Wall clock time and date at job start Tue Mar 31 2020 10:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08996 * 108.70067 * 303.20046 * 6 4 3 8 8 C 1.54558 * 108.75265 * 61.45716 * 6 4 3 9 9 S 1.84213 * 101.32529 * 144.06557 * 8 6 4 10 10 C 1.84069 * 93.91014 * 327.73836 * 9 8 6 11 11 N 1.45500 * 108.75505 * 185.09547 * 6 4 3 12 12 C 1.34784 * 122.43051 * 60.12760 * 11 6 4 13 13 O 1.21283 * 119.99359 * 0.02562 * 12 11 6 14 14 C 1.50696 * 120.00088 * 180.02562 * 12 11 6 15 15 C 1.53003 * 109.47091 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47244 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47244 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00007 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99726 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99860 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99723 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47476 * 59.99800 * 22 20 18 24 24 H 1.48504 * 109.47206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47208 * 299.99509 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 31 31 H 1.09003 * 111.05173 * 262.07634 * 8 6 4 32 32 H 1.08996 * 111.05404 * 26.01700 * 8 6 4 33 33 H 1.09002 * 110.77572 * 151.72145 * 10 9 8 34 34 H 1.09000 * 110.78358 * 274.95952 * 10 9 8 35 35 H 1.08999 * 109.46684 * 299.99539 * 14 12 11 36 36 H 1.08990 * 109.47813 * 60.00100 * 14 12 11 37 37 H 1.09000 * 109.46789 * 299.99782 * 15 14 12 38 38 H 1.09006 * 109.47223 * 59.99485 * 15 14 12 39 39 H 1.09000 * 109.47277 * 299.99762 * 16 15 14 40 40 H 1.08998 * 109.46904 * 59.99791 * 16 15 14 41 41 H 1.09000 * 109.46789 * 300.00060 * 17 16 15 42 42 H 1.09001 * 109.47312 * 59.99291 * 17 16 15 43 43 H 0.97000 * 119.99349 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5321 3.4767 -0.8627 8 6 3.4639 3.6635 1.2869 9 16 4.9543 4.6714 1.6821 10 6 6.1298 3.4301 0.9999 11 7 5.3676 2.8453 -0.1207 12 6 5.9685 2.2682 -1.1802 13 8 5.2986 1.8020 -2.0774 14 6 7.4724 2.2022 -1.2500 15 6 7.8927 1.5036 -2.5447 16 6 9.4196 1.4371 -2.6158 17 6 9.8399 0.7391 -3.9109 18 6 11.3438 0.6731 -3.9806 19 1 11.9402 1.0879 -3.1814 20 6 11.9584 0.0841 -5.0653 21 7 11.2321 -0.4205 -6.0386 22 14 13.8226 0.0029 -5.1520 23 1 14.3396 -0.7610 -3.9882 24 1 14.2306 -0.6747 -6.4089 25 1 14.3797 1.3792 -5.1278 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.6011 4.3004 1.0914 32 1 3.2496 2.9513 2.0836 33 1 7.0373 3.9143 0.6392 34 1 6.3683 2.6723 1.7462 35 1 7.8815 3.2123 -1.2333 36 1 7.8516 1.6424 -0.3951 37 1 7.4835 0.4935 -2.5618 38 1 7.5135 2.0638 -3.3995 39 1 9.8284 2.4474 -2.5989 40 1 9.7990 0.8772 -1.7611 41 1 9.4310 -0.2711 -3.9283 42 1 9.4603 1.2994 -4.7653 43 1 11.6646 -0.8352 -6.8015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907900238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:33 Heat of formation + Delta-G solvation = -127.918789 kcal Electronic energy + Delta-G solvation = -24041.074787 eV Core-core repulsion = 20405.530428 eV Total energy + Delta-G solvation = -3635.544360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25341 -39.73532 -37.12956 -36.35363 -34.92686 -32.90396 -32.40013 -31.55931 -29.57471 -27.84259 -25.96407 -25.04607 -23.46873 -22.45632 -21.20658 -20.02648 -19.51606 -18.38869 -17.82037 -17.27111 -16.70646 -16.56402 -16.14926 -15.80930 -15.47167 -14.75557 -14.57033 -14.43212 -14.11938 -13.84912 -13.63014 -13.50780 -13.13946 -12.88419 -12.65284 -12.52234 -12.28599 -12.11868 -11.94789 -11.68930 -11.61237 -11.44672 -10.96827 -10.85327 -10.59498 -10.53680 -10.52507 -10.41175 -9.97246 -9.60732 -9.28275 -9.22345 -8.99059 -8.41290 -8.29023 -5.93903 -3.96484 1.03367 1.36874 1.86682 1.92564 2.49604 2.70190 3.36315 3.40606 3.42850 3.59137 4.12604 4.31113 4.49501 4.55785 4.57278 4.58473 4.63866 4.77401 4.82178 4.92727 4.95443 5.22471 5.28548 5.32212 5.40863 5.41362 5.57881 5.65413 5.78121 6.11092 6.12039 6.27370 6.53185 6.81686 6.83375 7.02361 7.20944 7.42939 7.75017 7.91114 7.96952 8.07473 8.48941 9.10999 9.66994 11.17447 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002558 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.206194 B =10942.576762 C =12276.615426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.453 3.547 5 O -0.479 6.479 6 C 0.146 3.854 7 H 0.125 0.875 8 C -0.062 4.062 9 S -0.251 6.251 10 C 0.155 3.845 11 N -0.612 5.612 12 C 0.536 3.464 13 O -0.511 6.511 14 C -0.132 4.132 15 C -0.104 4.104 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.847 8.648 19.052 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.291 3.709 5 O -0.363 6.363 6 C 0.038 3.962 7 H 0.143 0.857 8 C -0.210 4.210 9 S -0.025 6.025 10 C -0.079 4.079 11 N -0.351 5.351 12 C 0.325 3.675 13 O -0.384 6.384 14 C -0.172 4.172 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.806 9.062 18.874 30.230 hybrid contribution 0.891 -1.379 -0.526 1.724 sum -20.914 7.683 18.348 28.863 Atomic orbital electron populations 1.21807 0.92383 1.03130 1.03512 1.23069 0.95380 0.79796 1.02908 1.86447 1.23872 1.32907 1.84248 1.23763 0.81137 0.92547 0.73413 1.90720 1.60275 1.42282 1.43043 1.20726 0.82974 0.91020 1.01497 0.85746 1.24422 0.99310 1.00392 0.96905 1.88506 1.03253 1.29424 1.81271 1.24331 0.96787 0.96070 0.90706 1.48492 1.03149 1.61490 1.21996 1.21088 0.91631 0.75298 0.79455 1.90726 1.66408 1.44174 1.37109 1.21833 0.88912 1.03600 1.02861 1.21482 0.97966 1.00588 0.94116 1.21644 0.91654 1.00362 1.01045 1.19089 0.95772 0.95571 0.91258 1.21241 0.92103 1.37584 1.04969 0.92789 1.25044 0.98126 0.95596 0.95812 1.69968 1.35185 1.39091 1.09244 0.86666 0.85939 0.78178 0.77239 1.20287 1.21329 1.20273 0.91503 0.90100 0.91328 0.91235 0.90895 0.84550 0.87575 0.85542 0.88055 0.88772 0.88723 0.91653 0.91693 0.93393 0.93404 0.96595 0.96584 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -3.65 10.16 -39.24 -0.40 -4.05 16 4 C 0.45 5.51 6.39 36.01 0.23 5.74 16 5 O -0.48 -7.60 14.64 -24.72 -0.36 -7.96 16 6 C 0.15 1.42 2.95 -68.80 -0.20 1.22 16 7 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.06 -0.39 6.99 37.98 0.27 -0.12 16 9 S -0.25 -1.92 23.43 -107.50 -2.52 -4.44 16 10 C 0.15 1.22 7.21 60.45 0.44 1.66 16 11 N -0.61 -6.80 2.73 -169.16 -0.46 -7.26 16 12 C 0.54 7.84 6.78 -10.98 -0.07 7.77 16 13 O -0.51 -9.55 14.82 -11.57 -0.17 -9.72 16 14 C -0.13 -1.79 4.49 -27.88 -0.13 -1.92 16 15 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 22 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.59 7.85 -51.93 -0.41 0.19 16 33 H 0.13 0.82 7.13 -51.93 -0.37 0.45 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.04 7.63 -51.93 -0.40 0.65 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -36.41 371.09 -9.32 -45.74 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -7.05 Total: -4.65 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 0.33 Total: -3.26 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.27 Total: -34.28 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.93 Total: -21.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.52 Total: -4.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.41 -9.32 -45.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907900238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.181 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds