Wall clock time and date at job start Tue Mar 31 2020 11:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00052 * 2 1 4 4 O 1.20825 * 120.00188 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99935 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47084 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47314 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.52156 * 54.91576 * 7 6 5 9 9 C 1.53031 * 109.49803 * 174.99912 * 7 6 5 10 10 C 1.53046 * 109.53726 * 181.31760 * 9 7 6 11 11 C 1.53195 * 109.30793 * 298.63346 * 10 9 7 12 12 N 1.46923 * 108.77776 * 54.63922 * 11 10 9 13 13 C 1.34770 * 120.63141 * 126.40957 * 12 11 10 14 14 O 1.21286 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50695 * 120.00355 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47518 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00227 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00332 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00370 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00124 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47458 * 59.99772 * 21 19 17 23 23 H 1.48500 * 109.47573 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47162 * 300.00150 * 21 19 17 25 25 C 1.46927 * 118.73554 * 306.38601 * 12 11 10 26 26 H 1.09003 * 109.47058 * 299.99918 * 1 2 3 27 27 H 1.08995 * 109.47196 * 59.99999 * 1 2 3 28 28 H 1.09002 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99840 * 5 3 2 30 30 H 1.08999 * 109.47274 * 299.99349 * 5 3 2 31 31 H 1.09001 * 109.46986 * 59.99831 * 6 5 3 32 32 H 1.08999 * 109.46707 * 299.99909 * 6 5 3 33 33 H 1.08995 * 109.46212 * 61.29559 * 9 7 6 34 34 H 1.09006 * 109.46201 * 301.33426 * 9 7 6 35 35 H 1.08990 * 109.49711 * 58.58414 * 10 9 7 36 36 H 1.08999 * 109.49785 * 178.68661 * 10 9 7 37 37 H 1.09009 * 109.58115 * 174.42370 * 11 10 9 38 38 H 1.08995 * 109.58619 * 294.84531 * 11 10 9 39 39 H 1.09001 * 109.47078 * 300.00169 * 15 13 12 40 40 H 1.09004 * 109.47098 * 59.99973 * 15 13 12 41 41 H 0.97000 * 120.00435 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.58956 * 293.82344 * 25 12 11 43 43 H 1.08999 * 109.70338 * 173.46710 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5281 2.8222 -0.0023 8 1 5.9220 2.2514 -0.8433 9 6 5.9628 4.2840 -0.1286 10 6 7.4909 4.3624 -0.1630 11 6 8.0564 3.8010 1.1454 12 7 7.5262 2.4457 1.3468 13 6 8.3583 1.4080 1.5637 14 8 7.9081 0.2940 1.7291 15 6 9.8481 1.6317 1.6009 16 16 10.6871 0.0579 1.9094 17 6 12.3641 0.5984 1.9015 18 1 12.5948 1.6406 1.7369 19 6 13.3886 -0.3149 2.1079 20 7 13.1076 -1.5850 2.3090 21 14 15.1665 0.2583 2.1003 22 1 15.3655 1.2686 3.1704 23 1 16.0617 -0.9017 2.3414 24 1 15.4858 0.8638 0.7825 25 6 6.0714 2.2433 1.3078 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7808 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 3.6107 3.2364 0.8889 32 1 3.6101 3.2359 -0.8911 33 1 5.5893 4.8490 0.7254 34 1 5.5568 4.7055 -1.0483 35 1 7.8663 3.7772 -1.0023 36 1 7.7994 5.4016 -0.2764 37 1 9.1443 3.7628 1.0865 38 1 7.7556 4.4384 1.9767 39 1 10.1783 2.0387 0.6451 40 1 10.0902 2.3345 2.3982 41 1 13.8236 -2.2234 2.4529 42 1 5.6087 2.7537 2.1524 43 1 5.8472 1.1778 1.3573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874537124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:13 Heat of formation + Delta-G solvation = -140.613345 kcal Electronic energy + Delta-G solvation = -23775.668214 eV Core-core repulsion = 20139.573377 eV Total energy + Delta-G solvation = -3636.094837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78959 -39.97831 -37.66541 -36.79754 -34.71200 -32.44167 -32.36604 -30.71600 -29.16587 -27.85725 -25.59456 -25.10280 -24.92422 -22.31990 -20.85466 -20.46624 -19.08016 -17.91493 -17.60085 -16.96776 -16.86691 -16.59627 -15.90394 -15.27085 -14.85333 -14.80234 -14.38496 -14.29803 -14.03557 -13.75998 -13.63659 -13.23158 -13.16784 -12.90464 -12.64894 -12.51035 -12.35314 -12.04562 -11.84223 -11.49885 -11.23182 -11.12245 -11.04669 -11.04107 -10.95030 -10.87745 -10.77240 -10.69978 -10.52998 -9.80916 -9.34496 -9.06003 -8.49740 -8.22780 -6.50116 -6.21453 -3.92145 1.92287 2.43056 2.94081 3.05734 3.23278 3.25916 3.29088 3.60114 4.20304 4.33530 4.37879 4.53182 4.67832 4.77578 4.79723 4.83373 4.84845 4.94982 5.05717 5.11216 5.13515 5.20954 5.26965 5.27666 5.40409 5.52150 5.57240 5.60197 5.67755 5.70043 5.77521 5.84749 5.89739 5.94524 5.99954 6.10469 6.12047 6.20625 6.65557 7.45140 7.56950 7.59519 8.34897 8.56721 9.23621 10.85885 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.002505 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.704314 B =11175.693704 C =12257.559263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.462 3.538 4 O -0.511 6.511 5 C -0.120 4.120 6 C -0.098 4.098 7 C -0.103 4.103 8 H 0.080 0.920 9 C -0.112 4.112 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.114 3.886 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.063 0.937 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.506 11.101 -5.831 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.399 6.399 5 C -0.158 4.158 6 C -0.137 4.137 7 C -0.123 4.123 8 H 0.098 0.902 9 C -0.150 4.150 10 C -0.174 4.174 11 C -0.017 4.017 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.009 4.009 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.322 9.536 -5.535 24.004 hybrid contribution 1.437 1.766 -0.221 2.288 sum -19.885 11.302 -5.756 23.585 Atomic orbital electron populations 1.23265 0.76394 1.03753 1.02463 1.86543 1.23444 1.33641 1.84009 1.23948 0.92409 0.81198 0.71887 1.90662 1.67409 1.36363 1.45511 1.21565 0.86988 1.00517 1.06686 1.21425 0.94615 0.93616 1.03997 1.21571 0.94262 0.97348 0.99072 0.90192 1.21536 0.95600 0.95577 1.02247 1.21930 0.95812 1.01439 0.98228 1.21730 0.99870 0.82935 0.97128 1.48080 1.06088 1.08106 1.73275 1.20331 0.88361 0.83823 0.75177 1.90685 1.77649 1.23009 1.47903 1.23551 0.93944 1.07843 1.04753 1.85392 1.01139 1.03296 1.93618 1.22815 0.91345 0.97084 1.57127 0.91009 1.24989 0.99500 0.94535 0.94545 1.70006 1.33314 1.01686 1.45276 0.86233 0.82324 0.78235 0.78752 1.19937 1.20816 1.19944 1.21638 0.80221 1.02725 0.96293 0.91907 0.91958 0.88056 0.87274 0.87025 0.90706 0.90626 0.91639 0.91603 0.91233 0.90666 0.89223 0.91554 0.89288 0.89315 0.92127 0.91840 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.49 10.56 -39.24 -0.41 -3.91 16 3 C 0.46 4.68 7.96 36.01 0.29 4.96 16 4 O -0.51 -6.34 15.73 -18.75 -0.29 -6.64 16 5 C -0.12 -0.99 5.57 -27.88 -0.16 -1.14 16 6 C -0.10 -0.79 3.98 -26.73 -0.11 -0.90 16 7 C -0.10 -0.92 2.34 -90.50 -0.21 -1.13 16 8 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 9 C -0.11 -0.88 5.17 -26.69 -0.14 -1.02 16 10 C -0.14 -1.16 6.08 -26.61 -0.16 -1.33 16 11 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 12 N -0.62 -8.54 2.97 -172.77 -0.51 -9.05 16 13 C 0.53 10.02 7.72 -10.99 -0.08 9.93 16 14 O -0.52 -11.59 15.28 5.55 0.08 -11.51 16 15 C -0.15 -3.03 4.50 36.00 0.16 -2.86 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.11 1.30 5.33 -3.71 -0.02 1.28 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.11 0.90 6.70 -51.93 -0.35 0.55 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.99 5.93 -51.92 -0.31 0.68 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 40 H 0.09 1.66 7.94 -51.91 -0.41 1.25 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.21 5.73 -51.93 -0.30 0.91 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -35.38 365.59 -8.12 -43.50 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.80 Total: -2.30 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.81 Total: -2.65 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.22 Total: -34.40 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.62 Total: -22.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.38 -8.12 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874537124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.113 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds