Wall clock time and date at job start Tue Mar 31 2020 10:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47233 * 2 1 4 4 C 1.42899 * 114.00219 * 180.02562 * 3 2 1 5 5 O 1.42909 * 109.46966 * 74.99696 * 4 3 2 6 6 C 1.35868 * 116.99843 * 75.00302 * 5 4 3 7 7 C 1.38544 * 120.54889 * 0.02562 * 6 5 4 8 8 N 1.31872 * 120.79593 * 179.97438 * 7 6 5 9 9 C 1.31938 * 122.07178 * 0.02562 * 8 7 6 10 10 C 1.37950 * 121.01653 * 359.74514 * 9 8 7 11 11 C 1.39775 * 119.07289 * 0.48405 * 10 9 8 12 12 C 1.48234 * 120.93173 * 179.79878 * 11 10 9 13 13 C 1.39483 * 120.05489 * 130.00789 * 12 11 10 14 14 C 1.37824 * 119.93913 * 180.23010 * 13 12 11 15 15 C 1.39006 * 120.05727 * 359.48072 * 14 13 12 16 16 O 1.35688 * 119.94221 * 180.24590 * 15 14 13 17 17 C 1.34816 * 117.00253 * 354.45587 * 16 15 14 18 18 H 1.08001 * 119.99872 * 5.05622 * 17 16 15 19 19 C 1.38649 * 120.00076 * 185.05195 * 17 16 15 20 20 N 1.31557 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99966 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47119 * 60.00106 * 21 19 17 23 23 H 1.48502 * 109.46940 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47014 * 299.99827 * 21 19 17 25 25 C 1.39012 * 120.11181 * 0.27676 * 15 14 13 26 26 C 1.37810 * 120.05634 * 359.97071 * 25 15 14 27 27 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46795 * 299.99864 * 1 2 3 29 29 H 1.08997 * 109.47141 * 59.99806 * 1 2 3 30 30 H 1.09006 * 109.46688 * 239.99921 * 2 1 3 31 31 H 1.08997 * 109.47141 * 120.00194 * 2 1 3 32 32 H 1.09001 * 109.47042 * 314.99804 * 4 3 2 33 33 H 1.08996 * 109.47262 * 194.99574 * 4 3 2 34 34 H 1.08001 * 119.60270 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.49602 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.46758 * 180.28817 * 10 9 8 37 37 H 1.07990 * 120.02851 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96368 * 179.75077 * 14 13 12 39 39 H 0.97003 * 120.00084 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.96950 * 180.02562 * 25 15 14 41 41 H 1.08006 * 120.03048 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 8 3.9327 1.1502 -1.3023 6 6 3.7676 2.0922 -2.2673 7 6 3.1385 3.2925 -1.9795 8 7 2.9761 4.2104 -2.9123 9 6 3.3984 4.0341 -4.1497 10 6 4.0395 2.8711 -4.5231 11 6 4.2311 1.8655 -3.5713 12 6 4.9108 0.5976 -3.9287 13 6 5.9568 0.1192 -3.1397 14 6 6.5903 -1.0575 -3.4768 15 6 6.1804 -1.7729 -4.5960 16 8 6.8024 -2.9336 -4.9230 17 6 7.8811 -3.2774 -4.1909 18 1 8.1650 -2.6824 -3.3355 19 6 8.6259 -4.3947 -4.5363 20 7 8.2797 -5.1197 -5.5780 21 14 10.1201 -4.8713 -3.5215 22 1 9.7032 -5.1369 -2.1212 23 1 10.7382 -6.0938 -4.0948 24 1 11.1069 -3.7619 -3.5424 25 6 5.1349 -1.3008 -5.3811 26 6 4.5016 -0.1221 -5.0512 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8508 0.7643 0.7258 33 1 3.7148 2.4783 0.2653 34 1 2.7766 3.4787 -0.9791 35 1 3.2439 4.8141 -4.8806 36 1 4.3857 2.7380 -5.5374 37 1 6.2722 0.6720 -2.2672 38 1 7.4029 -1.4262 -2.8684 39 1 8.8006 -5.9016 -5.8194 40 1 4.8181 -1.8587 -6.2499 41 1 3.6896 0.2445 -5.6617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904883244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:17 Heat of formation + Delta-G solvation = -73.887698 kcal Electronic energy + Delta-G solvation = -25386.780525 eV Core-core repulsion = 21618.135177 eV Total energy + Delta-G solvation = -3768.645347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79275 -40.68416 -39.73601 -38.25693 -37.77599 -34.51734 -33.72246 -32.23261 -31.92649 -31.31284 -29.73728 -27.43595 -27.20071 -24.72491 -24.18520 -23.69634 -23.15357 -22.25035 -19.88322 -19.46469 -18.92976 -18.21594 -18.04800 -17.55684 -16.54298 -16.37061 -16.23481 -16.12108 -15.70142 -15.55367 -15.29853 -15.18329 -15.03339 -14.78048 -14.44947 -14.11296 -13.76590 -13.59029 -13.41402 -13.19183 -13.01400 -12.78729 -12.62620 -12.54237 -12.50590 -12.36129 -12.15380 -12.04151 -11.28294 -11.07148 -10.89820 -10.52230 -10.41982 -9.85908 -9.53339 -8.81076 -8.49253 -6.17049 -0.05194 0.21677 0.56568 0.82397 1.35064 1.45663 1.51199 2.16557 2.17122 2.57744 2.74395 2.90525 3.13508 3.43952 3.54077 3.59270 3.87383 3.93267 4.07717 4.10040 4.11497 4.12594 4.22900 4.31554 4.43045 4.46506 4.54310 4.63672 4.67158 4.79326 4.81168 4.98826 5.00460 5.08423 5.14622 5.20383 5.27201 5.49885 5.58480 5.66249 5.69921 5.84860 5.99586 6.10219 6.30525 6.95089 6.99385 7.73486 8.73233 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003330 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.072337 B = 8405.488814 C = 9363.582344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.404 6.404 4 C 0.200 3.800 5 O -0.331 6.331 6 C 0.076 3.924 7 C 0.028 3.972 8 N -0.477 5.477 9 C 0.063 3.937 10 C -0.130 4.130 11 C -0.025 4.025 12 C -0.132 4.132 13 C -0.035 4.035 14 C -0.241 4.241 15 C 0.124 3.876 16 O -0.225 6.225 17 C -0.416 4.416 18 H 0.103 0.897 19 C -0.019 4.019 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.201 4.201 26 C -0.047 4.047 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.274 0.726 40 H 0.120 0.880 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 15.268 10.673 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.324 6.324 4 C 0.087 3.913 5 O -0.245 6.245 6 C 0.028 3.972 7 C -0.130 4.130 8 N -0.187 5.187 9 C -0.093 4.093 10 C -0.150 4.150 11 C -0.034 4.034 12 C -0.132 4.132 13 C -0.053 4.053 14 C -0.260 4.260 15 C 0.073 3.927 16 O -0.131 6.131 17 C -0.492 4.492 18 H 0.120 0.880 19 C -0.217 4.217 20 N -0.555 5.555 21 Si 0.836 3.164 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.221 4.221 26 C -0.065 4.065 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.189 0.811 35 H 0.204 0.796 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.049 15.640 10.620 21.896 hybrid contribution 1.225 -1.596 0.064 2.013 sum -9.824 14.043 10.684 20.196 Atomic orbital electron populations 1.21748 0.92626 1.03268 1.02827 1.22665 0.96538 0.82653 1.00719 1.88015 1.22242 1.28612 1.93554 1.24634 0.80107 1.04675 0.81838 1.86351 1.75022 1.42318 1.20851 1.20135 0.97594 0.89970 0.89456 1.23018 1.00233 0.89168 1.00534 1.67539 1.17448 1.31428 1.02330 1.23022 0.95811 0.97258 0.93235 1.22404 0.99026 0.92837 1.00719 1.18700 0.98930 0.94602 0.91144 1.18256 1.00072 0.96253 0.98670 1.20886 0.93526 0.93542 0.97388 1.21141 1.05660 0.98945 1.00286 1.19985 0.92849 0.86126 0.93711 1.83926 1.40552 1.33326 1.55334 1.21807 1.03834 1.12548 1.11043 0.87993 1.26582 1.02051 0.95021 0.98095 1.70172 1.40990 1.17148 1.27215 0.84668 0.75623 0.78375 0.77706 1.18091 1.19580 1.18155 1.20354 0.99611 0.99737 1.02353 1.20963 0.97884 0.92334 0.95293 0.89677 0.91040 0.92975 0.94503 0.91250 0.85522 0.85939 0.81079 0.79576 0.82344 0.85356 0.85967 0.91714 0.86169 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 0.96 6.54 71.98 0.47 1.43 16 3 O -0.40 -8.24 9.85 -126.21 -1.24 -9.48 16 4 C 0.20 3.55 6.39 113.37 0.72 4.28 16 5 O -0.33 -8.58 8.71 -69.29 -0.60 -9.18 16 6 C 0.08 2.02 6.57 22.83 0.15 2.17 16 7 C 0.03 0.68 9.97 84.76 0.84 1.52 16 8 N -0.48 -11.82 10.34 -195.72 -2.02 -13.85 16 9 C 0.06 1.34 11.16 84.61 0.94 2.28 16 10 C -0.13 -3.00 9.65 22.57 0.22 -2.78 16 11 C -0.03 -0.72 5.50 -19.76 -0.11 -0.83 16 12 C -0.13 -4.43 5.34 -20.02 -0.11 -4.54 16 13 C -0.04 -1.28 8.84 22.47 0.20 -1.08 16 14 C -0.24 -10.56 9.15 22.36 0.20 -10.36 16 15 C 0.12 6.15 6.65 22.64 0.15 6.30 16 16 O -0.23 -13.41 9.75 -21.92 -0.21 -13.63 16 17 C -0.42 -23.95 9.48 67.92 0.64 -23.31 16 18 H 0.10 5.37 5.19 -2.91 -0.02 5.35 16 19 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 20 N -0.92 -55.61 13.67 21.61 0.30 -55.32 16 21 Si 1.02 42.08 29.55 68.60 2.03 44.10 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 25 C -0.20 -8.49 9.98 22.35 0.22 -8.27 16 26 C -0.05 -1.60 9.54 22.47 0.21 -1.38 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.86 8.03 -2.38 -0.02 0.84 16 31 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 32 H 0.13 1.69 8.01 -2.39 -0.02 1.67 16 33 H 0.12 1.60 6.72 -2.39 -0.02 1.58 16 34 H 0.17 3.48 5.88 -2.91 -0.02 3.47 16 35 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.13 4.13 7.72 -2.92 -0.02 4.11 16 38 H 0.12 5.40 5.62 -2.91 -0.02 5.38 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 40 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -72.68 354.01 5.27 -67.41 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.05 Total: 26.73 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 5.98 Total: -36.79 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.73 Total: -69.17 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -2.06 Total: -32.29 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -72.68 5.27 -67.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904883244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.474 kcal (2) G-P(sol) polarization free energy of solvation -72.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds