0.79156 0.79281 1.19067 1.20970 1.19069
1.19601 0.93297 0.93238 1.04818 1.21710 1.02591 0.91113 0.98191
1.21423 0.93937 0.99619 0.98086 1.21398 0.94989 0.98167 0.95410
1.21033 1.00777 0.89688 1.01029 1.18635 0.89383 0.91101 0.98506
1.67160 1.40058 0.98262 1.19318 0.91950 0.85650 0.91963 0.80858
0.91183 0.91205 0.91327 0.91283 0.98340 0.98354 0.92677 0.83826
0.82717 0.81196 0.82444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 10.35 113.37 1.17 1.62 16
2 O -0.31 -6.29 10.45 -89.01 -0.93 -7.22 16
3 C 0.34 7.80 7.49 85.21 0.64 8.44 16
4 C -0.10 -2.39 9.62 22.83 0.22 -2.17 16
5 C -0.05 -1.42 6.08 -18.50 -0.11 -1.53 16
6 C 0.51 16.10 7.90 70.36 0.56 16.66 16
7 O -0.51 -17.63 13.50 19.98 0.27 -17.36 16
8 O -0.34 -11.21 9.61 -56.33 -0.54 -11.75 16
9 C 0.08 2.80 5.48 71.98 0.39 3.20 16
10 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16
11 C 0.03 1.37 4.97 29.85 0.15 1.52 16
12 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16
13 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16
14 C 0.00 -0.03 5.46 84.66 0.46 0.43 16
15 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16
16 Si 0.97 43.81 29.54 68.60 2.03 45.84 16
17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
19 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
20 C -0.11 -2.76 5.90 -19.92 -0.12 -2.88 16
21 C -0.12 -2.80 9.31 22.23 0.21 -2.59 16
22 C -0.11 -1.85 9.97 22.08 0.22 -1.63 16
23 C -0.08 -1.02 9.94 22.03 0.22 -0.80 16
24 C -0.11 -1.73 9.99 22.36 0.22 -1.51 16
25 C 0.14 3.27 6.62 40.30 0.27 3.53 16
26 N -0.52 -11.94 9.00 -302.56 -2.72 -14.66 16
27 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16
28 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.06 0.80 8.09 -2.38 -0.02 0.78 16
30 H 0.17 3.76 7.72 -2.91 -0.02 3.73 16
31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16
34 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16
35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16
36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16
37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16
38 H 0.14 3.91 5.17 -2.91 -0.02 3.90 16
39 H 0.16 1.70 8.06 -2.92 -0.02 1.67 16
40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16
41 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16
Total: -1.00 -68.75 356.67 4.33 -64.42
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: 1.05 Total: 8.63 kcal
Atomic # 6 Polarization: -16.55 SS G_CDS: 4.90 Total: -11.65 kcal
Atomic # 7 Polarization: -68.47 SS G_CDS: -2.44 Total: -70.90 kcal
Atomic # 8 Polarization: -35.13 SS G_CDS: -1.20 Total: -36.33 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal
Total: -68.75 4.33 -64.42 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000850308451.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.326 kcal
(2) G-P(sol) polarization free energy of solvation -68.754 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds