Wall clock time and date at job start Tue Mar 31 2020 11:01:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 113.99688 * 2 1
4 4 C 1.53006 * 109.46923 * 180.02562 * 3 2 1
5 5 O 1.42902 * 109.46952 * 65.00219 * 4 3 2
6 6 C 1.35907 * 116.99857 * 179.97438 * 5 4 3
7 7 C 1.38839 * 119.99269 * 359.97438 * 6 5 4
8 8 C 1.38216 * 120.19756 * 180.02562 * 7 6 5
9 9 C 1.38048 * 120.18933 * 359.97438 * 8 7 6
10 10 C 1.39400 * 119.98439 * 0.02562 * 9 8 7
11 11 C 1.48296 * 120.10210 * 179.97438 * 10 9 8
12 12 C 1.39423 * 119.65056 * 4.97784 * 11 10 9
13 13 C 1.38218 * 119.14879 * 179.72237 * 12 11 10
14 14 C 1.39423 * 118.45090 * 0.54056 * 13 12 11
15 15 O 1.35709 * 120.38816 * 179.75829 * 14 13 12
16 16 C 1.34812 * 116.99834 * 5.18169 * 15 14 13
17 17 H 1.08000 * 119.99990 * 354.92006 * 16 15 14
18 18 C 1.38655 * 119.99857 * 174.92905 * 16 15 14
19 19 N 1.31552 * 120.00313 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 119.99811 * 179.72287 * 18 16 15
21 21 H 1.48495 * 109.47446 * 270.27160 * 20 18 16
22 22 H 1.48501 * 109.47361 * 30.27287 * 20 18 16
23 23 H 1.48507 * 109.47027 * 150.27084 * 20 18 16
24 24 C 1.38965 * 119.22816 * 359.47638 * 14 13 12
25 25 N 1.31666 * 120.78649 * 0.25949 * 24 14 13
26 26 C 1.38486 * 119.99182 * 180.25334 * 6 5 4
27 27 H 1.08995 * 109.47211 * 59.99928 * 1 2 3
28 28 H 1.09000 * 109.46884 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47042 * 299.99964 * 1 2 3
30 30 H 1.08995 * 109.47278 * 60.00042 * 3 2 1
31 31 H 1.08999 * 109.47089 * 299.99806 * 3 2 1
32 32 H 1.08991 * 109.47439 * 305.00213 * 4 3 2
33 33 H 1.09003 * 109.46910 * 184.99800 * 4 3 2
34 34 H 1.08001 * 119.90407 * 0.02562 * 7 6 5
35 35 H 1.08006 * 119.90561 * 179.97438 * 8 7 6
36 36 H 1.07998 * 120.01336 * 179.97438 * 9 8 7
37 37 H 1.08000 * 120.42301 * 0.02562 * 12 11 10
38 38 H 1.08000 * 120.77656 * 180.29592 * 13 12 11
39 39 H 0.97000 * 119.99792 * 359.72572 * 19 18 16
40 40 H 1.08002 * 119.61081 * 180.22699 * 24 14 13
41 41 H 1.08000 * 120.09444 * 0.02562 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 -0.0006
5 8 3.9648 0.5798 -1.2220
6 6 5.3020 0.3989 -1.3842
7 6 6.1822 0.7968 -0.3870
8 6 7.5429 0.6154 -0.5477
9 6 8.0347 0.0370 -1.7006
10 6 7.1580 -0.3654 -2.7069
11 6 7.6835 -0.9865 -3.9468
12 6 9.0460 -1.2608 -4.0569
13 6 9.5237 -1.8451 -5.2148
14 6 8.6197 -2.1284 -6.2377
15 8 9.0468 -2.6974 -7.3933
16 6 10.3426 -3.0649 -7.4521
17 1 11.0086 -2.8283 -6.6355
18 6 10.8202 -3.7465 -8.5611
19 7 10.0089 -4.0350 -9.5556
20 14 12.6174 -4.2488 -8.6460
21 1 13.4063 -3.1607 -9.2773
22 1 13.1272 -4.4977 -7.2737
23 1 12.7474 -5.4877 -9.4546
24 6 7.2752 -1.8267 -6.0578
25 7 6.8520 -1.2750 -4.9397
26 6 5.7867 -0.1769 -2.5467
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.6886 1.8464 0.8899
31 1 1.6886 1.8464 -0.8900
32 1 3.8515 0.5683 0.8408
33 1 3.9785 2.1766 0.0889
34 1 5.8025 1.2495 0.5171
35 1 8.2234 0.9271 0.2310
36 1 9.0985 -0.1031 -1.8234
37 1 9.7188 -1.0242 -3.2458
38 1 10.5735 -2.0733 -5.3262
39 1 9.0756 -3.7745 -9.5114
40 1 6.5689 -2.0469 -6.8446
41 1 5.1035 -0.4824 -3.3253
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000904751612.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:36
Heat of formation + Delta-G solvation = -74.895463 kcal
Electronic energy + Delta-G solvation = -24230.688400 eV
Core-core repulsion = 20461.999353 eV
Total energy + Delta-G solvation = -3768.689047 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.62239 -40.95706 -39.49458 -38.81320 -37.89495 -34.53662 -33.33465 -32.91557
-32.19169 -30.39976 -29.63952 -27.29814 -27.14415 -25.01493 -24.82727 -23.73384
-22.94055 -21.97484 -20.44445 -19.47005 -18.71055 -17.83602 -17.74826 -17.29769
-16.95149 -16.63196 -16.40628 -16.17955 -16.05078 -15.69276 -15.56093 -15.53285
-15.15919 -14.62145 -14.50333 -14.28173 -14.09134 -13.53553 -13.44758 -13.16697
-12.67492 -12.61009 -12.58529 -12.46001 -12.31298 -11.92300 -11.85709 -11.83831
-11.72997 -10.95312 -10.71388 -10.68447 -10.52193 -10.24537 -9.28083 -9.02230
-8.86579 -6.31701 -0.30250 0.26453 0.51595 0.85990 1.50009 1.62970
1.77981 2.20471 2.29840 2.60759 2.80129 2.93651 3.02498 3.17422
3.37288 3.69793 3.86516 3.92809 4.00615 4.08849 4.10564 4.17970
4.29096 4.33516 4.40030 4.43497 4.50378 4.52566 4.53926 4.66699
4.71035 4.83454 4.84848 4.90112 5.09216 5.18112 5.32254 5.38409
5.47372 5.58727 5.68200 5.84285 6.11458 6.17895 6.50512 6.74017
6.97363 7.44949 8.42121
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.025844 B = 0.002213 C = 0.002062
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.183728 B =12647.936033 C =13574.126001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.420 6.420
3 C 0.058 3.942
4 C 0.051 3.949
5 O -0.333 6.333
6 C 0.119 3.881
7 C -0.205 4.205
8 C -0.071 4.071
9 C -0.153 4.153
10 C 0.001 3.999
11 C 0.057 3.943
12 C -0.092 4.092
13 C -0.194 4.194
14 C 0.082 3.918
15 O -0.230 6.230
16 C -0.490 4.490
17 H 0.100 0.900
18 C -0.039 4.039
19 N -0.909 5.909
20 Si 1.148 2.852
21 H -0.263 1.263
22 H -0.255 1.255
23 H -0.275 1.275
24 C 0.024 3.976
25 N -0.445 5.445
26 C -0.154 4.154
27 H 0.045 0.955
28 H 0.089 0.911
29 H 0.061 0.939
30 H 0.104 0.896
31 H 0.059 0.941
32 H 0.077 0.923
33 H 0.104 0.896
34 H 0.159 0.841
35 H 0.166 0.834
36 H 0.147 0.853
37 H 0.171 0.829
38 H 0.147 0.853
39 H 0.264 0.736
40 H 0.155 0.845
41 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.041 12.805 24.540 29.119
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.340 6.340
3 C -0.018 4.018
4 C -0.023 4.023
5 O -0.247 6.247
6 C 0.074 3.926
7 C -0.224 4.224
8 C -0.088 4.088
9 C -0.171 4.171
10 C 0.000 4.000
11 C -0.079 4.079
12 C -0.111 4.111
13 C -0.220 4.220
14 C 0.028 3.972
15 O -0.134 6.134
16 C -0.566 4.566
17 H 0.117 0.883
18 C -0.237 4.237
19 N -0.542 5.542
20 Si 0.963 3.037
21 H -0.188 1.188
22 H -0.179 1.179
23 H -0.200 1.200
24 C -0.137 4.137
25 N -0.154 5.154
26 C -0.173 4.173
27 H 0.064 0.936
28 H 0.107 0.893
29 H 0.080 0.920
30 H 0.122 0.878
31 H 0.077 0.923
32 H 0.096 0.904
33 H 0.122 0.878
34 H 0.176 0.824
35 H 0.184 0.816
36 H 0.165 0.835
37 H 0.189 0.811
38 H 0.164 0.836
39 H 0.072 0.928
40 H 0.173 0.827
41 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -8.981 11.948 23.304 27.686
hybrid contribution -0.935 0.583 0.189 1.118
sum -9.916 12.531 23.493 28.413
Atomic orbital electron populations
1.22911 0.79405 1.03644 1.01064 1.87934 1.21611 1.28768 1.95666
1.22782 0.91026 0.85186 1.02811 1.23187 0.94435 0.99358 0.85329
1.86123 1.20035 1.77541 1.41028 1.18956 0.83036 0.96234 0.94403
1.21602 0.94181 1.06608 1.00002 1.21230 0.94933 0.95703 0.96972
1.21384 1.00279 1.01786 0.93698 1.18269 0.92558 0.97303 0.91854
1.19789 0.90478 1.03694 0.93904 1.22120 0.95515 0.95846 0.97601
1.21736 1.01125 1.04707 0.94435 1.20815 0.95087 0.94179 0.87141
1.83648 1.29987 1.68544 1.31258 1.22728 0.83011 1.41137 1.09684
0.88283 1.28472 1.11671 0.93410 0.90133 1.70677 1.06914 1.43860
1.32711 0.82543 0.65778 0.77445 0.77940 1.18812 1.17883 1.19999
1.21892 0.91430 1.03685 0.96728 1.67455 1.38600 1.09488 0.99857
1.20431 0.95154 1.04287 0.97464 0.93611 0.89297 0.92012 0.87788
0.92309 0.90447 0.87768 0.82372 0.81621 0.83538 0.81149 0.83594
0.92767 0.82733 0.86989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 11.01 113.37 1.25 1.58 16
2 O -0.42 -8.48 10.67 -144.34 -1.54 -10.02 16
3 C 0.06 0.81 6.32 71.98 0.45 1.26 16
4 C 0.05 0.80 5.12 71.98 0.37 1.17 16
5 O -0.33 -8.72 10.10 -87.87 -0.89 -9.61 16
6 C 0.12 3.22 6.68 22.47 0.15 3.37 16
7 C -0.21 -4.01 9.03 22.41 0.20 -3.81 16
8 C -0.07 -1.29 10.03 22.22 0.22 -1.07 16
9 C -0.15 -3.62 9.41 22.50 0.21 -3.41 16
10 C 0.00 0.03 5.87 -20.06 -0.12 -0.08 16
11 C 0.06 2.18 6.72 41.98 0.28 2.46 16
12 C -0.09 -3.22 9.44 22.55 0.21 -3.00 16
13 C -0.19 -8.18 9.25 22.55 0.21 -7.97 16
14 C 0.08 4.00 6.67 22.73 0.15 4.16 16
15 O -0.23 -13.14 9.17 -22.11 -0.20 -13.34 16
16 C -0.49 -27.31 9.50 67.92 0.64 -26.67 16
17 H 0.10 5.02 5.25 -2.91 -0.02 5.01 16
18 C -0.04 -2.16 5.49 84.83 0.47 -1.69 16
19 N -0.91 -55.13 13.70 21.61 0.30 -54.84 16
20 Si 1.15 45.89 29.92 68.60 2.05 47.94 16
21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16
22 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16
23 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16
24 C 0.02 1.09 11.14 84.89 0.95 2.04 16
25 N -0.44 -19.11 9.43 -184.31 -1.74 -20.85 16
26 C -0.15 -5.11 9.51 22.59 0.21 -4.89 16
27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16
28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16
33 H 0.10 1.00 7.66 -2.39 -0.02 0.98 16
34 H 0.16 1.92 6.28 -2.91 -0.02 1.90 16
35 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16
36 H 0.15 2.77 6.20 -2.91 -0.02 2.75 16
37 H 0.17 4.34 6.21 -2.91 -0.02 4.32 16
38 H 0.15 5.92 5.75 -2.91 -0.02 5.90 16
39 H 0.26 16.68 7.97 -92.71 -0.74 15.95 16
40 H 0.16 6.71 8.06 -2.91 -0.02 6.69 16
41 H 0.11 4.22 7.54 -2.91 -0.02 4.20 16
Total: -1.00 -75.80 352.83 4.94 -70.85
By element:
Atomic # 1 Polarization: 25.34 SS G_CDS: 1.09 Total: 26.43 kcal
Atomic # 6 Polarization: -42.43 SS G_CDS: 5.87 Total: -36.56 kcal
Atomic # 7 Polarization: -74.25 SS G_CDS: -1.44 Total: -75.69 kcal
Atomic # 8 Polarization: -30.34 SS G_CDS: -2.63 Total: -32.97 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 2.05 Total: 47.94 kcal
Total: -75.80 4.94 -70.85 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000904751612.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.042 kcal
(2) G-P(sol) polarization free energy of solvation -75.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds