Wall clock time and date at job start Tue Mar 31 2020 11:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00052 * 2 1 4 4 O 1.20825 * 120.00188 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99935 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47084 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47314 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.52156 * 54.91576 * 7 6 5 9 9 C 1.53031 * 109.49803 * 174.99912 * 7 6 5 10 10 C 1.53046 * 109.53726 * 181.31760 * 9 7 6 11 11 C 1.53195 * 109.30793 * 298.63346 * 10 9 7 12 12 N 1.46923 * 108.77776 * 54.63922 * 11 10 9 13 13 C 1.34770 * 120.63141 * 126.40957 * 12 11 10 14 14 O 1.21286 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.50695 * 120.00355 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47518 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00227 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00332 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00370 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00124 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47458 * 59.99772 * 21 19 17 23 23 H 1.48500 * 109.47573 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47162 * 300.00150 * 21 19 17 25 25 C 1.46927 * 118.73554 * 306.38601 * 12 11 10 26 26 H 1.09003 * 109.47058 * 299.99918 * 1 2 3 27 27 H 1.08995 * 109.47196 * 59.99999 * 1 2 3 28 28 H 1.09002 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99840 * 5 3 2 30 30 H 1.08999 * 109.47274 * 299.99349 * 5 3 2 31 31 H 1.09001 * 109.46986 * 59.99831 * 6 5 3 32 32 H 1.08999 * 109.46707 * 299.99909 * 6 5 3 33 33 H 1.08995 * 109.46212 * 61.29559 * 9 7 6 34 34 H 1.09006 * 109.46201 * 301.33426 * 9 7 6 35 35 H 1.08990 * 109.49711 * 58.58414 * 10 9 7 36 36 H 1.08999 * 109.49785 * 178.68661 * 10 9 7 37 37 H 1.09009 * 109.58115 * 174.42370 * 11 10 9 38 38 H 1.08995 * 109.58619 * 294.84531 * 11 10 9 39 39 H 1.09001 * 109.47078 * 300.00169 * 15 13 12 40 40 H 1.09004 * 109.47098 * 59.99973 * 15 13 12 41 41 H 0.97000 * 120.00435 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.58956 * 293.82344 * 25 12 11 43 43 H 1.08999 * 109.70338 * 173.46710 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5281 2.8222 -0.0023 8 1 5.9220 2.2514 -0.8433 9 6 5.9628 4.2840 -0.1286 10 6 7.4909 4.3624 -0.1630 11 6 8.0564 3.8010 1.1454 12 7 7.5262 2.4457 1.3468 13 6 8.3583 1.4080 1.5637 14 8 7.9081 0.2940 1.7291 15 6 9.8481 1.6317 1.6009 16 16 10.6871 0.0579 1.9094 17 6 12.3641 0.5984 1.9015 18 1 12.5948 1.6406 1.7369 19 6 13.3886 -0.3149 2.1079 20 7 13.1076 -1.5850 2.3090 21 14 15.1665 0.2583 2.1003 22 1 15.3655 1.2686 3.1704 23 1 16.0617 -0.9017 2.3414 24 1 15.4858 0.8638 0.7825 25 6 6.0714 2.2433 1.3078 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7808 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 3.6107 3.2364 0.8889 32 1 3.6101 3.2359 -0.8911 33 1 5.5893 4.8490 0.7254 34 1 5.5568 4.7055 -1.0483 35 1 7.8663 3.7772 -1.0023 36 1 7.7994 5.4016 -0.2764 37 1 9.1443 3.7628 1.0865 38 1 7.7556 4.4384 1.9767 39 1 10.1783 2.0387 0.6451 40 1 10.0902 2.3345 2.3982 41 1 13.8236 -2.2234 2.4529 42 1 5.6087 2.7537 2.1524 43 1 5.8472 1.1778 1.3573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874537124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:12 Heat of formation + Delta-G solvation = -162.428148 kcal Electronic energy + Delta-G solvation = -23776.614175 eV Core-core repulsion = 20139.573377 eV Total energy + Delta-G solvation = -3637.040798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58961 -41.11976 -38.77391 -37.61540 -35.65156 -34.57605 -33.29388 -31.73105 -30.40114 -28.52621 -27.68504 -26.10930 -25.77996 -23.11292 -21.72263 -21.27097 -20.35264 -19.45874 -18.64469 -18.11471 -17.71248 -17.47715 -17.01692 -16.86667 -16.56261 -15.97119 -15.63799 -15.19759 -14.97647 -14.69585 -14.58580 -14.47206 -14.26009 -14.01022 -13.75419 -13.46663 -13.34981 -13.14999 -13.04903 -12.85915 -12.68672 -12.62013 -12.21981 -11.94012 -11.83299 -11.75877 -11.72264 -11.60754 -11.51186 -11.27327 -11.11975 -10.81787 -10.25226 -9.62344 -8.66189 -8.33465 -6.11802 1.13882 1.26893 1.44640 1.46910 1.56462 1.59898 1.77508 2.13994 2.28735 3.00440 3.26853 3.59464 3.67707 3.77652 3.84015 3.97188 4.09820 4.19542 4.26188 4.26804 4.28644 4.31804 4.35238 4.44905 4.51451 4.58268 4.64698 4.69911 4.80857 4.87702 4.91060 4.95611 5.10088 5.14714 5.24553 5.28941 5.38527 5.42333 5.51210 5.62505 6.20461 6.32718 6.69000 7.07521 7.17159 8.75482 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.002505 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.704314 B =11175.693704 C =12257.559263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.464 3.536 4 O -0.537 6.537 5 C -0.120 4.120 6 C -0.089 4.089 7 C -0.092 4.092 8 H 0.071 0.929 9 C -0.110 4.110 10 C -0.130 4.130 11 C 0.096 3.904 12 N -0.606 5.606 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.123 4.123 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.109 3.891 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.484 13.803 -6.443 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.309 3.691 4 O -0.427 6.427 5 C -0.157 4.157 6 C -0.127 4.127 7 C -0.112 4.112 8 H 0.089 0.911 9 C -0.147 4.147 10 C -0.168 4.168 11 C -0.026 4.026 12 N -0.340 5.340 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.274 4.274 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.013 4.013 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.331 12.289 -6.161 25.378 hybrid contribution 1.270 0.985 -0.040 1.608 sum -20.061 13.274 -6.201 24.841 Atomic orbital electron populations 1.23525 0.74940 1.05551 1.02549 1.86536 1.25030 1.33465 1.83699 1.24231 0.92947 0.80941 0.71027 1.90644 1.68082 1.37085 1.46912 1.21626 0.85934 1.00997 1.07167 1.21333 0.93749 0.93359 1.04228 1.21468 0.94587 0.98120 0.97000 0.91082 1.21556 0.95080 0.94512 1.03577 1.21912 0.96150 1.02488 0.96284 1.22073 0.99865 0.81253 0.99364 1.48098 1.06685 1.08238 1.70953 1.20105 0.88149 0.84269 0.75529 1.90668 1.78107 1.25073 1.50625 1.23367 0.94501 1.03498 1.06069 1.85570 1.02953 1.09810 1.94150 1.23158 0.91496 0.97676 1.57030 0.89915 1.26133 1.04796 0.94492 0.93758 1.70178 1.34936 1.03207 1.46452 0.85012 0.75621 0.77937 0.79478 1.18625 1.20450 1.18600 1.21855 0.78696 1.02220 0.98569 0.91956 0.91765 0.85502 0.86295 0.87019 0.90674 0.90125 0.90488 0.90100 0.92348 0.88158 0.89611 0.89302 0.87588 0.87635 0.92000 0.90110 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.37 -7.00 10.56 -51.35 -0.54 -7.54 16 3 C 0.46 9.13 7.96 71.24 0.57 9.69 16 4 O -0.54 -12.97 15.73 21.97 0.35 -12.62 16 5 C -0.12 -1.88 5.57 29.85 0.17 -1.72 16 6 C -0.09 -1.28 3.98 30.60 0.12 -1.15 16 7 C -0.09 -1.46 2.34 -10.72 -0.03 -1.49 16 8 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 9 C -0.11 -1.35 5.17 30.62 0.16 -1.19 16 10 C -0.13 -1.80 6.08 30.67 0.19 -1.61 16 11 C 0.10 1.77 6.34 86.36 0.55 2.32 16 12 N -0.61 -15.89 2.97 -818.92 -2.43 -18.32 16 13 C 0.53 19.96 7.72 87.66 0.68 20.63 16 14 O -0.57 -26.21 15.28 -3.05 -0.05 -26.26 16 15 C -0.12 -4.93 4.50 71.23 0.32 -4.61 16 16 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 17 C -0.55 -31.09 9.50 67.95 0.65 -30.45 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 21 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 C 0.11 2.35 5.33 86.36 0.46 2.81 16 26 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 27 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.78 6.70 -2.39 -0.02 1.76 16 31 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.66 5.93 -2.38 -0.01 1.65 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 3.85 7.69 -2.39 -0.02 3.83 16 40 H 0.11 3.84 7.94 -2.39 -0.02 3.82 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.95 5.73 -2.39 -0.01 1.93 16 Total: -1.00 -79.11 365.59 4.96 -74.16 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.99 Total: 14.60 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.49 Total: -4.02 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.15 Total: -74.05 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.24 Total: -46.42 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -79.11 4.96 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874537124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.273 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds