Wall clock time and date at job start Tue Mar 31 2020 11:01:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 113.99688 * 2 1
4 4 C 1.53006 * 109.46923 * 180.02562 * 3 2 1
5 5 O 1.42902 * 109.46952 * 65.00219 * 4 3 2
6 6 C 1.35907 * 116.99857 * 179.97438 * 5 4 3
7 7 C 1.38839 * 119.99269 * 359.97438 * 6 5 4
8 8 C 1.38216 * 120.19756 * 180.02562 * 7 6 5
9 9 C 1.38048 * 120.18933 * 359.97438 * 8 7 6
10 10 C 1.39400 * 119.98439 * 0.02562 * 9 8 7
11 11 C 1.48296 * 120.10210 * 179.97438 * 10 9 8
12 12 C 1.39423 * 119.65056 * 4.97784 * 11 10 9
13 13 C 1.38218 * 119.14879 * 179.72237 * 12 11 10
14 14 C 1.39423 * 118.45090 * 0.54056 * 13 12 11
15 15 O 1.35709 * 120.38816 * 179.75829 * 14 13 12
16 16 C 1.34812 * 116.99834 * 5.18169 * 15 14 13
17 17 H 1.08000 * 119.99990 * 354.92006 * 16 15 14
18 18 C 1.38655 * 119.99857 * 174.92905 * 16 15 14
19 19 N 1.31552 * 120.00313 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 119.99811 * 179.72287 * 18 16 15
21 21 H 1.48495 * 109.47446 * 270.27160 * 20 18 16
22 22 H 1.48501 * 109.47361 * 30.27287 * 20 18 16
23 23 H 1.48507 * 109.47027 * 150.27084 * 20 18 16
24 24 C 1.38965 * 119.22816 * 359.47638 * 14 13 12
25 25 N 1.31666 * 120.78649 * 0.25949 * 24 14 13
26 26 C 1.38486 * 119.99182 * 180.25334 * 6 5 4
27 27 H 1.08995 * 109.47211 * 59.99928 * 1 2 3
28 28 H 1.09000 * 109.46884 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47042 * 299.99964 * 1 2 3
30 30 H 1.08995 * 109.47278 * 60.00042 * 3 2 1
31 31 H 1.08999 * 109.47089 * 299.99806 * 3 2 1
32 32 H 1.08991 * 109.47439 * 305.00213 * 4 3 2
33 33 H 1.09003 * 109.46910 * 184.99800 * 4 3 2
34 34 H 1.08001 * 119.90407 * 0.02562 * 7 6 5
35 35 H 1.08006 * 119.90561 * 179.97438 * 8 7 6
36 36 H 1.07998 * 120.01336 * 179.97438 * 9 8 7
37 37 H 1.08000 * 120.42301 * 0.02562 * 12 11 10
38 38 H 1.08000 * 120.77656 * 180.29592 * 13 12 11
39 39 H 0.97000 * 119.99792 * 359.72572 * 19 18 16
40 40 H 1.08002 * 119.61081 * 180.22699 * 24 14 13
41 41 H 1.08000 * 120.09444 * 0.02562 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 -0.0006
5 8 3.9648 0.5798 -1.2220
6 6 5.3020 0.3989 -1.3842
7 6 6.1822 0.7968 -0.3870
8 6 7.5429 0.6154 -0.5477
9 6 8.0347 0.0370 -1.7006
10 6 7.1580 -0.3654 -2.7069
11 6 7.6835 -0.9865 -3.9468
12 6 9.0460 -1.2608 -4.0569
13 6 9.5237 -1.8451 -5.2148
14 6 8.6197 -2.1284 -6.2377
15 8 9.0468 -2.6974 -7.3933
16 6 10.3426 -3.0649 -7.4521
17 1 11.0086 -2.8283 -6.6355
18 6 10.8202 -3.7465 -8.5611
19 7 10.0089 -4.0350 -9.5556
20 14 12.6174 -4.2488 -8.6460
21 1 13.4063 -3.1607 -9.2773
22 1 13.1272 -4.4977 -7.2737
23 1 12.7474 -5.4877 -9.4546
24 6 7.2752 -1.8267 -6.0578
25 7 6.8520 -1.2750 -4.9397
26 6 5.7867 -0.1769 -2.5467
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.6886 1.8464 0.8899
31 1 1.6886 1.8464 -0.8900
32 1 3.8515 0.5683 0.8408
33 1 3.9785 2.1766 0.0889
34 1 5.8025 1.2495 0.5171
35 1 8.2234 0.9271 0.2310
36 1 9.0985 -0.1031 -1.8234
37 1 9.7188 -1.0242 -3.2458
38 1 10.5735 -2.0733 -5.3262
39 1 9.0756 -3.7745 -9.5114
40 1 6.5689 -2.0469 -6.8446
41 1 5.1035 -0.4824 -3.3253
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000904751612.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:37
Heat of formation + Delta-G solvation = -54.629488 kcal
Electronic energy + Delta-G solvation = -24229.809601 eV
Core-core repulsion = 20461.999353 eV
Total energy + Delta-G solvation = -3767.810248 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.23432 -39.62017 -38.31213 -37.62790 -36.72368 -32.67840 -31.80538 -31.57455
-31.20043 -29.37093 -28.18723 -26.66650 -25.34268 -23.89356 -23.29931 -22.52934
-21.67280 -20.73236 -18.69439 -18.23508 -17.14524 -17.05724 -16.46177 -16.06356
-15.85213 -15.59700 -15.33288 -15.25723 -14.57908 -14.25249 -14.02495 -14.01603
-13.75804 -13.34296 -13.18842 -13.02240 -12.74304 -12.58591 -12.22214 -12.12980
-11.72369 -11.56981 -11.40900 -11.06545 -10.93842 -10.78643 -10.66457 -10.42111
-10.05894 -9.97540 -9.24944 -9.12844 -8.86158 -8.72825 -8.13961 -7.30656
-6.99598 -4.25799 1.04913 1.60208 1.95164 2.31913 3.08216 3.14154
3.20145 3.33414 3.37912 3.90140 3.94545 4.53089 4.61074 4.62637
4.74422 4.84897 4.87848 4.93638 4.96187 5.00714 5.02620 5.05876
5.11177 5.29028 5.31487 5.36075 5.40683 5.57043 5.67816 5.73640
5.79609 6.03052 6.17903 6.39922 6.42015 6.51957 6.60265 6.75592
6.84971 6.90527 6.94529 7.26287 7.34797 7.48945 8.15196 8.61273
8.68866 9.31298 10.43853
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.025844 B = 0.002213 C = 0.002062
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.183728 B =12647.936033 C =13574.126001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.383 6.383
3 C 0.062 3.938
4 C 0.062 3.938
5 O -0.307 6.307
6 C 0.127 3.873
7 C -0.223 4.223
8 C -0.080 4.080
9 C -0.158 4.158
10 C 0.036 3.964
11 C 0.037 3.963
12 C -0.095 4.095
13 C -0.200 4.200
14 C 0.111 3.889
15 O -0.182 6.182
16 C -0.471 4.471
17 H 0.088 0.912
18 C 0.014 3.986
19 N -0.867 5.867
20 Si 1.100 2.900
21 H -0.278 1.278
22 H -0.281 1.281
23 H -0.273 1.273
24 C 0.033 3.967
25 N -0.427 5.427
26 C -0.131 4.131
27 H 0.043 0.957
28 H 0.087 0.913
29 H 0.040 0.960
30 H 0.069 0.931
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.076 0.924
34 H 0.121 0.879
35 H 0.122 0.878
36 H 0.125 0.875
37 H 0.124 0.876
38 H 0.140 0.860
39 H 0.286 0.714
40 H 0.152 0.848
41 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.081 10.511 19.481 24.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.302 6.302
3 C -0.014 4.014
4 C -0.014 4.014
5 O -0.221 6.221
6 C 0.082 3.918
7 C -0.242 4.242
8 C -0.098 4.098
9 C -0.177 4.177
10 C 0.035 3.965
11 C -0.097 4.097
12 C -0.115 4.115
13 C -0.225 4.225
14 C 0.053 3.947
15 O -0.083 6.083
16 C -0.546 4.546
17 H 0.105 0.895
18 C -0.194 4.194
19 N -0.497 5.497
20 Si 0.923 3.077
21 H -0.204 1.204
22 H -0.206 1.206
23 H -0.198 1.198
24 C -0.132 4.132
25 N -0.136 5.136
26 C -0.150 4.150
27 H 0.061 0.939
28 H 0.106 0.894
29 H 0.058 0.942
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.088 0.912
33 H 0.094 0.906
34 H 0.139 0.861
35 H 0.140 0.860
36 H 0.143 0.857
37 H 0.142 0.858
38 H 0.157 0.843
39 H 0.096 0.904
40 H 0.170 0.830
41 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -9.968 9.620 18.206 22.878
hybrid contribution -0.260 0.995 1.217 1.593
sum -10.229 10.615 19.423 24.384
Atomic orbital electron populations
1.22764 0.80858 1.03060 0.99889 1.87992 1.19792 1.27039 1.95385
1.22581 0.91732 0.85823 1.01295 1.22782 0.93526 0.98137 0.86939
1.86137 1.20363 1.77034 1.38568 1.18888 0.82044 0.96277 0.94547
1.21129 0.94296 1.08904 0.99910 1.20723 0.94404 0.97651 0.97039
1.21081 0.99654 1.02837 0.94114 1.18247 0.91892 0.94639 0.91742
1.19032 0.89982 1.06879 0.93775 1.21716 0.95246 0.97135 0.97415
1.21478 1.01084 1.05622 0.94357 1.20409 0.93969 0.93580 0.86693
1.83641 1.29665 1.65562 1.29469 1.22365 0.82539 1.40673 1.09058
0.89458 1.26690 1.08039 0.93961 0.90695 1.70545 1.07745 1.40389
1.30978 0.83040 0.70573 0.77542 0.76563 1.20445 1.20604 1.19799
1.21743 0.91588 1.03684 0.96138 1.67335 1.37926 1.08765 0.99618
1.20497 0.95213 1.02676 0.96619 0.93867 0.89428 0.94167 0.91259
0.92018 0.91213 0.90578 0.86077 0.85976 0.85738 0.85792 0.84267
0.90400 0.83049 0.84243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 11.01 101.05 1.11 1.33 16
2 O -0.38 -4.13 10.67 -40.08 -0.43 -4.56 16
3 C 0.06 0.51 6.32 37.16 0.23 0.75 16
4 C 0.06 0.58 5.12 37.16 0.19 0.77 16
5 O -0.31 -4.26 10.10 -24.30 -0.25 -4.51 16
6 C 0.13 1.86 6.68 -39.27 -0.26 1.60 16
7 C -0.22 -2.74 9.03 -39.37 -0.36 -3.09 16
8 C -0.08 -0.97 10.03 -39.66 -0.40 -1.37 16
9 C -0.16 -2.23 9.41 -39.22 -0.37 -2.60 16
10 C 0.04 0.61 5.87 -104.92 -0.62 -0.01 16
11 C 0.04 0.73 6.72 -82.92 -0.56 0.17 16
12 C -0.10 -1.78 9.44 -39.15 -0.37 -2.15 16
13 C -0.20 -4.24 9.25 -39.15 -0.36 -4.60 16
14 C 0.11 2.61 6.67 -38.87 -0.26 2.35 16
15 O -0.18 -4.89 9.17 0.23 0.00 -4.89 16
16 C -0.47 -12.57 9.50 30.89 0.29 -12.28 16
17 H 0.09 2.17 5.25 -52.49 -0.28 1.90 16
18 C 0.01 0.36 5.49 -17.52 -0.10 0.26 16
19 N -0.87 -24.72 13.70 55.48 0.76 -23.96 16
20 Si 1.10 22.52 29.92 -169.99 -5.09 17.43 16
21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16
22 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16
23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16
24 C 0.03 0.71 11.14 -17.35 -0.19 0.52 16
25 N -0.43 -8.94 9.43 -9.61 -0.09 -9.03 16
26 C -0.13 -2.20 9.51 -39.08 -0.37 -2.57 16
27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16
28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
32 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16
33 H 0.08 0.54 7.66 -51.93 -0.40 0.14 16
34 H 0.12 1.13 6.28 -52.49 -0.33 0.80 16
35 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16
36 H 0.12 1.55 6.20 -52.49 -0.33 1.22 16
37 H 0.12 1.87 6.21 -52.49 -0.33 1.55 16
38 H 0.14 2.88 5.75 -52.49 -0.30 2.57 16
39 H 0.29 8.31 7.97 -40.82 -0.33 7.99 16
40 H 0.15 3.02 8.06 -52.49 -0.42 2.59 16
41 H 0.14 2.50 7.54 -52.49 -0.40 2.10 16
LS Contribution 352.83 15.07 5.32 5.32
Total: -1.00 -31.72 352.83 -6.98 -38.70
By element:
Atomic # 1 Polarization: 11.25 SS G_CDS: -4.83 Total: 6.42 kcal
Atomic # 6 Polarization: -18.54 SS G_CDS: -2.38 Total: -20.92 kcal
Atomic # 7 Polarization: -33.66 SS G_CDS: 0.67 Total: -32.99 kcal
Atomic # 8 Polarization: -13.28 SS G_CDS: -0.67 Total: -13.95 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.09 Total: 17.43 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -31.72 -6.98 -38.70 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000904751612.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal
(2) G-P(sol) polarization free energy of solvation -31.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds